Wall clock time and date at job start Mon Mar 30 2020 06:43:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50692 * 109.47125 * 2 1 4 4 S 1.69984 * 124.02439 * 271.79608 * 3 2 1 5 5 C 1.75759 * 93.22583 * 179.97438 * 4 3 2 6 6 C 1.39291 * 110.21819 * 0.02562 * 5 4 3 7 7 C 1.40514 * 119.31790 * 179.97438 * 6 5 4 8 8 C 1.37705 * 120.66542 * 359.97438 * 7 6 5 9 9 C 1.38162 * 120.48225 * 0.03865 * 8 7 6 10 10 C 1.39234 * 120.01222 * 359.96070 * 9 8 7 11 11 C 1.43206 * 120.00137 * 180.02562 * 10 9 8 12 12 N 6.76431 * 105.68189 * 327.63995 * 2 1 3 13 13 C 1.36404 * 124.02256 * 91.49839 * 3 2 1 14 14 C 1.40782 * 123.29564 * 0.02562 * 13 3 2 15 15 H 1.08007 * 119.99715 * 318.70838 * 14 13 3 16 16 C 1.39750 * 120.00426 * 138.71262 * 14 13 3 17 17 N 1.31051 * 120.00231 * 155.52308 * 16 14 13 18 18 Si 1.86805 * 119.99582 * 335.51903 * 16 14 13 19 19 H 1.48497 * 109.46993 * 94.95040 * 18 16 14 20 20 H 1.48501 * 109.46930 * 214.95210 * 18 16 14 21 21 H 1.48501 * 109.47234 * 334.95075 * 18 16 14 22 22 H 1.08998 * 109.47259 * 178.66191 * 1 2 3 23 23 H 1.09001 * 109.47232 * 298.65970 * 1 2 3 24 24 H 1.08996 * 109.47064 * 58.65616 * 1 2 3 25 25 H 1.09001 * 109.46743 * 120.00365 * 2 1 3 26 26 H 1.08997 * 109.46856 * 239.99582 * 2 1 3 27 27 H 1.07998 * 119.66944 * 179.97438 * 7 6 5 28 28 H 1.08005 * 119.76140 * 180.02562 * 8 7 6 29 29 H 1.08007 * 119.99571 * 179.97438 * 9 8 7 30 30 H 0.97004 * 119.99432 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 16 2.3077 2.3322 -1.4081 5 6 2.8368 3.7464 -0.5086 6 6 2.7923 3.4909 0.8599 7 6 3.1783 4.4978 1.7608 8 6 3.5979 5.7268 1.3028 9 6 3.6455 5.9908 -0.0526 10 6 3.2685 5.0105 -0.9667 11 6 3.3184 5.2841 -2.3714 12 7 3.3584 5.5011 -3.4858 13 6 2.3146 2.1304 1.1302 14 6 2.1661 1.6071 2.4286 15 1 1.3047 1.0028 2.6721 16 6 3.1333 1.8696 3.4027 17 7 2.8135 1.8238 4.6727 18 14 4.8820 2.2857 2.8942 19 1 5.0442 3.7608 2.8407 20 1 5.8333 1.7185 3.8833 21 1 5.1585 1.7084 1.5542 22 1 -0.3634 -1.0274 -0.0240 23 1 -0.3634 0.4929 0.9018 24 1 -0.3633 0.5345 -0.8777 25 1 1.8933 -0.5139 0.8900 26 1 1.8933 -0.5139 -0.8899 27 1 3.1457 4.3059 2.8231 28 1 3.8916 6.4901 2.0082 29 1 3.9754 6.9576 -0.4031 30 1 3.4850 2.0056 5.3487 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396215656.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:10 Heat of formation + Delta-G solvation = 53.087446 kcal Electronic energy + Delta-G solvation = -16112.236883 eV Core-core repulsion = 13577.145512 eV Total energy + Delta-G solvation = -2535.091372 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.057 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.16191 -36.49017 -35.34678 -33.19226 -32.00415 -30.86843 -28.41655 -26.27907 -23.65281 -22.54690 -21.61482 -19.45242 -18.49393 -16.61773 -16.50335 -15.22009 -14.89332 -14.61816 -14.27914 -13.87462 -13.14847 -13.06195 -13.00204 -12.75440 -12.50232 -12.43446 -11.96360 -11.61973 -11.51220 -11.29461 -11.00513 -10.58918 -10.41525 -10.23304 -10.12492 -9.87923 -9.72193 -9.29019 -8.57355 -7.71088 -7.02929 -6.92726 -4.50046 1.05999 1.52617 2.37199 2.76398 2.93233 3.06984 3.07722 3.21727 3.32872 3.57299 3.89044 4.23115 4.25733 4.85626 5.21116 5.34508 5.63780 5.74702 5.91083 5.96230 6.00809 6.19753 6.31144 6.47967 6.53745 6.61946 6.75663 6.86411 6.91599 6.97785 7.12444 7.27482 7.74915 7.77593 8.22286 8.42710 8.70003 10.00906 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.017292 B = 0.011361 C = 0.007619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1618.831719 B = 2463.912151 C = 3674.347298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.013 4.013 3 C -0.361 4.361 4 S 0.084 5.916 5 C -0.100 4.100 6 C -0.075 4.075 7 C -0.036 4.036 8 C -0.153 4.153 9 C -0.056 4.056 10 C -0.030 4.030 11 C 0.267 3.733 12 N -0.438 5.438 13 C 0.087 3.913 14 C -0.441 4.441 15 H 0.096 0.904 16 C 0.093 3.907 17 N -0.804 5.804 18 Si 0.868 3.132 19 H -0.248 1.248 20 H -0.281 1.281 21 H -0.248 1.248 22 H 0.041 0.959 23 H 0.056 0.944 24 H 0.043 0.957 25 H 0.074 0.926 26 H 0.044 0.956 27 H 0.133 0.867 28 H 0.129 0.871 29 H 0.129 0.871 30 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.550 3.466 -2.636 4.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.053 4.053 3 C -0.477 4.477 4 S 0.350 5.650 5 C -0.218 4.218 6 C -0.085 4.085 7 C -0.056 4.056 8 C -0.175 4.175 9 C -0.079 4.079 10 C -0.040 4.040 11 C -0.047 4.047 12 N -0.114 5.114 13 C 0.077 3.923 14 C -0.473 4.473 15 H 0.114 0.886 16 C -0.126 4.126 17 N -0.429 5.429 18 Si 0.692 3.308 19 H -0.173 1.173 20 H -0.208 1.208 21 H -0.172 1.172 22 H 0.060 0.940 23 H 0.075 0.925 24 H 0.063 0.937 25 H 0.092 0.908 26 H 0.062 0.938 27 H 0.151 0.849 28 H 0.147 0.853 29 H 0.147 0.853 30 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 1.423 3.330 -5.597 6.666 hybrid contribution 0.887 0.360 2.022 2.238 sum 2.310 3.689 -3.574 5.632 Atomic orbital electron populations 1.21775 0.96898 0.99738 1.01630 1.19455 0.93994 0.91016 1.00807 1.22901 1.29661 1.01121 0.94020 1.82100 1.69360 1.03285 1.10235 1.22649 1.04228 0.97051 0.97904 1.19688 1.01724 0.96173 0.90884 1.21354 0.92553 0.91499 1.00230 1.20691 1.04509 0.97411 0.94843 1.20858 0.97235 0.97213 0.92570 1.15243 1.10342 0.93991 0.84431 1.25768 0.93029 0.93164 0.92736 1.81144 1.10203 1.08446 1.11643 1.17325 0.93186 0.87645 0.94109 1.18678 1.08165 1.29523 0.90943 0.88575 1.25941 1.00856 0.91722 0.94071 1.69858 1.36058 1.35620 1.01401 0.87081 0.82129 0.80682 0.80889 1.17299 1.20751 1.17151 0.94010 0.92503 0.93743 0.90775 0.93762 0.84935 0.85317 0.85323 0.90574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.48 9.89 37.16 0.37 -2.11 16 2 C -0.01 -0.26 6.04 -27.89 -0.17 -0.42 16 3 C -0.36 -7.80 5.56 -34.97 -0.19 -7.99 16 4 S 0.08 1.67 22.57 -107.50 -2.43 -0.76 16 5 C -0.10 -2.00 6.31 -38.06 -0.24 -2.25 16 6 C -0.07 -1.60 4.80 -105.23 -0.51 -2.11 16 7 C -0.04 -0.69 6.61 -38.92 -0.26 -0.94 16 8 C -0.15 -2.38 9.99 -39.80 -0.40 -2.77 16 9 C -0.06 -0.84 9.73 -39.24 -0.38 -1.22 16 10 C -0.03 -0.52 5.77 -106.47 -0.61 -1.14 16 11 C 0.27 4.71 15.05 -22.47 -0.34 4.37 16 12 N -0.44 -8.09 18.54 41.84 0.78 -7.32 16 13 C 0.09 2.00 4.69 -106.18 -0.50 1.50 16 14 C -0.44 -10.86 8.57 -38.06 -0.33 -11.19 16 15 H 0.10 2.52 8.06 -52.48 -0.42 2.10 16 16 C 0.09 2.22 4.52 -17.32 -0.08 2.14 16 17 N -0.80 -19.71 13.94 55.54 0.77 -18.94 16 18 Si 0.87 18.46 24.44 -169.99 -4.15 14.31 16 19 H -0.25 -4.82 5.54 56.52 0.31 -4.51 16 20 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 21 H -0.25 -5.63 7.11 56.52 0.40 -5.22 16 22 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 24 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.07 1.50 7.51 -51.93 -0.39 1.11 16 26 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.13 2.60 5.65 -52.49 -0.30 2.31 16 28 H 0.13 1.58 8.06 -52.48 -0.42 1.16 16 29 H 0.13 1.48 8.06 -52.48 -0.42 1.06 16 30 H 0.28 6.33 8.30 -40.82 -0.34 5.99 16 LS Contribution 274.97 15.07 4.14 4.14 Total: -1.00 -25.29 274.97 -7.39 -32.67 By element: Atomic # 1 Polarization: 2.88 SS G_CDS: -2.87 Total: 0.01 kcal Atomic # 6 Polarization: -20.50 SS G_CDS: -3.63 Total: -24.13 kcal Atomic # 7 Polarization: -27.80 SS G_CDS: 1.55 Total: -26.25 kcal Atomic # 14 Polarization: 18.46 SS G_CDS: -4.15 Total: 14.31 kcal Atomic # 16 Polarization: 1.67 SS G_CDS: -2.43 Total: -0.76 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -25.29 -7.39 -32.67 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396215656.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.761 kcal (2) G-P(sol) polarization free energy of solvation -25.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.674 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds