Wall clock time and date at job start Mon Mar 30 2020 06:42:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50704 * 109.46738 * 2 1 4 4 C 1.41452 * 119.62503 * 90.00403 * 3 2 1 5 5 C 1.40728 * 127.97346 * 359.95072 * 4 3 2 6 6 C 1.32397 * 115.89955 * 180.02562 * 5 4 3 7 7 S 1.75423 * 110.91023 * 0.02562 * 6 5 4 8 8 C 1.40509 * 119.73400 * 179.97438 * 4 3 2 9 9 C 1.38945 * 120.93350 * 359.97438 * 8 4 3 10 10 C 1.40262 * 120.44574 * 0.03838 * 9 8 4 11 11 C 1.40476 * 120.56313 * 180.02562 * 10 9 8 12 12 H 1.08000 * 119.99665 * 204.80393 * 11 10 9 13 13 C 1.40133 * 120.00249 * 24.80598 * 11 10 9 14 14 N 1.30746 * 119.99852 * 17.58753 * 13 11 10 15 15 Si 1.86805 * 120.00067 * 197.59005 * 13 11 10 16 16 H 1.48505 * 109.46973 * 59.99692 * 15 13 11 17 17 H 1.48496 * 109.47240 * 179.97438 * 15 13 11 18 18 H 1.48495 * 109.47132 * 300.00038 * 15 13 11 19 19 C 1.38035 * 119.62899 * 269.97529 * 3 2 1 20 20 C 1.43197 * 120.36147 * 0.02562 * 19 3 2 21 21 N 3.54125 * 94.90596 * 283.99052 * 2 1 3 22 22 H 1.09001 * 109.47235 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47155 * 299.99740 * 1 2 3 24 24 H 1.08997 * 109.47201 * 60.00165 * 1 2 3 25 25 H 1.08998 * 109.47155 * 240.00260 * 2 1 3 26 26 H 1.08997 * 109.47201 * 119.99835 * 2 1 3 27 27 H 1.07999 * 122.04780 * 0.04167 * 5 4 3 28 28 H 1.07998 * 124.54313 * 180.26041 * 6 5 4 29 29 H 1.07999 * 119.77660 * 180.02562 * 9 8 4 30 30 H 0.96999 * 119.99290 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.2654 2.0801 1.2296 5 6 2.0858 1.5748 2.5307 6 6 2.3791 2.4052 3.5192 7 16 2.9258 3.9514 2.8966 8 6 2.7341 3.4047 1.2323 9 6 2.9739 4.0799 0.0418 10 6 2.7504 3.4488 -1.1907 11 6 2.9925 4.1289 -2.3958 12 1 2.4723 3.8352 -3.2955 13 6 3.9089 5.1885 -2.4305 14 7 4.7808 5.3305 -1.4666 15 14 3.8849 6.3979 -3.8540 16 1 2.5604 7.0670 -3.9127 17 1 4.9457 7.4178 -3.6550 18 1 4.1288 5.6708 -5.1255 19 6 2.2602 2.0641 -1.1999 20 6 2.0215 1.3889 -2.4399 21 7 1.8328 0.8530 -3.4236 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.7308 0.5710 2.7117 28 1 2.2967 2.1619 4.5682 29 1 3.3345 5.0976 0.0657 30 1 5.4148 6.0642 -1.4905 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396214991.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:19 Heat of formation + Delta-G solvation = 43.084947 kcal Electronic energy + Delta-G solvation = -15998.644479 eV Core-core repulsion = 13463.119366 eV Total energy + Delta-G solvation = -2535.525113 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.057 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -38.73668 -35.80931 -35.07719 -33.71923 -32.54884 -29.25373 -28.64924 -25.74759 -23.45704 -22.72816 -20.95629 -20.08074 -17.38918 -16.85345 -16.44312 -15.44570 -15.21266 -14.07735 -13.57642 -13.34283 -13.16169 -13.00380 -12.72541 -12.26916 -12.24519 -12.01812 -11.70606 -11.53686 -11.51152 -11.39740 -11.19480 -10.90449 -10.64343 -10.41770 -10.01397 -9.92423 -9.64344 -9.31294 -8.53030 -7.54839 -7.24808 -6.84644 -4.75814 1.77977 1.95621 2.57117 2.80254 2.86627 2.89709 2.97223 3.35558 3.61492 3.72247 4.00554 4.32451 5.08753 5.18602 5.35922 5.45052 5.73660 5.78300 5.96677 6.02277 6.18334 6.20038 6.46017 6.55361 6.57206 6.70638 6.75413 6.87207 7.03297 7.34351 7.47190 7.55692 7.65480 8.03240 8.27631 8.37655 8.60889 9.63587 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.017488 B = 0.009116 C = 0.006193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.708371 B = 3070.681190 C = 4520.006577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.091 4.091 3 C 0.050 3.950 4 C -0.213 4.213 5 C -0.068 4.068 6 C -0.261 4.261 7 S 0.000 6.000 8 C -0.050 4.050 9 C -0.159 4.159 10 C 0.160 3.840 11 C -0.414 4.414 12 H 0.090 0.910 13 C 0.073 3.927 14 N -0.751 5.751 15 Si 0.918 3.082 16 H -0.256 1.256 17 H -0.271 1.271 18 H -0.259 1.259 19 C -0.149 4.149 20 C 0.300 3.700 21 N -0.492 5.492 22 H 0.051 0.949 23 H 0.058 0.942 24 H 0.054 0.946 25 H 0.065 0.935 26 H 0.071 0.929 27 H 0.121 0.879 28 H 0.145 0.855 29 H 0.130 0.870 30 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.369 -1.054 5.212 5.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.129 4.129 3 C 0.044 3.956 4 C -0.218 4.218 5 C -0.097 4.097 6 C -0.394 4.394 7 S 0.259 5.741 8 C -0.166 4.166 9 C -0.186 4.186 10 C 0.151 3.849 11 C -0.442 4.442 12 H 0.108 0.892 13 C -0.152 4.152 14 N -0.373 5.373 15 Si 0.740 3.260 16 H -0.180 1.180 17 H -0.196 1.196 18 H -0.184 1.184 19 C -0.155 4.155 20 C -0.011 4.011 21 N -0.170 5.170 22 H 0.070 0.930 23 H 0.077 0.923 24 H 0.073 0.927 25 H 0.083 0.917 26 H 0.090 0.910 27 H 0.139 0.861 28 H 0.163 0.837 29 H 0.148 0.852 30 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -1.996 -0.489 4.561 5.002 hybrid contribution -0.164 -0.482 -0.697 0.863 sum -2.160 -0.971 3.864 4.532 Atomic orbital electron populations 1.21683 0.94825 1.00971 1.02368 1.20612 0.96210 0.93859 1.02222 1.19266 0.92653 0.93226 0.90405 1.17320 1.17337 0.95098 0.92059 1.19746 0.99460 0.99141 0.91369 1.24473 1.15360 0.97932 1.01604 1.83800 1.74388 1.16642 0.99262 1.22387 1.01945 0.96496 0.95756 1.20472 1.09537 1.00368 0.88226 1.18103 0.86748 0.87124 0.92896 1.19708 1.17747 1.10546 0.96191 0.89220 1.26149 0.93398 0.97620 0.98006 1.69757 1.10432 1.26699 1.30364 0.86160 0.79730 0.79349 0.80746 1.18038 1.19592 1.18359 1.16681 1.19096 0.94500 0.85203 1.25582 0.91473 0.91579 0.92470 1.81046 1.13609 1.11240 1.11153 0.92989 0.92271 0.92711 0.91685 0.91020 0.86140 0.83704 0.85240 0.89448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.11 9.89 37.16 0.37 -1.74 16 2 C -0.09 -1.53 5.41 -27.88 -0.15 -1.68 16 3 C 0.05 1.01 5.22 -103.47 -0.54 0.47 16 4 C -0.21 -4.39 5.83 -106.88 -0.62 -5.01 16 5 C -0.07 -1.20 9.52 -40.56 -0.39 -1.59 16 6 C -0.26 -4.48 11.08 28.81 0.32 -4.16 16 7 S 0.00 -0.01 23.29 -107.50 -2.50 -2.51 16 8 C -0.05 -1.11 6.44 -38.46 -0.25 -1.36 16 9 C -0.16 -3.74 8.71 -38.56 -0.34 -4.08 16 10 C 0.16 3.82 5.72 -104.79 -0.60 3.22 16 11 C -0.41 -9.82 8.55 -38.03 -0.33 -10.15 16 12 H 0.09 2.11 7.38 -52.49 -0.39 1.73 16 13 C 0.07 1.61 5.14 -17.30 -0.09 1.52 16 14 N -0.75 -17.01 10.97 55.56 0.61 -16.40 16 15 Si 0.92 16.71 29.60 -169.99 -5.03 11.68 16 16 H -0.26 -4.64 7.11 56.52 0.40 -4.24 16 17 H -0.27 -4.75 7.11 56.52 0.40 -4.35 16 18 H -0.26 -4.79 7.11 56.52 0.40 -4.39 16 19 C -0.15 -3.34 5.91 -104.55 -0.62 -3.96 16 20 C 0.30 6.70 12.66 -22.47 -0.28 6.41 16 21 N -0.49 -11.20 18.54 41.84 0.78 -10.42 16 22 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 23 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 24 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 25 H 0.06 1.12 7.03 -51.93 -0.37 0.75 16 26 H 0.07 1.07 7.04 -51.93 -0.37 0.70 16 27 H 0.12 1.82 7.26 -52.49 -0.38 1.44 16 28 H 0.15 2.05 8.06 -52.49 -0.42 1.63 16 29 H 0.13 3.12 6.16 -52.49 -0.32 2.79 16 30 H 0.29 5.97 8.29 -40.82 -0.34 5.63 16 LS Contribution 279.45 15.07 4.21 4.21 Total: -1.00 -24.62 279.45 -8.10 -32.72 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: -2.65 Total: 2.82 kcal Atomic # 6 Polarization: -18.58 SS G_CDS: -3.51 Total: -22.10 kcal Atomic # 7 Polarization: -28.20 SS G_CDS: 1.38 Total: -26.82 kcal Atomic # 14 Polarization: 16.71 SS G_CDS: -5.03 Total: 11.68 kcal Atomic # 16 Polarization: -0.01 SS G_CDS: -2.50 Total: -2.51 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -24.62 -8.10 -32.72 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396214991.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.804 kcal (2) G-P(sol) polarization free energy of solvation -24.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.719 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds