Wall clock time and date at job start Mon Mar 30 2020 06:46:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50692 * 109.47088 * 2 1 4 4 C 1.37766 * 119.32699 * 265.00324 * 3 2 1 5 5 C 1.38315 * 121.09428 * 180.02562 * 4 3 2 6 6 C 1.38850 * 120.27493 * 0.25008 * 5 4 3 7 7 C 1.43199 * 120.32303 * 179.72677 * 6 5 4 8 8 N 6.86917 * 109.71916 * 358.74441 * 2 1 3 9 9 C 1.47570 * 119.34851 * 359.51034 * 6 5 4 10 10 C 1.39090 * 128.85543 * 180.19799 * 9 6 5 11 11 C 1.37273 * 115.06206 * 180.26789 * 10 9 6 12 12 C 1.39740 * 124.87218 * 180.02562 * 11 10 9 13 13 H 1.08003 * 120.00521 * 353.27445 * 12 11 10 14 14 C 1.40335 * 120.00207 * 173.26918 * 12 11 10 15 15 N 1.30662 * 119.99812 * 6.60015 * 14 12 11 16 16 Si 1.86795 * 120.00073 * 186.60072 * 14 12 11 17 17 H 1.48508 * 109.47229 * 94.98903 * 16 14 12 18 18 H 1.48506 * 109.47248 * 214.98415 * 16 14 12 19 19 H 1.48493 * 109.47376 * 334.98775 * 16 14 12 20 20 S 1.75476 * 110.25659 * 0.02562 * 11 10 9 21 21 C 1.39456 * 119.33040 * 85.02037 * 3 2 1 22 22 H 1.08993 * 109.47501 * 60.00154 * 1 2 3 23 23 H 1.09003 * 109.46989 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47062 * 300.00012 * 1 2 3 25 25 H 1.09001 * 109.47062 * 239.99988 * 2 1 3 26 26 H 1.09001 * 109.47077 * 120.00344 * 2 1 3 27 27 H 1.07997 * 119.45663 * 359.97438 * 4 3 2 28 28 H 1.07996 * 119.85931 * 179.97438 * 5 4 3 29 29 H 1.08000 * 122.47045 * 0.29665 * 10 9 6 30 30 H 0.97002 * 120.00544 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 6 2.3559 2.0220 -1.1965 5 6 2.8207 3.3241 -1.2390 6 6 2.9750 4.0508 -0.0660 7 6 3.4617 5.3969 -0.1083 8 7 3.8478 6.4648 -0.1417 9 6 2.6280 3.4241 1.2241 10 6 2.7007 3.9638 2.5040 11 6 2.3087 3.1206 3.5138 12 6 2.2992 3.4505 4.8717 13 1 2.7174 4.3898 5.2022 14 6 1.7463 2.5612 5.8060 15 7 1.3581 1.3728 5.4263 16 14 1.5654 3.0766 7.5923 17 1 0.1971 3.6077 7.8182 18 1 1.7917 1.9016 8.4719 19 1 2.5634 4.1301 7.9071 20 16 1.8212 1.5691 2.8548 21 6 2.1605 2.1000 1.2112 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5139 0.8900 27 1 2.2456 1.4674 -2.1166 28 1 3.0688 3.7757 -2.1881 29 1 3.0400 4.9722 2.6896 30 1 0.9756 0.7582 6.0720 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396216817.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:04 Heat of formation + Delta-G solvation = 28.240414 kcal Electronic energy + Delta-G solvation = -15669.403364 eV Core-core repulsion = 13133.234545 eV Total energy + Delta-G solvation = -2536.168820 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.057 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -38.47787 -35.70741 -35.42296 -33.85265 -32.71040 -29.26327 -28.86695 -25.80018 -23.77961 -22.39841 -20.95346 -19.16050 -18.76500 -17.26588 -15.73217 -15.09734 -14.77407 -14.26967 -13.76706 -13.43452 -13.33140 -13.04462 -12.82792 -12.38562 -12.05519 -12.00246 -11.87052 -11.71764 -11.48343 -11.39225 -11.20962 -10.68701 -10.58471 -10.40972 -10.22784 -10.06676 -9.54834 -9.21934 -8.33651 -7.55930 -7.42944 -6.54901 -4.89482 1.46899 2.14867 2.69313 2.73720 2.80515 3.07996 3.39535 3.41508 3.48179 3.69824 3.78010 4.47816 4.93125 4.93607 5.33437 5.47103 5.66916 5.79512 5.93732 6.02742 6.21847 6.25268 6.42120 6.50218 6.60113 6.67656 6.83510 7.02353 7.14515 7.26158 7.39201 7.50266 7.66835 7.82137 8.05595 8.17173 8.36887 9.38815 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.019842 B = 0.007806 C = 0.005717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.819232 B = 3586.243750 C = 4896.449674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.089 4.089 3 C 0.021 3.979 4 C -0.216 4.216 5 C -0.032 4.032 6 C -0.115 4.115 7 C 0.286 3.714 8 N -0.482 5.482 9 C 0.070 3.930 10 C -0.361 4.361 11 C 0.057 3.943 12 C -0.361 4.361 13 H 0.104 0.896 14 C 0.051 3.949 15 N -0.759 5.759 16 Si 0.941 3.059 17 H -0.261 1.261 18 H -0.268 1.268 19 H -0.254 1.254 20 S 0.149 5.851 21 C -0.272 4.272 22 H 0.053 0.947 23 H 0.051 0.949 24 H 0.061 0.939 25 H 0.066 0.934 26 H 0.070 0.930 27 H 0.111 0.889 28 H 0.111 0.889 29 H 0.107 0.893 30 H 0.306 0.694 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.658 -6.004 -1.683 6.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.127 4.127 3 C 0.016 3.984 4 C -0.236 4.236 5 C -0.055 4.055 6 C -0.121 4.121 7 C -0.025 4.025 8 N -0.159 5.159 9 C 0.060 3.940 10 C -0.386 4.386 11 C -0.064 4.064 12 C -0.395 4.395 13 H 0.122 0.878 14 C -0.173 4.173 15 N -0.384 5.384 16 Si 0.763 3.237 17 H -0.186 1.186 18 H -0.193 1.193 19 H -0.177 1.177 20 S 0.409 5.591 21 C -0.386 4.386 22 H 0.072 0.928 23 H 0.070 0.930 24 H 0.080 0.920 25 H 0.084 0.916 26 H 0.089 0.911 27 H 0.129 0.871 28 H 0.129 0.871 29 H 0.125 0.875 30 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -2.673 -5.869 -1.017 6.528 hybrid contribution 0.314 1.190 0.098 1.234 sum -2.358 -4.679 -0.919 5.320 Atomic orbital electron populations 1.21690 0.94901 1.01024 1.02486 1.20614 0.96229 0.93663 1.02188 1.19088 0.93982 0.94153 0.91170 1.20057 1.11561 0.95698 0.96308 1.20507 0.95959 0.93869 0.95166 1.16663 1.14727 0.87231 0.93512 1.25836 0.91953 0.92673 0.92046 1.81075 1.13158 1.12459 1.09238 1.18620 0.92787 0.91496 0.91140 1.19535 1.27207 1.01786 0.90025 1.21567 0.93759 0.94687 0.96350 1.19535 1.26951 1.03343 0.89670 0.87836 1.26446 0.92971 0.93831 1.04014 1.68639 1.25727 1.05517 1.38488 0.85693 0.80422 0.79832 0.77782 1.18553 1.19272 1.17721 1.84770 1.70336 1.14005 0.89982 1.23361 1.15396 0.98895 1.00932 0.92833 0.92982 0.91966 0.91566 0.91109 0.87095 0.87105 0.87491 0.88092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.03 9.89 37.16 0.37 -1.67 16 2 C -0.09 -1.38 5.84 -27.89 -0.16 -1.54 16 3 C 0.02 0.40 5.15 -104.35 -0.54 -0.14 16 4 C -0.22 -3.73 9.56 -39.73 -0.38 -4.11 16 5 C -0.03 -0.58 9.72 -39.33 -0.38 -0.96 16 6 C -0.12 -2.44 5.95 -103.94 -0.62 -3.06 16 7 C 0.29 6.20 15.07 -22.47 -0.34 5.86 16 8 N -0.48 -10.78 18.54 41.84 0.78 -10.01 16 9 C 0.07 1.62 6.00 -104.95 -0.63 0.99 16 10 C -0.36 -8.90 9.78 -39.62 -0.39 -9.29 16 11 C 0.06 1.38 6.11 -39.37 -0.24 1.14 16 12 C -0.36 -8.37 9.26 -38.23 -0.35 -8.73 16 13 H 0.10 2.29 7.86 -52.48 -0.41 1.88 16 14 C 0.05 1.08 5.49 -17.26 -0.09 0.99 16 15 N -0.76 -16.15 10.63 55.57 0.59 -15.55 16 16 Si 0.94 15.68 29.57 -169.99 -5.03 10.65 16 17 H -0.26 -4.33 7.11 56.52 0.40 -3.93 16 18 H -0.27 -4.32 7.11 56.52 0.40 -3.92 16 19 H -0.25 -4.24 7.11 56.52 0.40 -3.84 16 20 S 0.15 3.32 19.50 -107.50 -2.10 1.23 16 21 C -0.27 -5.94 6.29 -38.30 -0.24 -6.18 16 22 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 23 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 25 H 0.07 0.87 8.01 -51.93 -0.42 0.46 16 26 H 0.07 1.13 7.71 -51.93 -0.40 0.73 16 27 H 0.11 1.59 8.03 -52.49 -0.42 1.17 16 28 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 29 H 0.11 2.66 8.02 -52.49 -0.42 2.24 16 30 H 0.31 5.73 8.29 -40.82 -0.34 5.39 16 LS Contribution 284.09 15.07 4.28 4.28 Total: -1.00 -25.23 284.09 -8.37 -33.60 By element: Atomic # 1 Polarization: 5.40 SS G_CDS: -2.90 Total: 2.50 kcal Atomic # 6 Polarization: -22.70 SS G_CDS: -4.00 Total: -26.70 kcal Atomic # 7 Polarization: -26.93 SS G_CDS: 1.37 Total: -25.56 kcal Atomic # 14 Polarization: 15.68 SS G_CDS: -5.03 Total: 10.65 kcal Atomic # 16 Polarization: 3.32 SS G_CDS: -2.10 Total: 1.23 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -25.23 -8.37 -33.60 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396216817.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.838 kcal (2) G-P(sol) polarization free energy of solvation -25.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.598 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds