Wall clock time and date at job start Mon Mar 30 2020 06:43:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50704 * 109.46567 * 2 1 4 4 C 1.37349 * 119.54485 * 265.01867 * 3 2 1 5 5 C 1.39884 * 122.46382 * 179.97438 * 4 3 2 6 6 S 1.76215 * 130.12834 * 180.02562 * 5 4 3 7 7 C 1.75483 * 91.54922 * 179.97438 * 6 5 4 8 8 C 1.32733 * 110.67724 * 359.77560 * 7 6 5 9 9 C 1.39794 * 120.67331 * 359.97438 * 5 4 3 10 10 C 1.47894 * 118.27413 * 0.02562 * 9 5 4 11 11 C 1.39899 * 120.71185 * 180.02562 * 10 9 5 12 12 H 1.08001 * 120.00161 * 140.76707 * 11 10 9 13 13 C 1.40359 * 119.99904 * 320.76376 * 11 10 9 14 14 N 1.30627 * 120.00287 * 339.71407 * 13 11 10 15 15 Si 1.86800 * 120.00078 * 159.71830 * 13 11 10 16 16 H 1.48506 * 109.47184 * 59.99820 * 15 13 11 17 17 H 1.48498 * 109.47458 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47260 * 300.00170 * 15 13 11 19 19 C 1.39515 * 119.53895 * 85.00668 * 3 2 1 20 20 C 1.43191 * 120.45197 * 359.97438 * 19 3 2 21 21 N 3.55602 * 90.33719 * 74.36592 * 2 1 3 22 22 H 1.09000 * 109.47299 * 60.00045 * 1 2 3 23 23 H 1.09008 * 109.47065 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47378 * 299.99465 * 1 2 3 25 25 H 1.08998 * 109.47378 * 240.00535 * 2 1 3 26 26 H 1.09000 * 109.47299 * 119.99955 * 2 1 3 27 27 H 1.08006 * 118.76883 * 0.02562 * 4 3 2 28 28 H 1.08000 * 124.66104 * 180.02562 * 7 6 5 29 29 H 1.07997 * 122.09987 * 180.26170 * 8 7 6 30 30 H 0.96998 * 120.00200 * 180.40371 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.3557 2.0249 -1.1904 5 6 2.8266 3.3402 -1.2614 6 16 3.2960 4.3045 -2.6596 7 6 3.6863 5.6788 -1.6405 8 6 3.4626 5.3939 -0.3636 9 6 2.9880 4.1035 -0.1014 10 6 2.6489 3.4837 1.1979 11 6 2.7905 4.2013 2.3904 12 1 2.0525 4.1001 3.1725 13 6 3.8918 5.0526 2.5706 14 7 4.9652 4.8950 1.8431 15 14 3.8225 6.4112 3.8508 16 1 3.6062 5.8153 5.1938 17 1 5.1023 7.1643 3.8432 18 1 2.7036 7.3344 3.5330 19 6 2.1618 2.1046 1.2092 20 6 1.8209 1.4656 2.4444 21 7 1.5509 0.9583 3.4244 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5137 0.8900 25 1 1.8934 -0.5137 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 2.2415 1.4635 -2.1060 28 1 4.0539 6.6274 -2.0029 29 1 3.6377 6.1120 0.4238 30 1 5.7284 5.4796 1.9717 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396216371.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:32 Heat of formation + Delta-G solvation = 48.840776 kcal Electronic energy + Delta-G solvation = -16127.070235 eV Core-core repulsion = 13591.794713 eV Total energy + Delta-G solvation = -2535.275521 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.057 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.42919 -35.90019 -34.76379 -33.97270 -31.83764 -30.10783 -27.92184 -25.69854 -23.61908 -22.32921 -21.03952 -19.88199 -17.66242 -16.74408 -16.07169 -15.64927 -14.90548 -14.18455 -13.68555 -13.31550 -13.01014 -12.81706 -12.58953 -12.34232 -12.13982 -11.91370 -11.69888 -11.66073 -11.44103 -11.34752 -11.07373 -10.79631 -10.58391 -10.45468 -10.15631 -9.74308 -9.66582 -9.30219 -8.30928 -7.39803 -7.33620 -6.74450 -4.86830 1.68909 2.18115 2.52680 2.84324 2.85601 2.90629 2.94974 3.30036 3.59665 3.91131 4.11544 4.34333 5.12886 5.30730 5.44972 5.52856 5.84918 5.88400 6.07037 6.11346 6.25214 6.28680 6.45725 6.57678 6.63049 6.66412 6.82118 6.96447 6.99751 7.45191 7.51708 7.54706 7.67282 7.92295 8.20782 8.34484 8.81954 9.60795 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.015164 B = 0.011070 C = 0.006708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1846.065783 B = 2528.711135 C = 4173.337473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.088 4.088 3 C 0.038 3.962 4 C -0.222 4.222 5 C -0.058 4.058 6 S 0.012 5.988 7 C -0.270 4.270 8 C -0.033 4.033 9 C -0.136 4.136 10 C 0.209 3.791 11 C -0.431 4.431 12 H 0.096 0.904 13 C 0.079 3.921 14 N -0.741 5.741 15 Si 0.908 3.092 16 H -0.258 1.258 17 H -0.271 1.271 18 H -0.255 1.255 19 C -0.198 4.198 20 C 0.307 3.693 21 N -0.509 5.509 22 H 0.057 0.943 23 H 0.050 0.950 24 H 0.054 0.946 25 H 0.068 0.932 26 H 0.064 0.936 27 H 0.101 0.899 28 H 0.146 0.854 29 H 0.128 0.872 30 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.247 1.397 -5.182 5.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.125 4.125 3 C 0.032 3.968 4 C -0.247 4.247 5 C -0.174 4.174 6 S 0.273 5.727 7 C -0.403 4.403 8 C -0.063 4.063 9 C -0.144 4.144 10 C 0.201 3.799 11 C -0.457 4.457 12 H 0.114 0.886 13 C -0.147 4.147 14 N -0.362 5.362 15 Si 0.730 3.270 16 H -0.182 1.182 17 H -0.195 1.195 18 H -0.178 1.178 19 C -0.206 4.206 20 C -0.003 4.003 21 N -0.189 5.189 22 H 0.076 0.924 23 H 0.069 0.931 24 H 0.073 0.927 25 H 0.087 0.913 26 H 0.083 0.917 27 H 0.119 0.881 28 H 0.164 0.836 29 H 0.145 0.855 30 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -1.301 0.554 -5.297 5.482 hybrid contribution 0.382 1.208 1.583 2.027 sum -0.919 1.762 -3.714 4.212 Atomic orbital electron populations 1.21687 0.95078 1.00840 1.02263 1.20582 0.96010 0.93888 1.02054 1.18981 0.93028 0.93428 0.91362 1.19093 1.15691 0.93722 0.96166 1.22456 1.02483 0.97736 0.94704 1.83508 1.70788 1.07552 1.10851 1.24643 1.17149 1.02037 0.96443 1.19762 0.95392 0.96083 0.95014 1.18940 1.10142 0.93425 0.91858 1.19129 0.83127 0.87213 0.90428 1.19587 1.06305 1.18820 1.00986 0.88626 1.26102 0.94312 0.97164 0.97122 1.69739 1.02194 1.31639 1.32601 0.86318 0.79363 0.80228 0.81104 1.18203 1.19529 1.17846 1.16463 1.24554 0.93814 0.85734 1.25492 0.91065 0.91476 0.92243 1.81026 1.15146 1.11497 1.11181 0.92435 0.93135 0.92692 0.91316 0.91695 0.88125 0.83622 0.85481 0.89286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.15 9.89 37.16 0.37 -1.78 16 2 C -0.09 -1.48 5.55 -27.88 -0.15 -1.64 16 3 C 0.04 0.76 5.14 -104.47 -0.54 0.23 16 4 C -0.22 -4.51 9.55 -39.29 -0.38 -4.88 16 5 C -0.06 -1.24 6.48 -38.38 -0.25 -1.49 16 6 S 0.01 0.22 23.30 -107.50 -2.50 -2.29 16 7 C -0.27 -5.14 11.11 28.85 0.32 -4.82 16 8 C -0.03 -0.71 8.26 -40.81 -0.34 -1.05 16 9 C -0.14 -3.13 5.52 -104.71 -0.58 -3.71 16 10 C 0.21 5.01 5.66 -102.10 -0.58 4.43 16 11 C -0.43 -10.20 8.22 -38.16 -0.31 -10.51 16 12 H 0.10 2.26 7.75 -52.49 -0.41 1.85 16 13 C 0.08 1.73 3.85 -17.27 -0.07 1.67 16 14 N -0.74 -16.68 10.82 55.57 0.60 -16.08 16 15 Si 0.91 16.51 29.61 -169.99 -5.03 11.48 16 16 H -0.26 -4.80 7.11 56.52 0.40 -4.40 16 17 H -0.27 -4.73 7.11 56.52 0.40 -4.33 16 18 H -0.25 -4.57 7.11 56.52 0.40 -4.16 16 19 C -0.20 -4.51 5.93 -104.28 -0.62 -5.12 16 20 C 0.31 7.08 12.77 -22.48 -0.29 6.79 16 21 N -0.51 -12.01 18.54 41.84 0.78 -11.24 16 22 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 23 H 0.05 0.65 8.14 -51.92 -0.42 0.23 16 24 H 0.05 0.92 7.90 -51.93 -0.41 0.51 16 25 H 0.07 1.01 8.00 -51.93 -0.42 0.60 16 26 H 0.06 1.14 7.25 -51.93 -0.38 0.76 16 27 H 0.10 1.81 8.01 -52.48 -0.42 1.39 16 28 H 0.15 2.35 8.06 -52.49 -0.42 1.93 16 29 H 0.13 2.69 6.07 -52.49 -0.32 2.37 16 30 H 0.30 5.99 8.29 -40.82 -0.34 5.65 16 LS Contribution 279.13 15.07 4.21 4.21 Total: -1.00 -24.90 279.13 -8.11 -33.01 By element: Atomic # 1 Polarization: 5.55 SS G_CDS: -2.75 Total: 2.80 kcal Atomic # 6 Polarization: -18.48 SS G_CDS: -3.41 Total: -21.89 kcal Atomic # 7 Polarization: -28.70 SS G_CDS: 1.38 Total: -27.32 kcal Atomic # 14 Polarization: 16.51 SS G_CDS: -5.03 Total: 11.48 kcal Atomic # 16 Polarization: 0.22 SS G_CDS: -2.50 Total: -2.29 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -24.90 -8.11 -33.01 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396216371.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.849 kcal (2) G-P(sol) polarization free energy of solvation -24.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.008 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds