Wall clock time and date at job start Mon Mar 30 2020 06:44:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50696 * 109.46790 * 2 1 4 4 C 1.38908 * 119.76346 * 270.01710 * 3 2 1 5 5 C 1.37571 * 120.23097 * 179.44775 * 4 3 2 6 6 C 1.39929 * 120.34975 * 0.83215 * 5 4 3 7 7 S 1.75837 * 129.77724 * 179.10681 * 6 5 4 8 8 C 1.75196 * 92.73875 * 180.02562 * 7 6 5 9 9 C 1.39151 * 124.65049 * 180.02562 * 8 7 6 10 10 H 1.07995 * 120.00134 * 173.14934 * 9 8 7 11 11 C 1.40641 * 119.99909 * 353.15100 * 9 8 7 12 12 N 1.30478 * 119.99641 * 6.59484 * 11 9 8 13 13 Si 1.86795 * 119.99876 * 186.60163 * 11 9 8 14 14 H 1.48500 * 109.47452 * 94.98390 * 13 11 9 15 15 H 1.48498 * 109.47197 * 214.98735 * 13 11 9 16 16 H 1.48505 * 109.47119 * 334.98400 * 13 11 9 17 17 C 1.38881 * 110.70192 * 359.97438 * 8 7 6 18 18 C 1.43192 * 123.26759 * 180.02562 * 17 8 7 19 19 N 6.02216 * 101.71581 * 54.13302 * 2 1 3 20 20 C 1.39858 * 119.49117 * 359.40820 * 6 5 4 21 21 C 1.36060 * 119.76018 * 90.00303 * 3 2 1 22 22 H 1.08999 * 109.47030 * 299.99558 * 1 2 3 23 23 H 1.08996 * 109.47408 * 59.99646 * 1 2 3 24 24 H 1.09004 * 109.47009 * 180.02562 * 1 2 3 25 25 H 1.08993 * 109.47084 * 240.00028 * 2 1 3 26 26 H 1.09005 * 109.47175 * 120.00242 * 2 1 3 27 27 H 1.08002 * 119.88014 * 0.02562 * 4 3 2 28 28 H 1.08003 * 119.81850 * 179.97438 * 5 4 3 29 29 H 0.97010 * 119.99657 * 180.02562 * 12 11 9 30 30 H 1.07997 * 119.74803 * 0.04348 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2618 2.0711 -1.2058 5 6 2.7094 3.3719 -1.2171 6 6 2.9542 4.0458 -0.0154 7 16 3.5420 5.6802 0.2582 8 6 3.4819 5.5002 1.9999 9 6 3.8393 6.4900 2.9104 10 1 3.6695 6.3393 3.9662 11 6 4.4217 7.6867 2.4556 12 7 4.5094 7.9242 1.1756 13 14 5.0698 8.9358 3.6840 14 1 6.5248 8.7201 3.8885 15 1 4.8411 10.3073 3.1627 16 1 4.3587 8.7729 4.9775 17 6 3.0276 4.2347 2.3473 18 6 2.8743 3.7999 3.7030 19 7 2.7529 3.4549 4.7786 20 6 2.7283 3.3909 1.1996 21 6 2.2574 2.0575 1.1812 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 1.8933 -0.5138 -0.8899 26 1 1.8934 -0.5139 0.8900 27 1 2.0792 1.5567 -2.1378 28 1 2.8861 3.8709 -2.1585 29 1 4.9114 8.7495 0.8619 30 1 2.0755 1.5406 2.1118 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396214955.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:00 Heat of formation + Delta-G solvation = 20.397576 kcal Electronic energy + Delta-G solvation = -15554.977625 eV Core-core repulsion = 13018.468714 eV Total energy + Delta-G solvation = -2536.508911 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.057 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.60826 -35.98596 -34.67358 -34.04118 -32.18504 -29.61221 -28.70301 -26.02341 -23.73587 -22.11365 -21.68484 -19.69091 -18.38037 -16.43969 -16.09851 -15.32952 -14.64174 -14.34938 -13.93154 -13.31733 -13.15512 -12.92530 -12.79272 -12.52833 -12.09227 -12.03954 -11.84900 -11.71881 -11.49749 -11.17189 -10.99413 -10.81796 -10.67400 -10.42079 -10.16109 -10.10377 -9.40932 -9.33298 -8.47552 -7.69151 -7.51421 -6.53397 -5.09007 1.94210 2.18334 2.56687 2.71577 2.79880 2.96468 3.01579 3.36992 3.53853 4.15477 4.20608 4.42782 5.10557 5.24611 5.30717 5.65132 5.69090 5.75449 5.89265 5.95364 6.09536 6.15791 6.29624 6.35425 6.44265 6.49671 6.72736 6.94974 7.02301 7.24353 7.33774 7.44550 7.56904 7.79100 7.92618 8.05815 9.04812 9.27893 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.031113 B = 0.006348 C = 0.005366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.740620 B = 4409.992209 C = 5217.252941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.079 4.079 3 C -0.074 4.074 4 C -0.171 4.171 5 C -0.058 4.058 6 C -0.243 4.243 7 S 0.159 5.841 8 C 0.082 3.918 9 C -0.353 4.353 10 H 0.105 0.895 11 C 0.056 3.944 12 N -0.748 5.748 13 Si 0.941 3.059 14 H -0.259 1.259 15 H -0.266 1.266 16 H -0.252 1.252 17 C -0.302 4.302 18 C 0.323 3.677 19 N -0.535 5.535 20 C 0.043 3.957 21 C -0.136 4.136 22 H 0.055 0.945 23 H 0.054 0.946 24 H 0.049 0.951 25 H 0.064 0.936 26 H 0.063 0.937 27 H 0.108 0.892 28 H 0.108 0.892 29 H 0.309 0.691 30 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.831 -1.503 -5.881 6.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.117 4.117 3 C -0.076 4.076 4 C -0.192 4.192 5 C -0.081 4.081 6 C -0.357 4.357 7 S 0.420 5.580 8 C -0.041 4.041 9 C -0.387 4.387 10 H 0.123 0.877 11 C -0.171 4.171 12 N -0.372 5.372 13 Si 0.762 3.238 14 H -0.183 1.183 15 H -0.190 1.190 16 H -0.175 1.175 17 C -0.314 4.314 18 C 0.015 3.985 19 N -0.217 5.217 20 C 0.035 3.965 21 C -0.156 4.156 22 H 0.074 0.926 23 H 0.073 0.927 24 H 0.068 0.932 25 H 0.083 0.917 26 H 0.082 0.918 27 H 0.126 0.874 28 H 0.126 0.874 29 H 0.123 0.877 30 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -0.543 -0.725 -5.346 5.422 hybrid contribution -0.066 -0.486 0.896 1.022 sum -0.609 -1.211 -4.449 4.651 Atomic orbital electron populations 1.21733 0.95402 1.00789 1.02232 1.20461 0.95708 0.93652 1.01846 1.19077 1.00039 0.95308 0.93181 1.20438 1.07192 0.95112 0.96421 1.20265 0.98731 0.93902 0.95180 1.23536 1.12172 1.04162 0.95843 1.84803 1.69431 1.04042 0.99749 1.21282 0.92813 0.93592 0.96366 1.19543 1.26388 0.96539 0.96216 0.87729 1.26524 0.93958 0.99772 0.96815 1.68530 1.28200 1.25339 1.15151 0.85674 0.80203 0.77684 0.80194 1.18303 1.19043 1.17525 1.15348 1.35512 0.96025 0.84530 1.25074 0.90365 0.91253 0.91818 1.81016 1.17588 1.11031 1.12020 1.18553 0.94684 0.92499 0.90813 1.20335 1.04522 0.94007 0.96776 0.92635 0.92673 0.93152 0.91729 0.91797 0.87439 0.87388 0.87698 0.87930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 9.89 37.16 0.37 -1.49 16 2 C -0.08 -1.13 6.04 -27.88 -0.17 -1.30 16 3 C -0.07 -1.33 5.08 -105.16 -0.53 -1.86 16 4 C -0.17 -3.00 9.68 -39.58 -0.38 -3.39 16 5 C -0.06 -1.11 10.07 -39.19 -0.39 -1.50 16 6 C -0.24 -5.31 6.43 -38.34 -0.25 -5.56 16 7 S 0.16 3.51 20.04 -107.50 -2.15 1.36 16 8 C 0.08 1.99 6.12 -39.00 -0.24 1.75 16 9 C -0.35 -8.22 8.90 -38.34 -0.34 -8.56 16 10 H 0.10 2.45 7.40 -52.49 -0.39 2.06 16 11 C 0.06 1.15 5.50 -17.22 -0.09 1.06 16 12 N -0.75 -15.49 10.58 55.59 0.59 -14.90 16 13 Si 0.94 15.71 29.57 -169.99 -5.03 10.68 16 14 H -0.26 -4.29 7.11 56.52 0.40 -3.89 16 15 H -0.27 -4.22 7.11 56.52 0.40 -3.82 16 16 H -0.25 -4.32 7.11 56.52 0.40 -3.92 16 17 C -0.30 -7.42 5.95 -104.82 -0.62 -8.05 16 18 C 0.32 8.10 14.56 -22.48 -0.33 7.78 16 19 N -0.54 -13.59 18.54 41.84 0.78 -12.81 16 20 C 0.04 0.99 6.01 -105.16 -0.63 0.36 16 21 C -0.14 -2.85 9.40 -39.15 -0.37 -3.22 16 22 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 23 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 24 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.06 0.82 8.08 -51.93 -0.42 0.40 16 26 H 0.06 0.89 8.07 -51.93 -0.42 0.47 16 27 H 0.11 1.58 8.06 -52.49 -0.42 1.15 16 28 H 0.11 1.79 8.06 -52.48 -0.42 1.37 16 29 H 0.31 5.59 8.29 -40.82 -0.34 5.25 16 30 H 0.10 2.12 8.03 -52.49 -0.42 1.70 16 LS Contribution 284.11 15.07 4.28 4.28 Total: -1.00 -25.46 284.11 -8.42 -33.88 By element: Atomic # 1 Polarization: 4.40 SS G_CDS: -2.90 Total: 1.50 kcal Atomic # 6 Polarization: -20.00 SS G_CDS: -3.99 Total: -23.99 kcal Atomic # 7 Polarization: -29.08 SS G_CDS: 1.36 Total: -27.72 kcal Atomic # 14 Polarization: 15.71 SS G_CDS: -5.03 Total: 10.68 kcal Atomic # 16 Polarization: 3.51 SS G_CDS: -2.15 Total: 1.36 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -25.46 -8.42 -33.88 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396214955.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.277 kcal (2) G-P(sol) polarization free energy of solvation -25.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.879 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds