Wall clock time and date at job start Mon Mar 30 2020 06:43:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50704 * 109.46567 * 2 1 4 4 C 1.37349 * 119.54485 * 265.01867 * 3 2 1 5 5 C 1.39884 * 122.46382 * 179.97438 * 4 3 2 6 6 S 1.76215 * 130.12834 * 180.02562 * 5 4 3 7 7 C 1.75483 * 91.54922 * 179.97438 * 6 5 4 8 8 C 1.32733 * 110.67724 * 359.77560 * 7 6 5 9 9 C 1.39794 * 120.67331 * 359.97438 * 5 4 3 10 10 C 1.47894 * 118.27413 * 0.02562 * 9 5 4 11 11 C 1.39899 * 120.71185 * 180.02562 * 10 9 5 12 12 H 1.08001 * 120.00161 * 140.76707 * 11 10 9 13 13 C 1.40359 * 119.99904 * 320.76376 * 11 10 9 14 14 N 1.30627 * 120.00287 * 339.71407 * 13 11 10 15 15 Si 1.86800 * 120.00078 * 159.71830 * 13 11 10 16 16 H 1.48506 * 109.47184 * 59.99820 * 15 13 11 17 17 H 1.48498 * 109.47458 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47260 * 300.00170 * 15 13 11 19 19 C 1.39515 * 119.53895 * 85.00668 * 3 2 1 20 20 C 1.43191 * 120.45197 * 359.97438 * 19 3 2 21 21 N 3.55602 * 90.33719 * 74.36592 * 2 1 3 22 22 H 1.09000 * 109.47299 * 60.00045 * 1 2 3 23 23 H 1.09008 * 109.47065 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47378 * 299.99465 * 1 2 3 25 25 H 1.08998 * 109.47378 * 240.00535 * 2 1 3 26 26 H 1.09000 * 109.47299 * 119.99955 * 2 1 3 27 27 H 1.08006 * 118.76883 * 0.02562 * 4 3 2 28 28 H 1.08000 * 124.66104 * 180.02562 * 7 6 5 29 29 H 1.07997 * 122.09987 * 180.26170 * 8 7 6 30 30 H 0.96998 * 120.00200 * 180.40371 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.3557 2.0249 -1.1904 5 6 2.8266 3.3402 -1.2614 6 16 3.2960 4.3045 -2.6596 7 6 3.6863 5.6788 -1.6405 8 6 3.4626 5.3939 -0.3636 9 6 2.9880 4.1035 -0.1014 10 6 2.6489 3.4837 1.1979 11 6 2.7905 4.2013 2.3904 12 1 2.0525 4.1001 3.1725 13 6 3.8918 5.0526 2.5706 14 7 4.9652 4.8950 1.8431 15 14 3.8225 6.4112 3.8508 16 1 3.6062 5.8153 5.1938 17 1 5.1023 7.1643 3.8432 18 1 2.7036 7.3344 3.5330 19 6 2.1618 2.1046 1.2092 20 6 1.8209 1.4656 2.4444 21 7 1.5509 0.9583 3.4244 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5137 0.8900 25 1 1.8934 -0.5137 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 2.2415 1.4635 -2.1060 28 1 4.0539 6.6274 -2.0029 29 1 3.6377 6.1120 0.4238 30 1 5.7284 5.4796 1.9717 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396216371.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:32 Heat of formation + Delta-G solvation = 38.657326 kcal Electronic energy + Delta-G solvation = -16127.511822 eV Core-core repulsion = 13591.794713 eV Total energy + Delta-G solvation = -2535.717109 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.057 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.04778 -37.56882 -36.43351 -35.63834 -33.31611 -31.75426 -29.48241 -27.35102 -25.12917 -23.90054 -22.58778 -21.50252 -19.28971 -18.41364 -17.69544 -17.22535 -16.47176 -15.66205 -15.14715 -14.89336 -14.62004 -14.38810 -14.17591 -13.86744 -13.78850 -13.49596 -13.32495 -13.17838 -13.10077 -12.89134 -12.64835 -12.22486 -12.04736 -11.81857 -11.70012 -11.33604 -11.24490 -10.91594 -9.95711 -9.02835 -8.95769 -8.32558 -6.60043 0.06412 0.49285 0.96988 1.32986 1.36578 1.42404 1.46069 1.69186 2.08713 2.09766 2.42938 2.60018 3.42427 3.62390 4.00429 4.21748 4.40453 4.51427 4.55626 4.75038 4.81822 4.91249 4.95074 5.05236 5.11871 5.25999 5.33410 5.36431 5.40505 5.81216 5.87110 5.91628 6.06631 6.19158 6.51087 6.64902 7.01463 8.00048 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.015164 B = 0.011070 C = 0.006708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1846.065783 B = 2528.711135 C = 4173.337473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.085 4.085 3 C 0.034 3.966 4 C -0.220 4.220 5 C -0.087 4.087 6 S 0.069 5.931 7 C -0.258 4.258 8 C -0.061 4.061 9 C -0.156 4.156 10 C 0.184 3.816 11 C -0.461 4.461 12 H 0.081 0.919 13 C 0.053 3.947 14 N -0.765 5.765 15 Si 0.968 3.032 16 H -0.267 1.267 17 H -0.254 1.254 18 H -0.251 1.251 19 C -0.225 4.225 20 C 0.313 3.687 21 N -0.530 5.530 22 H 0.067 0.933 23 H 0.076 0.924 24 H 0.031 0.969 25 H 0.096 0.904 26 H 0.053 0.947 27 H 0.128 0.872 28 H 0.178 0.822 29 H 0.122 0.878 30 H 0.304 0.696 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.984 1.865 -7.027 7.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.123 4.123 3 C 0.029 3.971 4 C -0.244 4.244 5 C -0.203 4.203 6 S 0.331 5.669 7 C -0.391 4.391 8 C -0.090 4.090 9 C -0.164 4.164 10 C 0.176 3.824 11 C -0.487 4.487 12 H 0.099 0.901 13 C -0.171 4.171 14 N -0.386 5.386 15 Si 0.787 3.213 16 H -0.191 1.191 17 H -0.177 1.177 18 H -0.174 1.174 19 C -0.233 4.233 20 C 0.004 3.996 21 N -0.211 5.211 22 H 0.086 0.914 23 H 0.095 0.905 24 H 0.050 0.950 25 H 0.115 0.885 26 H 0.071 0.929 27 H 0.146 0.854 28 H 0.195 0.805 29 H 0.140 0.860 30 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -1.037 1.011 -7.165 7.310 hybrid contribution 0.318 1.059 2.001 2.286 sum -0.720 2.070 -5.164 5.610 Atomic orbital electron populations 1.21655 0.93740 1.02370 1.01590 1.20638 0.97078 0.91747 1.02807 1.19340 0.92296 0.94952 0.90540 1.19445 1.14349 0.93543 0.97071 1.22889 1.02845 0.98634 0.95982 1.83252 1.69413 1.05839 1.08395 1.25115 1.14629 1.03471 0.95869 1.19779 0.97433 0.95792 0.96017 1.19178 1.10725 0.94478 0.92016 1.19483 0.83752 0.87829 0.91297 1.19674 1.07175 1.20873 1.01017 0.90072 1.26687 0.93368 0.98371 0.98681 1.69741 1.02691 1.32472 1.33726 0.85444 0.80047 0.77698 0.78104 1.19140 1.17749 1.17437 1.16748 1.26010 0.94040 0.86494 1.25679 0.90589 0.91041 0.92251 1.80992 1.16240 1.12298 1.11534 0.91432 0.90513 0.95006 0.88524 0.92874 0.85415 0.80471 0.86026 0.88386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.92 9.89 71.98 0.71 -3.21 16 2 C -0.09 -2.75 5.55 29.85 0.17 -2.59 16 3 C 0.03 1.38 5.14 -19.76 -0.10 1.27 16 4 C -0.22 -8.57 9.55 22.46 0.21 -8.36 16 5 C -0.09 -3.64 6.48 23.05 0.15 -3.49 16 6 S 0.07 2.37 23.30 -56.49 -1.32 1.06 16 7 C -0.26 -9.20 11.11 66.65 0.74 -8.46 16 8 C -0.06 -2.57 8.26 21.52 0.18 -2.40 16 9 C -0.16 -7.21 5.52 -19.92 -0.11 -7.32 16 10 C 0.18 9.10 5.66 -18.23 -0.10 8.99 16 11 C -0.46 -22.70 8.22 23.19 0.19 -22.51 16 12 H 0.08 4.07 7.75 -2.91 -0.02 4.05 16 13 C 0.05 2.36 3.85 85.39 0.33 2.68 16 14 N -0.77 -34.76 10.82 21.90 0.24 -34.52 16 15 Si 0.97 34.05 29.61 68.60 2.03 36.08 16 16 H -0.27 -9.68 7.11 99.48 0.71 -8.98 16 17 H -0.25 -8.16 7.11 99.48 0.71 -7.46 16 18 H -0.25 -8.58 7.11 99.48 0.71 -7.87 16 19 C -0.22 -10.51 5.93 -19.64 -0.12 -10.63 16 20 C 0.31 14.93 12.77 88.33 1.13 16.06 16 21 N -0.53 -25.80 18.54 19.00 0.35 -25.45 16 22 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 23 H 0.08 1.80 8.14 -2.38 -0.02 1.78 16 24 H 0.03 1.04 7.90 -2.39 -0.02 1.02 16 25 H 0.10 2.57 8.00 -2.39 -0.02 2.55 16 26 H 0.05 1.84 7.25 -2.39 -0.02 1.82 16 27 H 0.13 4.19 8.01 -2.91 -0.02 4.17 16 28 H 0.18 5.08 8.06 -2.91 -0.02 5.05 16 29 H 0.12 5.16 6.07 -2.91 -0.02 5.14 16 30 H 0.30 12.28 8.29 -92.71 -0.77 11.51 16 Total: -1.00 -54.07 279.13 5.85 -48.22 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: 1.17 Total: 14.57 kcal Atomic # 6 Polarization: -43.33 SS G_CDS: 3.38 Total: -39.95 kcal Atomic # 7 Polarization: -60.55 SS G_CDS: 0.59 Total: -59.97 kcal Atomic # 14 Polarization: 34.05 SS G_CDS: 2.03 Total: 36.08 kcal Atomic # 16 Polarization: 2.37 SS G_CDS: -1.32 Total: 1.06 kcal Total: -54.07 5.85 -48.22 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396216371.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.874 kcal (2) G-P(sol) polarization free energy of solvation -54.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.217 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds