Wall clock time and date at job start Mon Mar 30 2020 06:44:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50700 * 109.47440 * 2 1 4 4 C 1.38010 * 120.06232 * 265.00156 * 3 2 1 5 5 C 1.37596 * 120.86914 * 179.72384 * 4 3 2 6 6 C 1.41741 * 120.94653 * 0.02562 * 5 4 3 7 7 C 1.40530 * 128.67556 * 179.97438 * 6 5 4 8 8 C 1.33800 * 115.54104 * 180.02562 * 7 6 5 9 9 C 1.43204 * 124.69209 * 180.02562 * 8 7 6 10 10 N 8.87189 * 107.48453 * 14.57122 * 2 1 3 11 11 S 1.75483 * 110.61384 * 0.02562 * 8 7 6 12 12 C 1.39710 * 118.74452 * 359.97438 * 6 5 4 13 13 C 1.40346 * 120.06278 * 84.72109 * 3 2 1 14 14 C 1.40902 * 120.11500 * 0.26091 * 13 3 2 15 15 H 1.08005 * 119.99895 * 39.06434 * 14 13 3 16 16 C 1.39952 * 120.00174 * 219.07297 * 14 13 3 17 17 N 1.30852 * 119.99682 * 20.58830 * 16 14 13 18 18 Si 1.86802 * 120.00249 * 200.59441 * 16 14 13 19 19 H 1.48504 * 109.47251 * 59.99391 * 18 16 14 20 20 H 1.48498 * 109.47331 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.46911 * 299.99408 * 18 16 14 22 22 H 1.09005 * 109.46958 * 59.99913 * 1 2 3 23 23 H 1.08994 * 109.47273 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.46762 * 299.99899 * 1 2 3 25 25 H 1.09003 * 109.47173 * 239.99941 * 2 1 3 26 26 H 1.09005 * 109.46958 * 120.00087 * 2 1 3 27 27 H 1.08002 * 119.56414 * 359.74342 * 4 3 2 28 28 H 1.07996 * 119.52764 * 179.97438 * 5 4 3 29 29 H 1.07997 * 122.23091 * 0.05038 * 7 6 5 30 30 H 0.97006 * 119.99884 * 182.02907 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3610 2.0379 -1.1899 5 6 2.8159 3.3363 -1.2097 6 6 2.9605 4.0764 -0.0095 7 6 3.4063 5.3984 0.1587 8 6 3.4410 5.8393 1.4215 9 6 3.8610 7.1503 1.8159 10 7 4.1955 8.1898 2.1289 11 16 2.9004 4.5887 2.5275 12 6 2.6311 3.4631 1.2018 13 6 2.1614 2.1209 1.2095 14 6 1.8270 1.4959 2.4273 15 1 2.0759 0.4572 2.5874 16 6 1.1721 2.2210 3.4293 17 7 0.5180 3.3128 3.1254 18 14 1.2320 1.6304 5.2005 19 1 2.6439 1.5805 5.6582 20 1 0.4660 2.5674 6.0609 21 1 0.6342 0.2740 5.2904 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 2.2594 1.4946 -2.1178 28 1 3.0673 3.7979 -2.1532 29 1 3.7010 6.0175 -0.6757 30 1 0.0888 3.8314 3.8239 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396216265.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:48 Heat of formation + Delta-G solvation = 38.562754 kcal Electronic energy + Delta-G solvation = -16033.790351 eV Core-core repulsion = 13498.069141 eV Total energy + Delta-G solvation = -2535.721210 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.057 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.14006 -38.12095 -36.70094 -35.31772 -33.32716 -31.55252 -29.54837 -27.21853 -25.47089 -23.52401 -22.97592 -20.96559 -19.84450 -18.53394 -17.36177 -16.71029 -16.09863 -15.95364 -15.38362 -15.18811 -14.60576 -14.53477 -14.28521 -13.89994 -13.83889 -13.63942 -13.36021 -13.16480 -12.87965 -12.64854 -12.49182 -12.28072 -11.90349 -11.58232 -11.51224 -11.24797 -11.09007 -10.66421 -10.05783 -8.95743 -8.76485 -8.01426 -6.31589 -0.36008 0.56866 0.96615 1.27784 1.41119 1.47405 1.55068 1.57068 1.91986 2.22522 2.29031 2.78600 2.89453 3.50473 4.32280 4.36429 4.47563 4.53976 4.80010 4.87760 4.88419 4.98443 5.05651 5.18256 5.24001 5.37171 5.48922 5.63251 5.68078 5.77416 5.94753 6.12561 6.31301 6.37415 6.56438 6.88806 6.97622 8.33307 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.016755 B = 0.010670 C = 0.006861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.709924 B = 2623.438829 C = 4080.208958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.054 4.054 3 C -0.170 4.170 4 C -0.092 4.092 5 C -0.173 4.173 6 C -0.093 4.093 7 C -0.036 4.036 8 C -0.182 4.182 9 C 0.312 3.688 10 N -0.453 5.453 11 S 0.154 5.846 12 C -0.171 4.171 13 C 0.120 3.880 14 C -0.491 4.491 15 H 0.084 0.916 16 C 0.045 3.955 17 N -0.803 5.803 18 Si 0.939 3.061 19 H -0.262 1.262 20 H -0.273 1.273 21 H -0.258 1.258 22 H 0.047 0.953 23 H 0.064 0.936 24 H 0.032 0.968 25 H 0.073 0.927 26 H 0.055 0.945 27 H 0.132 0.868 28 H 0.133 0.867 29 H 0.165 0.835 30 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.197 -3.406 -4.308 5.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.091 4.091 3 C -0.176 4.176 4 C -0.111 4.111 5 C -0.195 4.195 6 C -0.100 4.100 7 C -0.074 4.074 8 C -0.301 4.301 9 C -0.003 4.003 10 N -0.132 5.132 11 S 0.424 5.576 12 C -0.289 4.289 13 C 0.114 3.886 14 C -0.520 4.520 15 H 0.102 0.898 16 C -0.171 4.171 17 N -0.430 5.430 18 Si 0.762 3.238 19 H -0.187 1.187 20 H -0.198 1.198 21 H -0.182 1.182 22 H 0.066 0.934 23 H 0.083 0.917 24 H 0.051 0.949 25 H 0.091 0.909 26 H 0.073 0.927 27 H 0.150 0.850 28 H 0.151 0.849 29 H 0.182 0.818 30 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 1.376 -1.621 -2.048 2.953 hybrid contribution -0.215 -0.310 -0.520 0.642 sum 1.161 -1.931 -2.568 3.417 Atomic orbital electron populations 1.21557 0.95666 1.00843 1.00749 1.20146 0.95553 0.92203 1.01206 1.20159 1.07246 0.98213 0.91940 1.20708 0.98456 0.94702 0.97261 1.20760 1.08444 0.95047 0.95271 1.18216 1.03983 0.93467 0.94315 1.20298 0.96948 0.94632 0.95545 1.19892 1.16529 0.93610 1.00063 1.24503 0.91938 0.91207 0.92641 1.81184 1.11669 1.11585 1.08730 1.84066 1.63580 1.02111 1.07891 1.23191 1.10356 1.00602 0.94727 1.17028 0.89425 0.88437 0.93703 1.19404 1.34916 0.99067 0.98660 0.89829 1.26281 0.92980 0.94460 1.03370 1.69823 1.22152 1.14216 1.36824 0.85836 0.79639 0.79695 0.78671 1.18699 1.19763 1.18231 0.93377 0.91750 0.94882 0.90863 0.92669 0.85036 0.84922 0.81756 0.90024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.35 9.89 71.98 0.71 -3.64 16 2 C -0.05 -1.86 5.58 29.85 0.17 -1.69 16 3 C -0.17 -6.92 5.19 -19.41 -0.10 -7.02 16 4 C -0.09 -3.31 9.60 22.06 0.21 -3.10 16 5 C -0.17 -6.22 10.08 22.98 0.23 -5.99 16 6 C -0.09 -3.74 5.86 -21.50 -0.13 -3.87 16 7 C -0.04 -1.27 10.01 21.82 0.22 -1.05 16 8 C -0.18 -6.87 6.18 22.51 0.14 -6.74 16 9 C 0.31 11.39 15.76 88.33 1.39 12.79 16 10 N -0.45 -17.08 18.54 19.00 0.35 -16.73 16 11 S 0.15 6.62 19.88 -56.49 -1.12 5.49 16 12 C -0.17 -7.81 5.75 23.61 0.14 -7.67 16 13 C 0.12 5.59 5.37 -21.13 -0.11 5.48 16 14 C -0.49 -23.26 7.86 23.34 0.18 -23.07 16 15 H 0.08 3.87 6.75 -2.91 -0.02 3.85 16 16 C 0.05 2.09 4.28 85.25 0.36 2.45 16 17 N -0.80 -38.67 10.69 21.83 0.23 -38.44 16 18 Si 0.94 36.31 29.61 68.60 2.03 38.34 16 19 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 20 H -0.27 -10.31 7.11 99.48 0.71 -9.61 16 21 H -0.26 -9.65 7.11 99.48 0.71 -8.94 16 22 H 0.05 1.52 8.14 -2.38 -0.02 1.50 16 23 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 24 H 0.03 1.30 7.92 -2.39 -0.02 1.28 16 25 H 0.07 2.10 8.05 -2.39 -0.02 2.08 16 26 H 0.05 2.00 6.63 -2.38 -0.02 1.98 16 27 H 0.13 3.81 8.06 -2.91 -0.02 3.79 16 28 H 0.13 3.82 8.06 -2.91 -0.02 3.79 16 29 H 0.17 4.55 8.06 -2.91 -0.02 4.53 16 30 H 0.29 13.08 8.30 -92.70 -0.77 12.31 16 Total: -1.00 -51.65 279.55 6.08 -45.57 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: 1.17 Total: 8.89 kcal Atomic # 6 Polarization: -46.55 SS G_CDS: 3.42 Total: -43.14 kcal Atomic # 7 Polarization: -55.75 SS G_CDS: 0.59 Total: -55.16 kcal Atomic # 14 Polarization: 36.31 SS G_CDS: 2.03 Total: 38.34 kcal Atomic # 16 Polarization: 6.62 SS G_CDS: -1.12 Total: 5.49 kcal Total: -51.65 6.08 -45.57 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396216265.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.132 kcal (2) G-P(sol) polarization free energy of solvation -51.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.569 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds