Wall clock time and date at job start Mon Mar 30 2020 06:44:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50700 * 109.46884 * 2 1 4 4 C 1.38096 * 119.40615 * 90.00376 * 3 2 1 5 5 C 1.39817 * 121.46605 * 179.97438 * 4 3 2 6 6 S 1.75837 * 130.41561 * 180.02562 * 5 4 3 7 7 C 1.70042 * 93.03187 * 179.80399 * 6 5 4 8 8 C 1.35485 * 111.95252 * 0.30558 * 7 6 5 9 9 C 1.43203 * 123.12009 * 179.90414 * 8 7 6 10 10 N 7.66997 * 109.08711 * 347.80004 * 2 1 3 11 11 C 1.39351 * 119.71280 * 0.02562 * 5 4 3 12 12 C 1.47357 * 118.58792 * 0.02562 * 11 5 4 13 13 C 1.40706 * 120.45755 * 179.97438 * 12 11 5 14 14 H 1.08002 * 119.99622 * 329.03520 * 13 12 11 15 15 C 1.39967 * 120.00532 * 149.03472 * 13 12 11 16 16 N 1.30843 * 120.00526 * 162.74613 * 15 13 12 17 17 Si 1.86808 * 119.99652 * 342.74619 * 15 13 12 18 18 H 1.48502 * 109.46989 * 95.30810 * 17 15 13 19 19 H 1.48501 * 109.46767 * 215.30635 * 17 15 13 20 20 H 1.48503 * 109.47329 * 335.30488 * 17 15 13 21 21 C 1.37602 * 119.40727 * 270.02100 * 3 2 1 22 22 H 1.08995 * 109.47011 * 299.99690 * 1 2 3 23 23 H 1.08996 * 109.46857 * 60.00208 * 1 2 3 24 24 H 1.08998 * 109.46713 * 180.02562 * 1 2 3 25 25 H 1.08992 * 109.47132 * 239.99802 * 2 1 3 26 26 H 1.09006 * 109.46735 * 119.99854 * 2 1 3 27 27 H 1.07994 * 119.26852 * 359.97438 * 4 3 2 28 28 H 1.07994 * 124.01833 * 180.17827 * 7 6 5 29 29 H 0.96997 * 120.00278 * 179.97438 * 16 15 13 30 30 H 1.08007 * 120.02126 * 0.02562 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2584 2.0601 1.2030 5 6 2.7246 3.3773 1.2533 6 16 3.0890 4.4058 2.6322 7 6 3.5571 5.7118 1.6490 8 6 3.4478 5.4182 0.3309 9 6 3.7777 6.3472 -0.7077 10 7 4.0382 7.0846 -1.5317 11 6 2.9691 4.0691 0.0686 12 6 2.7251 3.3824 -1.2121 13 6 2.9582 4.0440 -2.4319 14 1 2.8263 5.1138 -2.4997 15 6 3.3612 3.3158 -3.5573 16 7 3.2550 3.8429 -4.7501 17 14 4.0506 1.5913 -3.3561 18 1 2.9638 0.5981 -3.5498 19 1 5.1155 1.3632 -4.3657 20 1 4.6206 1.4419 -1.9930 21 6 2.2571 2.0580 -1.1987 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.8934 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 2.0709 1.5309 2.1256 28 1 3.8988 6.6628 2.0300 29 1 3.5346 3.3384 -5.5299 30 1 2.0733 1.5403 -2.1287 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396216423.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:40 Heat of formation + Delta-G solvation = 47.700920 kcal Electronic energy + Delta-G solvation = -16039.480352 eV Core-core repulsion = 13504.155403 eV Total energy + Delta-G solvation = -2535.324949 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.057 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.60528 -36.31119 -34.64105 -34.22436 -32.02160 -30.53648 -27.93402 -25.33787 -24.20857 -22.90970 -21.38994 -19.86312 -17.91532 -17.02378 -16.18965 -15.17381 -15.09382 -14.33771 -14.03059 -13.51428 -13.37795 -13.03325 -12.78504 -12.43394 -12.30613 -12.20138 -12.10751 -11.68997 -11.36556 -11.24746 -11.12304 -10.89545 -10.58054 -10.46009 -9.92073 -9.86413 -9.81816 -9.35816 -8.45280 -7.60678 -7.26350 -7.03405 -4.72105 1.30327 2.19660 2.34233 2.51945 2.60541 2.95033 3.07068 3.16465 3.48663 3.77274 4.04946 4.28725 4.89790 5.04103 5.34323 5.44168 5.47923 5.81012 5.97023 6.01453 6.11438 6.20163 6.24216 6.45384 6.50892 6.55802 6.58680 6.84575 6.99246 7.23157 7.39706 7.63536 7.69775 8.02385 8.25437 8.32685 8.42757 9.72105 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.014322 B = 0.012020 C = 0.007087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1954.545949 B = 2328.926697 C = 3949.732496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.085 4.085 3 C -0.002 4.002 4 C -0.225 4.225 5 C -0.079 4.079 6 S 0.119 5.881 7 C -0.248 4.248 8 C 0.016 3.984 9 C 0.286 3.714 10 N -0.432 5.432 11 C -0.151 4.151 12 C 0.130 3.870 13 C -0.411 4.411 14 H 0.101 0.899 15 C 0.081 3.919 16 N -0.776 5.776 17 Si 0.915 3.085 18 H -0.264 1.264 19 H -0.287 1.287 20 H -0.237 1.237 21 C -0.255 4.255 22 H 0.055 0.945 23 H 0.056 0.944 24 H 0.048 0.952 25 H 0.063 0.937 26 H 0.064 0.936 27 H 0.100 0.900 28 H 0.160 0.840 29 H 0.293 0.707 30 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.429 -5.557 9.150 10.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.123 4.123 3 C -0.005 4.005 4 C -0.250 4.250 5 C -0.194 4.194 6 S 0.385 5.615 7 C -0.387 4.387 8 C -0.002 4.002 9 C -0.030 4.030 10 N -0.109 5.109 11 C -0.157 4.157 12 C 0.124 3.876 13 C -0.438 4.438 14 H 0.118 0.882 15 C -0.143 4.143 16 N -0.397 5.397 17 Si 0.740 3.260 18 H -0.189 1.189 19 H -0.214 1.214 20 H -0.160 1.160 21 C -0.276 4.276 22 H 0.074 0.926 23 H 0.076 0.924 24 H 0.067 0.933 25 H 0.081 0.919 26 H 0.083 0.917 27 H 0.118 0.882 28 H 0.177 0.823 29 H 0.104 0.896 30 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -1.043 -4.452 9.153 10.232 hybrid contribution 0.283 -0.559 -1.462 1.591 sum -0.760 -5.011 7.691 9.211 Atomic orbital electron populations 1.21705 0.95212 1.00676 1.02389 1.20553 0.95926 0.94064 1.01737 1.19125 0.94727 0.93881 0.92773 1.19309 1.16215 0.93123 0.96355 1.22185 1.04316 0.98372 0.94510 1.82339 1.67587 1.03185 1.08369 1.24511 1.13126 1.05063 0.96026 1.15910 1.04725 0.91324 0.88261 1.25094 0.93283 0.92217 0.92402 1.81123 1.09369 1.11697 1.08692 1.19592 1.10992 0.91805 0.93340 1.18309 0.88473 0.90796 0.90005 1.19705 1.34655 0.98073 0.91318 0.88153 1.26370 0.92950 1.00941 0.93992 1.69682 1.31050 1.39351 0.99592 0.86207 0.79140 0.80144 0.80531 1.18917 1.21439 1.15976 1.20557 1.13983 0.96898 0.96196 0.92593 0.92448 0.93278 0.91857 0.91698 0.88165 0.82264 0.89632 0.87476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 9.90 37.16 0.37 -1.61 16 2 C -0.09 -1.34 6.03 -27.88 -0.17 -1.50 16 3 C 0.00 -0.04 5.10 -104.91 -0.54 -0.58 16 4 C -0.22 -4.31 9.64 -39.04 -0.38 -4.68 16 5 C -0.08 -1.57 6.46 -38.58 -0.25 -1.82 16 6 S 0.12 1.89 22.98 -107.50 -2.47 -0.58 16 7 C -0.25 -4.22 10.65 29.75 0.32 -3.90 16 8 C 0.02 0.33 5.84 -106.05 -0.62 -0.29 16 9 C 0.29 6.34 13.14 -22.47 -0.30 6.05 16 10 N -0.43 -10.13 18.22 41.84 0.76 -9.36 16 11 C -0.15 -3.38 6.19 -102.87 -0.64 -4.02 16 12 C 0.13 3.14 5.26 -104.41 -0.55 2.59 16 13 C -0.41 -10.70 8.78 -38.00 -0.33 -11.03 16 14 H 0.10 2.81 6.05 -52.49 -0.32 2.49 16 15 C 0.08 2.03 5.41 -17.33 -0.09 1.94 16 16 N -0.78 -19.85 13.93 55.55 0.77 -19.08 16 17 Si 0.91 19.63 24.53 -169.99 -4.17 15.46 16 18 H -0.26 -5.35 6.73 56.52 0.38 -4.97 16 19 H -0.29 -5.98 7.11 56.52 0.40 -5.58 16 20 H -0.24 -5.21 6.84 56.52 0.39 -4.82 16 21 C -0.25 -5.67 6.74 -38.97 -0.26 -5.93 16 22 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 23 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 24 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.06 0.98 8.07 -51.93 -0.42 0.56 16 26 H 0.06 0.90 8.07 -51.93 -0.42 0.48 16 27 H 0.10 1.68 8.06 -52.49 -0.42 1.26 16 28 H 0.16 2.22 8.06 -52.49 -0.42 1.80 16 29 H 0.29 6.69 8.30 -40.82 -0.34 6.36 16 30 H 0.11 2.36 4.81 -52.48 -0.25 2.11 16 LS Contribution 275.34 15.07 4.15 4.15 Total: -1.00 -26.54 275.34 -7.08 -33.62 By element: Atomic # 1 Polarization: 3.27 SS G_CDS: -2.69 Total: 0.58 kcal Atomic # 6 Polarization: -21.36 SS G_CDS: -3.44 Total: -24.80 kcal Atomic # 7 Polarization: -29.98 SS G_CDS: 1.54 Total: -28.44 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -4.17 Total: 15.46 kcal Atomic # 16 Polarization: 1.89 SS G_CDS: -2.47 Total: -0.58 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -26.54 -7.08 -33.62 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396216423.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.326 kcal (2) G-P(sol) polarization free energy of solvation -26.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.625 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds