Wall clock time and date at job start Mon Mar 30 2020 06:46:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50692 * 109.47129 * 2 1 4 4 C 1.38943 * 119.78013 * 270.25359 * 3 2 1 5 5 S 1.76228 * 129.76194 * 359.94906 * 4 3 2 6 6 C 1.75426 * 91.59858 * 180.28399 * 5 4 3 7 7 C 1.32392 * 110.90502 * 0.02562 * 6 5 4 8 8 C 1.40506 * 120.93912 * 180.26355 * 4 3 2 9 9 C 1.41456 * 119.73137 * 359.74377 * 8 4 3 10 10 C 1.38032 * 120.74117 * 0.02562 * 9 8 4 11 11 C 1.43209 * 120.35886 * 180.02562 * 10 9 8 12 12 N 6.04472 * 106.16242 * 35.71324 * 2 1 3 13 13 C 1.40263 * 119.77540 * 90.00517 * 3 2 1 14 14 C 1.40474 * 120.56473 * 0.02562 * 13 3 2 15 15 H 1.07998 * 120.00694 * 315.29269 * 14 13 3 16 16 C 1.40138 * 119.99842 * 135.29824 * 14 13 3 17 17 N 1.30743 * 119.99997 * 154.07279 * 16 14 13 18 18 Si 1.86803 * 119.99674 * 334.06961 * 16 14 13 19 19 H 1.48508 * 109.46973 * 94.68274 * 18 16 14 20 20 H 1.48499 * 109.47370 * 214.67863 * 18 16 14 21 21 H 1.48492 * 109.47155 * 334.68428 * 18 16 14 22 22 H 1.09007 * 109.47141 * 299.99692 * 1 2 3 23 23 H 1.08999 * 109.47380 * 59.99628 * 1 2 3 24 24 H 1.09003 * 109.47158 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47128 * 240.00024 * 2 1 3 26 26 H 1.09006 * 109.47078 * 120.00127 * 2 1 3 27 27 H 1.08004 * 124.54553 * 179.97438 * 6 5 4 28 28 H 1.08004 * 122.05022 * 180.02562 * 7 6 5 29 29 H 1.08001 * 119.62947 * 179.97438 * 9 8 4 30 30 H 0.97005 * 119.99646 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 6 2.2573 2.0731 -1.2059 5 16 2.0462 1.4944 -2.8570 6 6 2.5927 3.0257 -3.5158 7 6 2.8993 3.8743 -2.5470 8 6 2.7307 3.3958 -1.2344 9 6 2.9780 4.0786 -0.0205 10 6 2.7600 3.4601 1.1941 11 6 3.0126 4.1593 2.4181 12 7 3.2126 4.7140 3.3890 13 6 2.2646 2.0774 1.2175 14 6 2.0335 1.4218 2.4381 15 1 1.1318 0.8442 2.5788 16 6 2.9729 1.5173 3.4736 17 7 2.5926 1.3756 4.7164 18 14 4.7686 1.8472 3.0780 19 1 5.0359 3.3051 3.1698 20 1 5.6300 1.1240 4.0476 21 1 5.0672 1.3749 1.7022 22 1 -0.3634 0.5138 0.8901 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0277 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 2.6696 3.2463 -4.5703 28 1 3.2560 4.8730 -2.7514 29 1 3.3422 5.0951 -0.0443 30 1 3.2430 1.4413 5.4331 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396216476.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:38 Heat of formation + Delta-G solvation = 44.204585 kcal Electronic energy + Delta-G solvation = -16283.339963 eV Core-core repulsion = 13747.863402 eV Total energy + Delta-G solvation = -2535.476561 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.057 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.36890 -37.75603 -36.73643 -35.18496 -34.13965 -31.17485 -30.39025 -27.21880 -25.17450 -23.95509 -22.87698 -21.06385 -19.74520 -18.41864 -17.85366 -17.37560 -16.66560 -15.37584 -15.26885 -15.11604 -14.96336 -14.59072 -14.36750 -14.30950 -14.08108 -13.51454 -13.32444 -13.20507 -13.07523 -12.79459 -12.52489 -12.31413 -12.12804 -11.74970 -11.49866 -11.32776 -11.15835 -11.07135 -10.20921 -9.12696 -9.06169 -8.45979 -6.53061 0.01342 0.13692 0.90176 1.11321 1.21840 1.32770 1.37635 1.61279 1.87136 1.99331 2.20515 2.53989 3.25824 3.29990 3.99160 4.27224 4.36942 4.48815 4.61058 4.66456 4.73392 4.88343 4.96535 5.06261 5.11819 5.20824 5.28468 5.41057 5.56071 5.62113 5.79018 5.84455 5.93302 6.18017 6.52162 6.61284 6.76307 7.96431 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.023313 B = 0.009273 C = 0.007575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.736394 B = 3018.659415 C = 3695.555025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.063 4.063 3 C -0.155 4.155 4 C -0.075 4.075 5 S 0.050 5.950 6 C -0.228 4.228 7 C -0.093 4.093 8 C -0.191 4.191 9 C 0.011 3.989 10 C -0.150 4.150 11 C 0.289 3.711 12 N -0.491 5.491 13 C 0.128 3.872 14 C -0.459 4.459 15 H 0.089 0.911 16 C 0.072 3.928 17 N -0.809 5.809 18 Si 0.900 3.100 19 H -0.256 1.256 20 H -0.268 1.268 21 H -0.239 1.239 22 H 0.038 0.962 23 H 0.053 0.947 24 H 0.068 0.932 25 H 0.066 0.934 26 H 0.064 0.936 27 H 0.189 0.811 28 H 0.159 0.841 29 H 0.142 0.858 30 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.789 -0.233 -14.028 14.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.100 4.100 3 C -0.163 4.163 4 C -0.191 4.191 5 S 0.311 5.689 6 C -0.360 4.360 7 C -0.122 4.122 8 C -0.197 4.197 9 C -0.012 4.012 10 C -0.156 4.156 11 C -0.022 4.022 12 N -0.169 5.169 13 C 0.120 3.880 14 C -0.488 4.488 15 H 0.107 0.893 16 C -0.148 4.148 17 N -0.432 5.432 18 Si 0.721 3.279 19 H -0.181 1.181 20 H -0.193 1.193 21 H -0.162 1.162 22 H 0.057 0.943 23 H 0.072 0.928 24 H 0.087 0.913 25 H 0.084 0.916 26 H 0.083 0.917 27 H 0.206 0.794 28 H 0.177 0.823 29 H 0.159 0.841 30 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 0.643 -0.696 -12.986 13.021 hybrid contribution 0.987 1.150 1.018 1.826 sum 1.630 0.455 -11.969 12.088 Atomic orbital electron populations 1.21633 0.94863 1.01671 1.01085 1.20228 0.96169 0.91944 1.01687 1.19346 1.10933 0.96747 0.89295 1.22698 1.02098 0.97148 0.97110 1.83832 1.72231 1.17335 0.95531 1.25226 1.10655 0.96319 1.03843 1.20047 1.01005 1.01556 0.89613 1.18100 1.12949 0.94620 0.94050 1.20879 0.93009 0.98470 0.88839 1.17264 1.17636 0.94164 0.86539 1.25650 0.91763 0.91843 0.92910 1.81039 1.12940 1.12171 1.10754 1.18202 0.88736 0.88379 0.92709 1.19201 1.06421 1.28412 0.94718 0.89333 1.26521 1.03689 0.90874 0.93731 1.69718 1.38469 1.33969 1.01049 0.86501 0.79623 0.80529 0.81209 1.18077 1.19283 1.16176 0.94283 0.92794 0.91271 0.91553 0.91691 0.79380 0.82308 0.84070 0.89682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.34 9.89 71.98 0.71 -3.63 16 2 C -0.06 -2.25 5.41 29.85 0.16 -2.09 16 3 C -0.16 -6.28 5.22 -19.21 -0.10 -6.38 16 4 C -0.07 -2.73 6.29 22.99 0.14 -2.59 16 5 S 0.05 1.43 22.49 -56.49 -1.27 0.15 16 6 C -0.23 -5.56 11.08 66.72 0.74 -4.82 16 7 C -0.09 -2.51 10.11 21.77 0.22 -2.29 16 8 C -0.19 -6.59 5.86 -21.33 -0.13 -6.72 16 9 C 0.01 0.39 9.73 23.01 0.22 0.61 16 10 C -0.15 -6.53 4.84 -19.81 -0.10 -6.62 16 11 C 0.29 13.56 10.43 88.33 0.92 14.48 16 12 N -0.49 -24.20 17.40 19.01 0.33 -23.87 16 13 C 0.13 5.81 4.69 -19.97 -0.09 5.72 16 14 C -0.46 -22.91 7.75 23.28 0.18 -22.73 16 15 H 0.09 4.64 7.41 -2.91 -0.02 4.62 16 16 C 0.07 3.67 4.47 85.32 0.38 4.05 16 17 N -0.81 -42.69 13.92 21.86 0.30 -42.38 16 18 Si 0.90 40.82 24.85 68.60 1.70 42.52 16 19 H -0.26 -11.95 5.39 99.48 0.54 -11.42 16 20 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 21 H -0.24 -10.57 7.11 99.48 0.71 -9.86 16 22 H 0.04 1.39 7.69 -2.38 -0.02 1.37 16 23 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 24 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 25 H 0.07 2.12 7.53 -2.39 -0.02 2.11 16 26 H 0.06 2.51 7.07 -2.38 -0.02 2.49 16 27 H 0.19 3.21 8.06 -2.91 -0.02 3.19 16 28 H 0.16 3.25 8.06 -2.91 -0.02 3.23 16 29 H 0.14 4.23 8.06 -2.91 -0.02 4.20 16 30 H 0.29 14.42 8.29 -92.70 -0.77 13.65 16 Total: -1.00 -55.75 272.49 5.34 -50.42 By element: Atomic # 1 Polarization: 5.17 SS G_CDS: 1.00 Total: 6.16 kcal Atomic # 6 Polarization: -36.27 SS G_CDS: 3.27 Total: -33.00 kcal Atomic # 7 Polarization: -66.89 SS G_CDS: 0.64 Total: -66.25 kcal Atomic # 14 Polarization: 40.82 SS G_CDS: 1.70 Total: 42.52 kcal Atomic # 16 Polarization: 1.43 SS G_CDS: -1.27 Total: 0.15 kcal Total: -55.75 5.34 -50.42 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396216476.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.620 kcal (2) G-P(sol) polarization free energy of solvation -55.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.416 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds