Wall clock time and date at job start Mon Mar 30 2020 06:44:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50696 * 109.46790 * 2 1 4 4 C 1.38908 * 119.76346 * 270.01710 * 3 2 1 5 5 C 1.37571 * 120.23097 * 179.44775 * 4 3 2 6 6 C 1.39929 * 120.34975 * 0.83215 * 5 4 3 7 7 S 1.75837 * 129.77724 * 179.10681 * 6 5 4 8 8 C 1.75196 * 92.73875 * 180.02562 * 7 6 5 9 9 C 1.39151 * 124.65049 * 180.02562 * 8 7 6 10 10 H 1.07995 * 120.00134 * 173.14934 * 9 8 7 11 11 C 1.40641 * 119.99909 * 353.15100 * 9 8 7 12 12 N 1.30478 * 119.99641 * 6.59484 * 11 9 8 13 13 Si 1.86795 * 119.99876 * 186.60163 * 11 9 8 14 14 H 1.48500 * 109.47452 * 94.98390 * 13 11 9 15 15 H 1.48498 * 109.47197 * 214.98735 * 13 11 9 16 16 H 1.48505 * 109.47119 * 334.98400 * 13 11 9 17 17 C 1.38881 * 110.70192 * 359.97438 * 8 7 6 18 18 C 1.43192 * 123.26759 * 180.02562 * 17 8 7 19 19 N 6.02216 * 101.71581 * 54.13302 * 2 1 3 20 20 C 1.39858 * 119.49117 * 359.40820 * 6 5 4 21 21 C 1.36060 * 119.76018 * 90.00303 * 3 2 1 22 22 H 1.08999 * 109.47030 * 299.99558 * 1 2 3 23 23 H 1.08996 * 109.47408 * 59.99646 * 1 2 3 24 24 H 1.09004 * 109.47009 * 180.02562 * 1 2 3 25 25 H 1.08993 * 109.47084 * 240.00028 * 2 1 3 26 26 H 1.09005 * 109.47175 * 120.00242 * 2 1 3 27 27 H 1.08002 * 119.88014 * 0.02562 * 4 3 2 28 28 H 1.08003 * 119.81850 * 179.97438 * 5 4 3 29 29 H 0.97010 * 119.99657 * 180.02562 * 12 11 9 30 30 H 1.07997 * 119.74803 * 0.04348 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2618 2.0711 -1.2058 5 6 2.7094 3.3719 -1.2171 6 6 2.9542 4.0458 -0.0154 7 16 3.5420 5.6802 0.2582 8 6 3.4819 5.5002 1.9999 9 6 3.8393 6.4900 2.9104 10 1 3.6695 6.3393 3.9662 11 6 4.4217 7.6867 2.4556 12 7 4.5094 7.9242 1.1756 13 14 5.0698 8.9358 3.6840 14 1 6.5248 8.7201 3.8885 15 1 4.8411 10.3073 3.1627 16 1 4.3587 8.7729 4.9775 17 6 3.0276 4.2347 2.3473 18 6 2.8743 3.7999 3.7030 19 7 2.7529 3.4549 4.7786 20 6 2.7283 3.3909 1.1996 21 6 2.2574 2.0575 1.1812 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 1.8933 -0.5138 -0.8899 26 1 1.8934 -0.5139 0.8900 27 1 2.0792 1.5567 -2.1378 28 1 2.8861 3.8709 -2.1585 29 1 4.9114 8.7495 0.8619 30 1 2.0755 1.5406 2.1118 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396214955.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:00 Heat of formation + Delta-G solvation = 9.917197 kcal Electronic energy + Delta-G solvation = -15555.432089 eV Core-core repulsion = 13018.468714 eV Total energy + Delta-G solvation = -2536.963374 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.057 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.15336 -37.72677 -36.47099 -35.54899 -33.67800 -31.20910 -30.13864 -27.69755 -25.14216 -23.66414 -23.25051 -21.18659 -20.06061 -18.11020 -17.74297 -16.81650 -16.05092 -15.93749 -15.31160 -14.83848 -14.71645 -14.45590 -14.21189 -14.05584 -13.76462 -13.58152 -13.50414 -13.36205 -12.95775 -12.79624 -12.42517 -12.12075 -11.99629 -11.90297 -11.66867 -11.58778 -11.02741 -10.97429 -10.07506 -9.33380 -9.11429 -8.21525 -6.85859 0.33042 0.62759 0.99191 1.26743 1.31984 1.50214 1.54257 1.71873 2.06920 2.22757 2.44940 2.81110 3.31446 3.93698 3.97227 4.08374 4.37155 4.48364 4.59476 4.68136 4.71051 4.75970 4.91134 5.07389 5.12066 5.21118 5.35239 5.39951 5.43873 5.65745 5.69983 5.82318 5.96570 6.09371 6.30021 6.39101 7.10482 7.72439 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.031113 B = 0.006348 C = 0.005366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.740620 B = 4409.992209 C = 5217.252941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.079 4.079 3 C -0.066 4.066 4 C -0.159 4.159 5 C -0.063 4.063 6 C -0.261 4.261 7 S 0.167 5.833 8 C 0.055 3.945 9 C -0.373 4.373 10 H 0.091 0.909 11 C 0.028 3.972 12 N -0.757 5.757 13 Si 1.006 2.994 14 H -0.253 1.253 15 H -0.244 1.244 16 H -0.263 1.263 17 C -0.336 4.336 18 C 0.322 3.678 19 N -0.559 5.559 20 C 0.016 3.984 21 C -0.159 4.159 22 H 0.036 0.964 23 H 0.060 0.940 24 H 0.076 0.924 25 H 0.092 0.908 26 H 0.063 0.937 27 H 0.149 0.851 28 H 0.136 0.864 29 H 0.325 0.675 30 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.738 -1.611 -7.991 8.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.116 4.116 3 C -0.068 4.068 4 C -0.179 4.179 5 C -0.085 4.085 6 C -0.375 4.375 7 S 0.427 5.573 8 C -0.067 4.067 9 C -0.407 4.407 10 H 0.109 0.891 11 C -0.197 4.197 12 N -0.381 5.381 13 Si 0.823 3.177 14 H -0.177 1.177 15 H -0.168 1.168 16 H -0.187 1.187 17 C -0.349 4.349 18 C 0.016 3.984 19 N -0.242 5.242 20 C 0.007 3.993 21 C -0.179 4.179 22 H 0.055 0.945 23 H 0.079 0.921 24 H 0.095 0.905 25 H 0.110 0.890 26 H 0.082 0.918 27 H 0.167 0.833 28 H 0.153 0.847 29 H 0.140 0.860 30 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.461 -0.854 -7.486 7.549 hybrid contribution -0.118 -0.508 1.413 1.506 sum -0.580 -1.361 -6.073 6.251 Atomic orbital electron populations 1.21712 0.94194 1.02362 1.01600 1.20559 0.96624 0.91176 1.03247 1.19553 0.97922 0.97024 0.92309 1.20935 1.04726 0.94479 0.97757 1.20680 0.98036 0.94616 0.95157 1.23764 1.13038 1.04093 0.96591 1.84417 1.69939 1.04783 0.98140 1.21587 0.93341 0.93808 0.97961 1.19741 1.27311 0.97918 0.95693 0.89067 1.27277 0.93485 1.00379 0.98599 1.68496 1.27172 1.26342 1.16097 0.84769 0.79433 0.76135 0.77323 1.17718 1.16759 1.18729 1.15669 1.37475 0.97064 0.84656 1.25385 0.90049 0.90868 0.92098 1.80962 1.19069 1.11765 1.12372 1.18757 0.96066 0.93565 0.90863 1.20443 1.06015 0.93615 0.97811 0.94488 0.92109 0.90534 0.88950 0.91825 0.83298 0.84657 0.86008 0.88992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.25 9.89 71.98 0.71 -2.54 16 2 C -0.08 -2.02 6.04 29.85 0.18 -1.84 16 3 C -0.07 -2.25 5.08 -20.21 -0.10 -2.35 16 4 C -0.16 -5.03 9.68 22.27 0.22 -4.82 16 5 C -0.06 -2.24 10.07 22.52 0.23 -2.01 16 6 C -0.26 -11.40 6.43 23.07 0.15 -11.25 16 7 S 0.17 7.46 20.04 -56.49 -1.13 6.32 16 8 C 0.06 2.79 6.12 22.64 0.14 2.93 16 9 C -0.37 -17.96 8.90 23.08 0.21 -17.76 16 10 H 0.09 4.51 7.40 -2.91 -0.02 4.49 16 11 C 0.03 1.14 5.50 85.48 0.47 1.61 16 12 N -0.76 -30.82 10.58 21.95 0.23 -30.59 16 13 Si 1.01 31.38 29.57 68.60 2.03 33.40 16 14 H -0.25 -7.66 7.11 99.48 0.71 -6.96 16 15 H -0.24 -6.77 7.11 99.48 0.71 -6.06 16 16 H -0.26 -8.65 7.11 99.48 0.71 -7.94 16 17 C -0.34 -17.35 5.95 -19.99 -0.12 -17.47 16 18 C 0.32 17.07 14.56 88.33 1.29 18.36 16 19 N -0.56 -29.77 18.54 19.00 0.35 -29.41 16 20 C 0.02 0.74 6.01 -20.21 -0.12 0.62 16 21 C -0.16 -6.72 9.40 22.55 0.21 -6.51 16 22 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 23 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 24 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 25 H 0.09 1.90 8.08 -2.39 -0.02 1.88 16 26 H 0.06 1.65 8.07 -2.38 -0.02 1.63 16 27 H 0.15 3.52 8.06 -2.91 -0.02 3.50 16 28 H 0.14 4.04 8.06 -2.91 -0.02 4.01 16 29 H 0.33 11.22 8.29 -92.70 -0.77 10.46 16 30 H 0.09 3.97 8.03 -2.91 -0.02 3.94 16 Total: -1.00 -56.86 284.11 6.10 -50.76 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: 1.16 Total: 12.56 kcal Atomic # 6 Polarization: -46.49 SS G_CDS: 3.45 Total: -43.04 kcal Atomic # 7 Polarization: -60.59 SS G_CDS: 0.58 Total: -60.00 kcal Atomic # 14 Polarization: 31.38 SS G_CDS: 2.03 Total: 33.40 kcal Atomic # 16 Polarization: 7.46 SS G_CDS: -1.13 Total: 6.32 kcal Total: -56.86 6.10 -50.76 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396214955.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.681 kcal (2) G-P(sol) polarization free energy of solvation -56.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.764 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds