Wall clock time and date at job start Mon Mar 30 2020 06:46:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50692 * 109.47129 * 2 1 4 4 C 1.38943 * 119.78013 * 270.25359 * 3 2 1 5 5 S 1.76228 * 129.76194 * 359.94906 * 4 3 2 6 6 C 1.75426 * 91.59858 * 180.28399 * 5 4 3 7 7 C 1.32392 * 110.90502 * 0.02562 * 6 5 4 8 8 C 1.40506 * 120.93912 * 180.26355 * 4 3 2 9 9 C 1.41456 * 119.73137 * 359.74377 * 8 4 3 10 10 C 1.38032 * 120.74117 * 0.02562 * 9 8 4 11 11 C 1.43209 * 120.35886 * 180.02562 * 10 9 8 12 12 N 6.04472 * 106.16242 * 35.71324 * 2 1 3 13 13 C 1.40263 * 119.77540 * 90.00517 * 3 2 1 14 14 C 1.40474 * 120.56473 * 0.02562 * 13 3 2 15 15 H 1.07998 * 120.00694 * 315.29269 * 14 13 3 16 16 C 1.40138 * 119.99842 * 135.29824 * 14 13 3 17 17 N 1.30743 * 119.99997 * 154.07279 * 16 14 13 18 18 Si 1.86803 * 119.99674 * 334.06961 * 16 14 13 19 19 H 1.48508 * 109.46973 * 94.68274 * 18 16 14 20 20 H 1.48499 * 109.47370 * 214.67863 * 18 16 14 21 21 H 1.48492 * 109.47155 * 334.68428 * 18 16 14 22 22 H 1.09007 * 109.47141 * 299.99692 * 1 2 3 23 23 H 1.08999 * 109.47380 * 59.99628 * 1 2 3 24 24 H 1.09003 * 109.47158 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47128 * 240.00024 * 2 1 3 26 26 H 1.09006 * 109.47078 * 120.00127 * 2 1 3 27 27 H 1.08004 * 124.54553 * 179.97438 * 6 5 4 28 28 H 1.08004 * 122.05022 * 180.02562 * 7 6 5 29 29 H 1.08001 * 119.62947 * 179.97438 * 9 8 4 30 30 H 0.97005 * 119.99646 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 6 2.2573 2.0731 -1.2059 5 16 2.0462 1.4944 -2.8570 6 6 2.5927 3.0257 -3.5158 7 6 2.8993 3.8743 -2.5470 8 6 2.7307 3.3958 -1.2344 9 6 2.9780 4.0786 -0.0205 10 6 2.7600 3.4601 1.1941 11 6 3.0126 4.1593 2.4181 12 7 3.2126 4.7140 3.3890 13 6 2.2646 2.0774 1.2175 14 6 2.0335 1.4218 2.4381 15 1 1.1318 0.8442 2.5788 16 6 2.9729 1.5173 3.4736 17 7 2.5926 1.3756 4.7164 18 14 4.7686 1.8472 3.0780 19 1 5.0359 3.3051 3.1698 20 1 5.6300 1.1240 4.0476 21 1 5.0672 1.3749 1.7022 22 1 -0.3634 0.5138 0.8901 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0277 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 2.6696 3.2463 -4.5703 28 1 3.2560 4.8730 -2.7514 29 1 3.3422 5.0951 -0.0443 30 1 3.2430 1.4413 5.4331 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396216476.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:38 Heat of formation + Delta-G solvation = 56.242517 kcal Electronic energy + Delta-G solvation = -16282.817959 eV Core-core repulsion = 13747.863402 eV Total energy + Delta-G solvation = -2534.954558 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.057 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -38.79695 -36.07883 -35.13778 -33.52084 -32.58982 -29.59520 -28.89270 -25.62011 -23.64352 -22.37855 -21.43237 -19.56796 -18.08013 -16.81780 -16.34646 -15.75962 -15.05624 -13.87081 -13.71530 -13.50647 -13.28939 -13.02053 -12.83344 -12.73614 -12.54016 -11.84418 -11.77542 -11.65624 -11.50667 -11.14990 -11.09679 -10.67008 -10.45039 -10.29021 -10.03640 -9.79020 -9.61928 -9.32155 -8.72131 -7.53927 -7.32483 -7.01404 -4.79151 1.53609 1.75236 2.33668 2.74379 2.80440 3.02563 3.06847 3.21328 3.66375 3.76832 3.86963 4.28311 4.94122 4.98270 5.46063 5.58089 5.75533 5.90809 5.95247 6.13531 6.22267 6.28095 6.44715 6.50094 6.58086 6.65290 6.73280 6.86922 7.04846 7.15492 7.24207 7.41665 7.55152 7.93306 8.19227 8.34373 8.53802 9.65999 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.023313 B = 0.009273 C = 0.007575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.736394 B = 3018.659415 C = 3695.555025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.063 4.063 3 C -0.151 4.151 4 C -0.045 4.045 5 S 0.017 5.983 6 C -0.255 4.255 7 C -0.073 4.073 8 C -0.205 4.205 9 C 0.012 3.988 10 C -0.134 4.134 11 C 0.282 3.718 12 N -0.463 5.463 13 C 0.138 3.862 14 C -0.425 4.425 15 H 0.111 0.889 16 C 0.092 3.908 17 N -0.761 5.761 18 Si 0.871 3.129 19 H -0.245 1.245 20 H -0.275 1.275 21 H -0.240 1.240 22 H 0.058 0.942 23 H 0.047 0.953 24 H 0.044 0.956 25 H 0.050 0.950 26 H 0.078 0.922 27 H 0.149 0.851 28 H 0.125 0.875 29 H 0.112 0.888 30 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.418 -0.883 -9.707 9.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.100 4.100 3 C -0.160 4.160 4 C -0.160 4.160 5 S 0.278 5.722 6 C -0.388 4.388 7 C -0.103 4.103 8 C -0.210 4.210 9 C -0.011 4.011 10 C -0.139 4.139 11 C -0.030 4.030 12 N -0.141 5.141 13 C 0.130 3.870 14 C -0.453 4.453 15 H 0.128 0.872 16 C -0.133 4.133 17 N -0.382 5.382 18 Si 0.693 3.307 19 H -0.169 1.169 20 H -0.201 1.201 21 H -0.162 1.162 22 H 0.077 0.923 23 H 0.066 0.934 24 H 0.064 0.936 25 H 0.069 0.931 26 H 0.097 0.903 27 H 0.166 0.834 28 H 0.143 0.857 29 H 0.130 0.870 30 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 0.272 -1.328 -8.652 8.758 hybrid contribution 1.160 1.289 0.228 1.749 sum 1.432 -0.039 -8.424 8.545 Atomic orbital electron populations 1.21710 0.96165 1.00289 1.01838 1.20197 0.95063 0.93111 1.01643 1.19071 1.11898 0.95750 0.89287 1.22308 1.01998 0.96288 0.95449 1.83818 1.73253 1.16799 0.98358 1.24612 1.14420 0.97834 1.01930 1.19798 0.99761 0.99490 0.91240 1.17584 1.15661 0.95050 0.92715 1.20582 0.93612 0.97181 0.89699 1.17039 1.16713 0.94100 0.86056 1.25354 0.92449 0.92368 0.92840 1.81057 1.11788 1.11012 1.10222 1.18069 0.88386 0.88161 0.92419 1.19395 1.06134 1.26266 0.93465 0.87164 1.26207 1.02252 0.91039 0.93848 1.69676 1.38074 1.29857 1.00568 0.86930 0.81019 0.81423 0.81316 1.16933 1.20069 1.16249 0.92329 0.93399 0.93648 0.93126 0.90340 0.83350 0.85738 0.87045 0.89648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.35 9.89 37.16 0.37 -1.98 16 2 C -0.06 -1.14 5.41 -27.89 -0.15 -1.29 16 3 C -0.15 -3.13 5.22 -103.60 -0.54 -3.67 16 4 C -0.04 -0.89 6.29 -38.47 -0.24 -1.13 16 5 S 0.02 0.29 22.49 -107.50 -2.42 -2.13 16 6 C -0.26 -3.94 11.08 28.81 0.32 -3.62 16 7 C -0.07 -1.20 10.11 -40.57 -0.41 -1.61 16 8 C -0.20 -3.92 5.86 -106.88 -0.63 -4.54 16 9 C 0.01 0.24 9.73 -38.43 -0.37 -0.13 16 10 C -0.13 -2.92 4.84 -104.54 -0.51 -3.43 16 11 C 0.28 6.51 10.43 -22.47 -0.23 6.28 16 12 N -0.46 -11.18 17.40 41.84 0.73 -10.45 16 13 C 0.14 3.10 4.69 -104.79 -0.49 2.61 16 14 C -0.43 -10.10 7.75 -38.03 -0.29 -10.39 16 15 H 0.11 2.68 7.41 -52.49 -0.39 2.29 16 16 C 0.09 2.23 4.47 -17.30 -0.08 2.15 16 17 N -0.76 -18.91 13.92 55.56 0.77 -18.14 16 18 Si 0.87 19.39 24.85 -169.99 -4.22 15.16 16 19 H -0.25 -5.63 5.39 56.52 0.30 -5.32 16 20 H -0.28 -5.91 7.11 56.52 0.40 -5.50 16 21 H -0.24 -5.30 7.11 56.52 0.40 -4.90 16 22 H 0.06 1.03 7.69 -51.92 -0.40 0.63 16 23 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.05 0.86 7.53 -51.93 -0.39 0.47 16 26 H 0.08 1.48 7.07 -51.93 -0.37 1.11 16 27 H 0.15 1.86 8.06 -52.48 -0.42 1.44 16 28 H 0.12 1.69 8.06 -52.48 -0.42 1.27 16 29 H 0.11 1.85 8.06 -52.49 -0.42 1.43 16 30 H 0.29 6.76 8.29 -40.82 -0.34 6.42 16 LS Contribution 272.49 15.07 4.11 4.11 Total: -1.00 -25.14 272.49 -7.19 -32.32 By element: Atomic # 1 Polarization: 2.79 SS G_CDS: -2.89 Total: -0.11 kcal Atomic # 6 Polarization: -17.51 SS G_CDS: -3.26 Total: -20.77 kcal Atomic # 7 Polarization: -30.09 SS G_CDS: 1.50 Total: -28.59 kcal Atomic # 14 Polarization: 19.39 SS G_CDS: -4.22 Total: 15.16 kcal Atomic # 16 Polarization: 0.29 SS G_CDS: -2.42 Total: -2.13 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -25.14 -7.19 -32.32 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396216476.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.565 kcal (2) G-P(sol) polarization free energy of solvation -25.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.323 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds