Wall clock time and date at job start Mon Mar 30 2020 06:43:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50692 * 109.47125 * 2 1 4 4 S 1.69984 * 124.02439 * 271.79608 * 3 2 1 5 5 C 1.75759 * 93.22583 * 179.97438 * 4 3 2 6 6 C 1.39291 * 110.21819 * 0.02562 * 5 4 3 7 7 C 1.40514 * 119.31790 * 179.97438 * 6 5 4 8 8 C 1.37705 * 120.66542 * 359.97438 * 7 6 5 9 9 C 1.38162 * 120.48225 * 0.03865 * 8 7 6 10 10 C 1.39234 * 120.01222 * 359.96070 * 9 8 7 11 11 C 1.43206 * 120.00137 * 180.02562 * 10 9 8 12 12 N 6.76431 * 105.68189 * 327.63995 * 2 1 3 13 13 C 1.36404 * 124.02256 * 91.49839 * 3 2 1 14 14 C 1.40782 * 123.29564 * 0.02562 * 13 3 2 15 15 H 1.08007 * 119.99715 * 318.70838 * 14 13 3 16 16 C 1.39750 * 120.00426 * 138.71262 * 14 13 3 17 17 N 1.31051 * 120.00231 * 155.52308 * 16 14 13 18 18 Si 1.86805 * 119.99582 * 335.51903 * 16 14 13 19 19 H 1.48497 * 109.46993 * 94.95040 * 18 16 14 20 20 H 1.48501 * 109.46930 * 214.95210 * 18 16 14 21 21 H 1.48501 * 109.47234 * 334.95075 * 18 16 14 22 22 H 1.08998 * 109.47259 * 178.66191 * 1 2 3 23 23 H 1.09001 * 109.47232 * 298.65970 * 1 2 3 24 24 H 1.08996 * 109.47064 * 58.65616 * 1 2 3 25 25 H 1.09001 * 109.46743 * 120.00365 * 2 1 3 26 26 H 1.08997 * 109.46856 * 239.99582 * 2 1 3 27 27 H 1.07998 * 119.66944 * 179.97438 * 7 6 5 28 28 H 1.08005 * 119.76140 * 180.02562 * 8 7 6 29 29 H 1.08007 * 119.99571 * 179.97438 * 9 8 7 30 30 H 0.97004 * 119.99432 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 16 2.3077 2.3322 -1.4081 5 6 2.8368 3.7464 -0.5086 6 6 2.7923 3.4909 0.8599 7 6 3.1783 4.4978 1.7608 8 6 3.5979 5.7268 1.3028 9 6 3.6455 5.9908 -0.0526 10 6 3.2685 5.0105 -0.9667 11 6 3.3184 5.2841 -2.3714 12 7 3.3584 5.5011 -3.4858 13 6 2.3146 2.1304 1.1302 14 6 2.1661 1.6071 2.4286 15 1 1.3047 1.0028 2.6721 16 6 3.1333 1.8696 3.4027 17 7 2.8135 1.8238 4.6727 18 14 4.8820 2.2857 2.8942 19 1 5.0442 3.7608 2.8407 20 1 5.8333 1.7185 3.8833 21 1 5.1585 1.7084 1.5542 22 1 -0.3634 -1.0274 -0.0240 23 1 -0.3634 0.4929 0.9018 24 1 -0.3633 0.5345 -0.8777 25 1 1.8933 -0.5139 0.8900 26 1 1.8933 -0.5139 -0.8899 27 1 3.1457 4.3059 2.8231 28 1 3.8916 6.4901 2.0082 29 1 3.9754 6.9576 -0.4031 30 1 3.4850 2.0056 5.3487 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396215656.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:09 Heat of formation + Delta-G solvation = 40.931494 kcal Electronic energy + Delta-G solvation = -16112.764005 eV Core-core repulsion = 13577.145512 eV Total energy + Delta-G solvation = -2535.618493 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.057 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.61438 -37.98293 -36.85966 -34.92805 -33.50608 -32.28159 -29.98134 -27.94296 -25.09925 -24.05481 -23.08715 -21.15214 -19.96017 -18.23956 -18.04982 -16.81751 -16.35992 -16.22376 -15.65239 -15.32345 -14.74256 -14.59535 -14.56726 -14.19028 -14.01587 -13.90121 -13.47212 -13.20851 -13.04177 -12.80935 -12.55115 -12.11604 -12.07687 -11.77065 -11.67411 -11.41379 -11.35521 -10.99863 -10.10518 -9.22864 -8.80163 -8.54662 -6.32140 -0.34681 0.07017 0.84642 1.15226 1.34953 1.45062 1.51795 1.56124 1.67625 2.03817 2.17884 2.76226 2.85712 3.12854 3.88088 4.07598 4.18549 4.39549 4.44237 4.49621 4.59954 4.67178 4.92911 5.01558 5.12826 5.20448 5.23645 5.32176 5.42505 5.46026 5.52782 5.86045 6.06617 6.31683 6.37907 6.66806 6.88971 8.28774 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.017292 B = 0.011361 C = 0.007619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1618.831719 B = 2463.912151 C = 3674.347298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.019 4.019 3 C -0.362 4.362 4 S 0.093 5.907 5 C -0.116 4.116 6 C -0.101 4.101 7 C -0.057 4.057 8 C -0.131 4.131 9 C -0.032 4.032 10 C -0.032 4.032 11 C 0.280 3.720 12 N -0.452 5.452 13 C 0.065 3.935 14 C -0.469 4.469 15 H 0.059 0.941 16 C 0.069 3.931 17 N -0.845 5.845 18 Si 0.912 3.088 19 H -0.213 1.213 20 H -0.278 1.278 21 H -0.273 1.273 22 H 0.068 0.932 23 H 0.034 0.966 24 H 0.051 0.949 25 H 0.056 0.944 26 H 0.062 0.938 27 H 0.123 0.877 28 H 0.174 0.826 29 H 0.177 0.823 30 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.843 6.027 -3.853 7.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.058 4.058 3 C -0.478 4.478 4 S 0.359 5.641 5 C -0.235 4.235 6 C -0.111 4.111 7 C -0.077 4.077 8 C -0.152 4.152 9 C -0.054 4.054 10 C -0.042 4.042 11 C -0.034 4.034 12 N -0.129 5.129 13 C 0.055 3.945 14 C -0.502 4.502 15 H 0.077 0.923 16 C -0.146 4.146 17 N -0.472 5.472 18 Si 0.734 3.266 19 H -0.136 1.136 20 H -0.204 1.204 21 H -0.198 1.198 22 H 0.087 0.913 23 H 0.053 0.947 24 H 0.070 0.930 25 H 0.075 0.925 26 H 0.080 0.920 27 H 0.141 0.859 28 H 0.192 0.808 29 H 0.195 0.805 30 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 2.711 5.915 -6.814 9.422 hybrid contribution 0.434 -0.384 2.253 2.326 sum 3.145 5.530 -4.561 7.828 Atomic orbital electron populations 1.21668 0.95301 1.01341 1.00789 1.19557 0.95407 0.90094 1.00776 1.23390 1.27338 1.02146 0.94949 1.81898 1.69779 1.03362 1.09035 1.22775 1.05336 0.97981 0.97385 1.19671 1.03550 0.95826 0.92014 1.21499 0.93895 0.92717 0.99581 1.21200 1.01532 0.96464 0.96012 1.21418 0.94138 0.98101 0.91717 1.15414 1.10331 0.93618 0.84862 1.25674 0.92531 0.92711 0.92528 1.81174 1.10716 1.09000 1.11978 1.17530 0.94190 0.89060 0.93726 1.18535 1.08100 1.30948 0.92575 0.92270 1.26396 1.03085 0.91417 0.93749 1.69883 1.37251 1.37890 1.02195 0.86439 0.78676 0.82500 0.78967 1.13614 1.20363 1.19790 0.91312 0.94675 0.93015 0.92532 0.91959 0.85926 0.80849 0.80544 0.89863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.68 9.89 71.98 0.71 -3.97 16 2 C -0.02 -0.75 6.04 29.85 0.18 -0.57 16 3 C -0.36 -15.94 5.56 25.25 0.14 -15.80 16 4 S 0.09 3.66 22.57 -56.49 -1.27 2.38 16 5 C -0.12 -4.50 6.31 23.25 0.15 -4.35 16 6 C -0.10 -4.26 4.80 -20.26 -0.10 -4.35 16 7 C -0.06 -2.04 6.61 22.70 0.15 -1.89 16 8 C -0.13 -3.40 9.99 22.13 0.22 -3.18 16 9 C -0.03 -0.77 9.73 22.49 0.22 -0.55 16 10 C -0.03 -1.01 5.77 -21.06 -0.12 -1.13 16 11 C 0.28 8.94 15.05 88.33 1.33 10.27 16 12 N -0.45 -15.44 18.54 19.01 0.35 -15.08 16 13 C 0.06 3.07 4.69 -20.87 -0.10 2.97 16 14 C -0.47 -24.41 8.57 23.26 0.20 -24.21 16 15 H 0.06 3.39 8.06 -2.91 -0.02 3.37 16 16 C 0.07 3.39 4.52 85.17 0.39 3.78 16 17 N -0.84 -43.03 13.94 21.80 0.30 -42.73 16 18 Si 0.91 38.10 24.44 68.60 1.68 39.77 16 19 H -0.21 -7.60 5.54 99.48 0.55 -7.05 16 20 H -0.28 -11.24 7.11 99.48 0.71 -10.54 16 21 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 22 H 0.07 2.01 8.14 -2.39 -0.02 2.00 16 23 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 24 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 25 H 0.06 2.41 7.51 -2.39 -0.02 2.39 16 26 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 27 H 0.12 4.66 5.65 -2.91 -0.02 4.64 16 28 H 0.17 3.03 8.06 -2.91 -0.02 3.00 16 29 H 0.18 2.72 8.06 -2.91 -0.02 2.69 16 30 H 0.29 13.34 8.30 -92.71 -0.77 12.57 16 Total: -1.00 -57.48 274.97 5.44 -52.05 By element: Atomic # 1 Polarization: 5.58 SS G_CDS: 1.01 Total: 6.59 kcal Atomic # 6 Polarization: -46.35 SS G_CDS: 3.37 Total: -42.99 kcal Atomic # 7 Polarization: -58.47 SS G_CDS: 0.66 Total: -57.81 kcal Atomic # 14 Polarization: 38.10 SS G_CDS: 1.68 Total: 39.77 kcal Atomic # 16 Polarization: 3.66 SS G_CDS: -1.27 Total: 2.38 kcal Total: -57.48 5.44 -52.05 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396215656.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.979 kcal (2) G-P(sol) polarization free energy of solvation -57.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.047 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds