Wall clock time and date at job start Mon Mar 30 2020 06:44:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50700 * 109.47440 * 2 1 4 4 C 1.38010 * 120.06232 * 265.00156 * 3 2 1 5 5 C 1.37596 * 120.86914 * 179.72384 * 4 3 2 6 6 C 1.41741 * 120.94653 * 0.02562 * 5 4 3 7 7 C 1.40530 * 128.67556 * 179.97438 * 6 5 4 8 8 C 1.33800 * 115.54104 * 180.02562 * 7 6 5 9 9 C 1.43204 * 124.69209 * 180.02562 * 8 7 6 10 10 N 8.87189 * 107.48453 * 14.57122 * 2 1 3 11 11 S 1.75483 * 110.61384 * 0.02562 * 8 7 6 12 12 C 1.39710 * 118.74452 * 359.97438 * 6 5 4 13 13 C 1.40346 * 120.06278 * 84.72109 * 3 2 1 14 14 C 1.40902 * 120.11500 * 0.26091 * 13 3 2 15 15 H 1.08005 * 119.99895 * 39.06434 * 14 13 3 16 16 C 1.39952 * 120.00174 * 219.07297 * 14 13 3 17 17 N 1.30852 * 119.99682 * 20.58830 * 16 14 13 18 18 Si 1.86802 * 120.00249 * 200.59441 * 16 14 13 19 19 H 1.48504 * 109.47251 * 59.99391 * 18 16 14 20 20 H 1.48498 * 109.47331 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.46911 * 299.99408 * 18 16 14 22 22 H 1.09005 * 109.46958 * 59.99913 * 1 2 3 23 23 H 1.08994 * 109.47273 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.46762 * 299.99899 * 1 2 3 25 25 H 1.09003 * 109.47173 * 239.99941 * 2 1 3 26 26 H 1.09005 * 109.46958 * 120.00087 * 2 1 3 27 27 H 1.08002 * 119.56414 * 359.74342 * 4 3 2 28 28 H 1.07996 * 119.52764 * 179.97438 * 5 4 3 29 29 H 1.07997 * 122.23091 * 0.05038 * 7 6 5 30 30 H 0.97006 * 119.99884 * 182.02907 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3610 2.0379 -1.1899 5 6 2.8159 3.3363 -1.2097 6 6 2.9605 4.0764 -0.0095 7 6 3.4063 5.3984 0.1587 8 6 3.4410 5.8393 1.4215 9 6 3.8610 7.1503 1.8159 10 7 4.1955 8.1898 2.1289 11 16 2.9004 4.5887 2.5275 12 6 2.6311 3.4631 1.2018 13 6 2.1614 2.1209 1.2095 14 6 1.8270 1.4959 2.4273 15 1 2.0759 0.4572 2.5874 16 6 1.1721 2.2210 3.4293 17 7 0.5180 3.3128 3.1254 18 14 1.2320 1.6304 5.2005 19 1 2.6439 1.5805 5.6582 20 1 0.4660 2.5674 6.0609 21 1 0.6342 0.2740 5.2904 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 2.2594 1.4946 -2.1178 28 1 3.0673 3.7979 -2.1532 29 1 3.7010 6.0175 -0.6757 30 1 0.0888 3.8314 3.8239 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396216265.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:48 Heat of formation + Delta-G solvation = 47.438199 kcal Electronic energy + Delta-G solvation = -16033.405483 eV Core-core repulsion = 13498.069141 eV Total energy + Delta-G solvation = -2535.336341 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.057 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.57473 -36.57833 -35.15495 -33.70078 -31.84660 -29.93478 -28.01566 -25.57410 -23.96003 -21.92269 -21.50218 -19.40058 -18.26352 -16.92240 -15.76481 -15.12734 -14.55145 -14.39424 -13.88611 -13.64870 -13.10180 -12.97755 -12.76413 -12.37520 -12.29592 -12.12872 -11.80036 -11.61120 -11.32468 -11.16702 -10.90385 -10.75803 -10.37195 -10.12308 -9.94344 -9.70814 -9.53881 -9.04379 -8.44123 -7.37034 -7.10891 -6.39264 -4.61699 1.18346 2.13677 2.57138 2.84103 3.00827 3.01903 3.11804 3.16426 3.43024 3.81772 3.83109 4.41828 4.44453 5.13054 5.78241 5.84308 5.90756 5.98125 6.26455 6.31526 6.38749 6.40058 6.51919 6.66293 6.73788 6.94731 7.05075 7.10426 7.18207 7.33957 7.53443 7.73725 7.83840 7.94644 8.23143 8.52044 8.64581 9.97363 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.016755 B = 0.010670 C = 0.006861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.709924 B = 2623.438829 C = 4080.208958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.054 4.054 3 C -0.166 4.166 4 C -0.082 4.082 5 C -0.185 4.185 6 C -0.072 4.072 7 C -0.049 4.049 8 C -0.183 4.183 9 C 0.300 3.700 10 N -0.445 5.445 11 S 0.186 5.814 12 C -0.145 4.145 13 C 0.154 3.846 14 C -0.469 4.469 15 H 0.089 0.911 16 C 0.072 3.928 17 N -0.774 5.774 18 Si 0.893 3.107 19 H -0.260 1.260 20 H -0.275 1.275 21 H -0.263 1.263 22 H 0.042 0.958 23 H 0.037 0.963 24 H 0.065 0.935 25 H 0.044 0.956 26 H 0.064 0.936 27 H 0.098 0.902 28 H 0.099 0.901 29 H 0.129 0.871 30 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.846 -3.142 -2.539 4.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.091 4.091 3 C -0.172 4.172 4 C -0.101 4.101 5 C -0.207 4.207 6 C -0.079 4.079 7 C -0.089 4.089 8 C -0.302 4.302 9 C -0.015 4.015 10 N -0.123 5.123 11 S 0.456 5.544 12 C -0.263 4.263 13 C 0.148 3.852 14 C -0.498 4.498 15 H 0.107 0.893 16 C -0.147 4.147 17 N -0.399 5.399 18 Si 0.716 3.284 19 H -0.184 1.184 20 H -0.200 1.200 21 H -0.187 1.187 22 H 0.061 0.939 23 H 0.056 0.944 24 H 0.084 0.916 25 H 0.063 0.937 26 H 0.082 0.918 27 H 0.116 0.884 28 H 0.117 0.883 29 H 0.147 0.853 30 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 1.021 -1.353 -0.270 1.717 hybrid contribution -0.144 -0.371 -0.888 0.973 sum 0.877 -1.724 -1.158 2.255 Atomic orbital electron populations 1.21649 0.96226 0.99529 1.02205 1.20089 0.95170 0.93548 1.00295 1.19673 1.08503 0.97054 0.91927 1.20307 0.98945 0.94348 0.96514 1.20267 1.10862 0.95124 0.94481 1.17818 1.03384 0.92426 0.94254 1.20025 0.98767 0.95245 0.94824 1.19998 1.16100 0.93913 1.00191 1.24702 0.92306 0.91558 0.92927 1.81169 1.11259 1.11338 1.08567 1.84078 1.62487 1.00954 1.06837 1.22947 1.09439 1.00212 0.93736 1.16659 0.88263 0.87521 0.92711 1.19324 1.33772 0.99078 0.97646 0.89336 1.25823 0.93466 0.94434 1.00985 1.69777 1.20861 1.13082 1.36199 0.86543 0.79976 0.79971 0.81864 1.18441 1.20012 1.18733 0.93882 0.94431 0.91584 0.93686 0.91775 0.88372 0.88312 0.85331 0.89972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 9.89 37.16 0.37 -2.03 16 2 C -0.05 -0.97 5.58 -27.88 -0.16 -1.12 16 3 C -0.17 -3.47 5.19 -103.91 -0.54 -4.01 16 4 C -0.08 -1.59 9.60 -39.90 -0.38 -1.97 16 5 C -0.19 -3.61 10.08 -38.48 -0.39 -4.00 16 6 C -0.07 -1.51 5.86 -107.14 -0.63 -2.14 16 7 C -0.05 -0.93 10.01 -40.28 -0.40 -1.33 16 8 C -0.18 -3.55 6.18 -39.21 -0.24 -3.79 16 9 C 0.30 5.67 15.76 -22.47 -0.35 5.32 16 10 N -0.44 -8.68 18.54 41.84 0.78 -7.91 16 11 S 0.19 3.95 19.88 -107.50 -2.14 1.81 16 12 C -0.15 -3.31 5.75 -37.51 -0.22 -3.53 16 13 C 0.15 3.57 5.37 -106.57 -0.57 3.00 16 14 C -0.47 -10.83 7.86 -37.93 -0.30 -11.12 16 15 H 0.09 1.98 6.75 -52.48 -0.35 1.62 16 16 C 0.07 1.62 4.28 -17.33 -0.07 1.55 16 17 N -0.77 -18.07 10.69 55.55 0.59 -17.48 16 18 Si 0.89 17.35 29.61 -169.99 -5.03 12.31 16 19 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 20 H -0.28 -5.30 7.11 56.52 0.40 -4.90 16 21 H -0.26 -5.04 7.11 56.52 0.40 -4.64 16 22 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 23 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.07 1.30 7.92 -51.93 -0.41 0.89 16 25 H 0.04 0.71 8.05 -51.93 -0.42 0.30 16 26 H 0.06 1.17 6.63 -51.93 -0.34 0.83 16 27 H 0.10 1.64 8.06 -52.49 -0.42 1.22 16 28 H 0.10 1.66 8.06 -52.49 -0.42 1.24 16 29 H 0.13 2.04 8.06 -52.49 -0.42 1.61 16 30 H 0.29 6.32 8.30 -40.82 -0.34 5.98 16 LS Contribution 279.55 15.07 4.21 4.21 Total: -1.00 -24.07 279.55 -8.25 -32.32 By element: Atomic # 1 Polarization: 2.69 SS G_CDS: -2.78 Total: -0.08 kcal Atomic # 6 Polarization: -21.31 SS G_CDS: -3.89 Total: -25.19 kcal Atomic # 7 Polarization: -26.75 SS G_CDS: 1.37 Total: -25.38 kcal Atomic # 14 Polarization: 17.35 SS G_CDS: -5.03 Total: 12.31 kcal Atomic # 16 Polarization: 3.95 SS G_CDS: -2.14 Total: 1.81 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -24.07 -8.25 -32.32 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396216265.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.762 kcal (2) G-P(sol) polarization free energy of solvation -24.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.324 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds