Wall clock time and date at job start Mon Mar 30 2020 06:42:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50704 * 109.46738 * 2 1 4 4 C 1.41452 * 119.62503 * 90.00403 * 3 2 1 5 5 C 1.40728 * 127.97346 * 359.95072 * 4 3 2 6 6 C 1.32397 * 115.89955 * 180.02562 * 5 4 3 7 7 S 1.75423 * 110.91023 * 0.02562 * 6 5 4 8 8 C 1.40509 * 119.73400 * 179.97438 * 4 3 2 9 9 C 1.38945 * 120.93350 * 359.97438 * 8 4 3 10 10 C 1.40262 * 120.44574 * 0.03838 * 9 8 4 11 11 C 1.40476 * 120.56313 * 180.02562 * 10 9 8 12 12 H 1.08000 * 119.99665 * 204.80393 * 11 10 9 13 13 C 1.40133 * 120.00249 * 24.80598 * 11 10 9 14 14 N 1.30746 * 119.99852 * 17.58753 * 13 11 10 15 15 Si 1.86805 * 120.00067 * 197.59005 * 13 11 10 16 16 H 1.48505 * 109.46973 * 59.99692 * 15 13 11 17 17 H 1.48496 * 109.47240 * 179.97438 * 15 13 11 18 18 H 1.48495 * 109.47132 * 300.00038 * 15 13 11 19 19 C 1.38035 * 119.62899 * 269.97529 * 3 2 1 20 20 C 1.43197 * 120.36147 * 0.02562 * 19 3 2 21 21 N 3.54125 * 94.90596 * 283.99052 * 2 1 3 22 22 H 1.09001 * 109.47235 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47155 * 299.99740 * 1 2 3 24 24 H 1.08997 * 109.47201 * 60.00165 * 1 2 3 25 25 H 1.08998 * 109.47155 * 240.00260 * 2 1 3 26 26 H 1.08997 * 109.47201 * 119.99835 * 2 1 3 27 27 H 1.07999 * 122.04780 * 0.04167 * 5 4 3 28 28 H 1.07998 * 124.54313 * 180.26041 * 6 5 4 29 29 H 1.07999 * 119.77660 * 180.02562 * 9 8 4 30 30 H 0.96999 * 119.99290 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.2654 2.0801 1.2296 5 6 2.0858 1.5748 2.5307 6 6 2.3791 2.4052 3.5192 7 16 2.9258 3.9514 2.8966 8 6 2.7341 3.4047 1.2323 9 6 2.9739 4.0799 0.0418 10 6 2.7504 3.4488 -1.1907 11 6 2.9925 4.1289 -2.3958 12 1 2.4723 3.8352 -3.2955 13 6 3.9089 5.1885 -2.4305 14 7 4.7808 5.3305 -1.4666 15 14 3.8849 6.3979 -3.8540 16 1 2.5604 7.0670 -3.9127 17 1 4.9457 7.4178 -3.6550 18 1 4.1288 5.6708 -5.1255 19 6 2.2602 2.0641 -1.1999 20 6 2.0215 1.3889 -2.4399 21 7 1.8328 0.8530 -3.4236 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.7308 0.5710 2.7117 28 1 2.2967 2.1619 4.5682 29 1 3.3345 5.0976 0.0657 30 1 5.4148 6.0642 -1.4905 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396214991.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:18 Heat of formation + Delta-G solvation = 33.034703 kcal Electronic energy + Delta-G solvation = -15999.080290 eV Core-core repulsion = 13463.119366 eV Total energy + Delta-G solvation = -2535.960924 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.057 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.34297 -37.50247 -36.73626 -35.21667 -34.11833 -30.88413 -30.17368 -27.38197 -24.96568 -24.27913 -22.44845 -21.66992 -19.05793 -18.50863 -18.00350 -16.98382 -16.76804 -15.57087 -15.08692 -14.84121 -14.71444 -14.54466 -14.25838 -13.90536 -13.83456 -13.60798 -13.21325 -13.13772 -13.07307 -12.90257 -12.61891 -12.40573 -11.97158 -11.94109 -11.61129 -11.44234 -11.21449 -10.93232 -10.12546 -9.20433 -8.88557 -8.42947 -6.49768 0.20364 0.28424 1.00096 1.30694 1.35988 1.46609 1.47181 1.80312 1.94050 2.10438 2.30271 2.63558 3.39493 3.48605 3.90992 4.15752 4.38089 4.50335 4.56483 4.71775 4.78732 4.90865 4.94180 5.03317 5.15340 5.20028 5.27851 5.38885 5.44713 5.68283 5.82845 5.94674 6.00266 6.29047 6.56318 6.66123 6.84091 8.02898 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.017488 B = 0.009116 C = 0.006193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.708371 B = 3070.681190 C = 4520.006577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.089 4.089 3 C 0.052 3.948 4 C -0.214 4.214 5 C -0.079 4.079 6 C -0.239 4.239 7 S 0.007 5.993 8 C -0.074 4.074 9 C -0.183 4.183 10 C 0.139 3.861 11 C -0.451 4.451 12 H 0.078 0.922 13 C 0.042 3.958 14 N -0.781 5.781 15 Si 0.980 3.020 16 H -0.255 1.255 17 H -0.256 1.256 18 H -0.264 1.264 19 C -0.172 4.172 20 C 0.307 3.693 21 N -0.507 5.507 22 H 0.080 0.920 23 H 0.066 0.934 24 H 0.033 0.967 25 H 0.056 0.944 26 H 0.099 0.901 27 H 0.158 0.842 28 H 0.186 0.814 29 H 0.114 0.886 30 H 0.302 0.698 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.940 -2.117 7.215 8.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.126 4.126 3 C 0.047 3.953 4 C -0.220 4.220 5 C -0.108 4.108 6 C -0.371 4.371 7 S 0.267 5.733 8 C -0.190 4.190 9 C -0.209 4.209 10 C 0.131 3.869 11 C -0.479 4.479 12 H 0.096 0.904 13 C -0.180 4.180 14 N -0.403 5.403 15 Si 0.799 3.201 16 H -0.179 1.179 17 H -0.180 1.180 18 H -0.188 1.188 19 C -0.178 4.178 20 C -0.003 4.003 21 N -0.185 5.185 22 H 0.099 0.901 23 H 0.085 0.915 24 H 0.053 0.947 25 H 0.075 0.925 26 H 0.117 0.883 27 H 0.176 0.824 28 H 0.203 0.797 29 H 0.132 0.868 30 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -2.566 -1.555 6.577 7.229 hybrid contribution -0.012 -0.233 -1.071 1.096 sum -2.578 -1.788 5.506 6.337 Atomic orbital electron populations 1.21655 0.93236 1.02684 1.01743 1.20691 0.97431 0.91370 1.03139 1.19663 0.91176 0.94894 0.89544 1.17774 1.16090 0.94536 0.93606 1.19984 1.00060 1.01042 0.89702 1.25004 1.12589 0.96039 1.03495 1.83819 1.74070 1.18234 0.97217 1.22759 1.01745 0.97549 0.96948 1.20337 1.11464 1.00064 0.89071 1.18367 0.87281 0.87989 0.93306 1.19793 1.19468 1.12648 0.95959 0.90382 1.26833 0.92479 0.98446 1.00228 1.69776 1.11049 1.27577 1.31887 0.85260 0.80024 0.77396 0.77412 1.17895 1.17952 1.18795 1.16870 1.20409 0.94403 0.86090 1.25635 0.91046 0.91213 0.92402 1.81019 1.14383 1.11893 1.11247 0.90106 0.91514 0.94732 0.92507 0.88287 0.82447 0.79696 0.86815 0.88658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.69 9.89 71.98 0.71 -2.98 16 2 C -0.09 -2.76 5.41 29.85 0.16 -2.60 16 3 C 0.05 2.08 5.22 -19.12 -0.10 1.98 16 4 C -0.21 -8.47 5.83 -21.33 -0.12 -8.60 16 5 C -0.08 -2.49 9.52 21.77 0.21 -2.28 16 6 C -0.24 -7.13 11.08 66.71 0.74 -6.39 16 7 S 0.01 0.25 23.29 -56.49 -1.32 -1.07 16 8 C -0.07 -3.26 6.44 22.99 0.15 -3.11 16 9 C -0.18 -8.93 8.71 22.93 0.20 -8.73 16 10 C 0.14 6.94 5.72 -19.98 -0.11 6.83 16 11 C -0.45 -22.55 8.55 23.28 0.20 -22.35 16 12 H 0.08 3.92 7.38 -2.91 -0.02 3.90 16 13 C 0.04 1.92 5.14 85.31 0.44 2.35 16 14 N -0.78 -36.74 10.97 21.86 0.24 -36.50 16 15 Si 0.98 35.14 29.60 68.60 2.03 37.17 16 16 H -0.25 -8.99 7.11 99.48 0.71 -8.28 16 17 H -0.26 -8.43 7.11 99.48 0.71 -7.72 16 18 H -0.26 -9.53 7.11 99.48 0.71 -8.82 16 19 C -0.17 -7.89 5.91 -19.82 -0.12 -8.01 16 20 C 0.31 14.08 12.66 88.33 1.12 15.20 16 21 N -0.51 -23.48 18.54 19.00 0.35 -23.13 16 22 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 23 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 24 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 25 H 0.06 1.87 7.03 -2.39 -0.02 1.85 16 26 H 0.10 2.53 7.04 -2.39 -0.02 2.52 16 27 H 0.16 3.82 7.26 -2.91 -0.02 3.80 16 28 H 0.19 4.08 8.06 -2.91 -0.02 4.06 16 29 H 0.11 5.78 6.16 -2.91 -0.02 5.77 16 30 H 0.30 12.64 8.29 -92.71 -0.77 11.87 16 Total: -1.00 -54.79 279.45 5.95 -48.84 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: 1.18 Total: 13.38 kcal Atomic # 6 Polarization: -42.16 SS G_CDS: 3.47 Total: -38.69 kcal Atomic # 7 Polarization: -60.22 SS G_CDS: 0.59 Total: -59.63 kcal Atomic # 14 Polarization: 35.14 SS G_CDS: 2.03 Total: 37.17 kcal Atomic # 16 Polarization: 0.25 SS G_CDS: -1.32 Total: -1.07 kcal Total: -54.79 5.95 -48.84 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396214991.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.871 kcal (2) G-P(sol) polarization free energy of solvation -54.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.837 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds