Wall clock time and date at job start Mon Mar 30 2020 06:44:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50700 * 109.46884 * 2 1 4 4 C 1.38096 * 119.40615 * 90.00376 * 3 2 1 5 5 C 1.39817 * 121.46605 * 179.97438 * 4 3 2 6 6 S 1.75837 * 130.41561 * 180.02562 * 5 4 3 7 7 C 1.70042 * 93.03187 * 179.80399 * 6 5 4 8 8 C 1.35485 * 111.95252 * 0.30558 * 7 6 5 9 9 C 1.43203 * 123.12009 * 179.90414 * 8 7 6 10 10 N 7.66997 * 109.08711 * 347.80004 * 2 1 3 11 11 C 1.39351 * 119.71280 * 0.02562 * 5 4 3 12 12 C 1.47357 * 118.58792 * 0.02562 * 11 5 4 13 13 C 1.40706 * 120.45755 * 179.97438 * 12 11 5 14 14 H 1.08002 * 119.99622 * 329.03520 * 13 12 11 15 15 C 1.39967 * 120.00532 * 149.03472 * 13 12 11 16 16 N 1.30843 * 120.00526 * 162.74613 * 15 13 12 17 17 Si 1.86808 * 119.99652 * 342.74619 * 15 13 12 18 18 H 1.48502 * 109.46989 * 95.30810 * 17 15 13 19 19 H 1.48501 * 109.46767 * 215.30635 * 17 15 13 20 20 H 1.48503 * 109.47329 * 335.30488 * 17 15 13 21 21 C 1.37602 * 119.40727 * 270.02100 * 3 2 1 22 22 H 1.08995 * 109.47011 * 299.99690 * 1 2 3 23 23 H 1.08996 * 109.46857 * 60.00208 * 1 2 3 24 24 H 1.08998 * 109.46713 * 180.02562 * 1 2 3 25 25 H 1.08992 * 109.47132 * 239.99802 * 2 1 3 26 26 H 1.09006 * 109.46735 * 119.99854 * 2 1 3 27 27 H 1.07994 * 119.26852 * 359.97438 * 4 3 2 28 28 H 1.07994 * 124.01833 * 180.17827 * 7 6 5 29 29 H 0.96997 * 120.00278 * 179.97438 * 16 15 13 30 30 H 1.08007 * 120.02126 * 0.02562 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2584 2.0601 1.2030 5 6 2.7246 3.3773 1.2533 6 16 3.0890 4.4058 2.6322 7 6 3.5571 5.7118 1.6490 8 6 3.4478 5.4182 0.3309 9 6 3.7777 6.3472 -0.7077 10 7 4.0382 7.0846 -1.5317 11 6 2.9691 4.0691 0.0686 12 6 2.7251 3.3824 -1.2121 13 6 2.9582 4.0440 -2.4319 14 1 2.8263 5.1138 -2.4997 15 6 3.3612 3.3158 -3.5573 16 7 3.2550 3.8429 -4.7501 17 14 4.0506 1.5913 -3.3561 18 1 2.9638 0.5981 -3.5498 19 1 5.1155 1.3632 -4.3657 20 1 4.6206 1.4419 -1.9930 21 6 2.2571 2.0580 -1.1987 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.8934 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 2.0709 1.5309 2.1256 28 1 3.8988 6.6628 2.0300 29 1 3.5346 3.3384 -5.5299 30 1 2.0733 1.5403 -2.1287 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396216423.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:39 Heat of formation + Delta-G solvation = 33.583825 kcal Electronic energy + Delta-G solvation = -16040.092515 eV Core-core repulsion = 13504.155403 eV Total energy + Delta-G solvation = -2535.937112 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.057 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.20273 -37.94180 -36.23763 -35.91714 -33.49493 -32.15798 -29.40108 -27.04980 -25.73856 -24.25005 -23.05005 -21.40556 -19.59819 -18.64203 -17.70168 -16.84844 -16.69572 -15.86994 -15.44915 -15.17335 -14.90986 -14.57853 -14.24303 -14.05710 -13.89571 -13.80295 -13.62230 -13.10220 -13.06105 -12.86631 -12.66357 -12.35202 -11.97063 -11.78925 -11.57700 -11.42877 -11.39861 -10.99891 -10.07559 -9.14892 -9.03593 -8.54313 -6.52994 -0.22810 0.66111 0.74497 0.86899 1.08084 1.21033 1.36809 1.44566 1.78075 2.04316 2.38313 2.55178 3.31121 3.33749 3.90776 4.09025 4.29816 4.45186 4.57285 4.64816 4.75109 4.82581 4.95270 5.00283 5.06375 5.15481 5.26052 5.39570 5.49336 5.58241 5.71345 6.00228 6.03653 6.27261 6.55931 6.59936 6.67613 8.02465 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.014322 B = 0.012020 C = 0.007087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1954.545949 B = 2328.926697 C = 3949.732496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.085 4.085 3 C -0.013 4.013 4 C -0.202 4.202 5 C -0.117 4.117 6 S 0.234 5.766 7 C -0.206 4.206 8 C -0.038 4.038 9 C 0.298 3.702 10 N -0.476 5.476 11 C -0.164 4.164 12 C 0.109 3.891 13 C -0.461 4.461 14 H 0.061 0.939 15 C 0.046 3.954 16 N -0.834 5.834 17 Si 0.966 3.034 18 H -0.247 1.247 19 H -0.281 1.281 20 H -0.246 1.246 21 C -0.266 4.266 22 H 0.060 0.940 23 H 0.038 0.962 24 H 0.077 0.923 25 H 0.062 0.938 26 H 0.092 0.908 27 H 0.137 0.863 28 H 0.198 0.802 29 H 0.298 0.702 30 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.700 -7.561 13.965 15.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.123 4.123 3 C -0.016 4.016 4 C -0.226 4.226 5 C -0.232 4.232 6 S 0.501 5.499 7 C -0.346 4.346 8 C -0.057 4.057 9 C -0.017 4.017 10 N -0.154 5.154 11 C -0.171 4.171 12 C 0.104 3.896 13 C -0.489 4.489 14 H 0.079 0.921 15 C -0.171 4.171 16 N -0.458 5.458 17 Si 0.788 3.212 18 H -0.171 1.171 19 H -0.208 1.208 20 H -0.169 1.169 21 C -0.288 4.288 22 H 0.079 0.921 23 H 0.057 0.943 24 H 0.095 0.905 25 H 0.081 0.919 26 H 0.111 0.889 27 H 0.155 0.845 28 H 0.215 0.785 29 H 0.108 0.892 30 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -1.330 -6.474 13.990 15.473 hybrid contribution 0.309 0.117 -2.387 2.410 sum -1.022 -6.356 11.603 13.269 Atomic orbital electron populations 1.21688 0.93863 1.02373 1.01751 1.20646 0.96995 0.91474 1.03141 1.19600 0.94025 0.95982 0.91968 1.19846 1.12594 0.92680 0.97526 1.22686 1.04927 0.99492 0.96130 1.82054 1.64338 0.99520 1.03945 1.25257 1.07314 1.07058 0.94956 1.16022 1.09184 0.91152 0.89326 1.25485 0.92182 0.91779 0.92244 1.81095 1.11432 1.13465 1.09365 1.19901 1.10636 0.92837 0.93776 1.18543 0.88747 0.91983 0.90287 1.19542 1.39576 0.96482 0.93326 0.92054 1.27021 0.92765 1.03875 0.93477 1.69729 1.34653 1.41160 1.00282 0.85459 0.79026 0.77000 0.79755 1.17119 1.20764 1.16945 1.20671 1.14282 0.96468 0.97365 0.92065 0.94288 0.90458 0.91898 0.88916 0.84502 0.78455 0.89175 0.88176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.39 9.90 71.98 0.71 -2.68 16 2 C -0.09 -2.36 6.03 29.85 0.18 -2.18 16 3 C -0.01 -0.47 5.10 -20.05 -0.10 -0.57 16 4 C -0.20 -6.88 9.64 22.62 0.22 -6.66 16 5 C -0.12 -4.26 6.46 22.92 0.15 -4.11 16 6 S 0.23 6.06 22.98 -56.49 -1.30 4.76 16 7 C -0.21 -6.10 10.65 67.18 0.72 -5.39 16 8 C -0.04 -1.55 5.84 -20.79 -0.12 -1.67 16 9 C 0.30 13.69 13.14 88.33 1.16 14.85 16 10 N -0.48 -23.62 18.22 19.01 0.35 -23.27 16 11 C -0.16 -7.29 6.19 -18.73 -0.12 -7.41 16 12 C 0.11 5.46 5.26 -19.73 -0.10 5.35 16 13 C -0.46 -25.89 8.78 23.29 0.20 -25.69 16 14 H 0.06 3.79 6.05 -2.91 -0.02 3.78 16 15 C 0.05 2.45 5.41 85.26 0.46 2.91 16 16 N -0.83 -46.42 13.93 21.83 0.30 -46.12 16 17 Si 0.97 42.19 24.53 68.60 1.68 43.87 16 18 H -0.25 -9.87 6.73 99.48 0.67 -9.20 16 19 H -0.28 -11.70 7.11 99.48 0.71 -11.00 16 20 H -0.25 -10.87 6.84 99.48 0.68 -10.19 16 21 C -0.27 -11.89 6.74 22.66 0.15 -11.73 16 22 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 23 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 24 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 25 H 0.06 1.76 8.07 -2.39 -0.02 1.74 16 26 H 0.09 2.07 8.07 -2.38 -0.02 2.05 16 27 H 0.14 3.66 8.06 -2.91 -0.02 3.64 16 28 H 0.20 4.35 8.06 -2.91 -0.02 4.33 16 29 H 0.30 14.80 8.30 -92.71 -0.77 14.03 16 30 H 0.10 4.51 4.81 -2.91 -0.01 4.49 16 Total: -1.00 -63.84 275.34 5.66 -58.18 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: 1.11 Total: 7.54 kcal Atomic # 6 Polarization: -48.48 SS G_CDS: 3.51 Total: -44.97 kcal Atomic # 7 Polarization: -70.05 SS G_CDS: 0.65 Total: -69.40 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 1.68 Total: 43.87 kcal Atomic # 16 Polarization: 6.06 SS G_CDS: -1.30 Total: 4.76 kcal Total: -63.84 5.66 -58.18 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396216423.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.768 kcal (2) G-P(sol) polarization free energy of solvation -63.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.185 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds