Wall clock time and date at job start Mon Mar 30 2020 06:46:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50692 * 109.47088 * 2 1 4 4 C 1.37766 * 119.32699 * 265.00324 * 3 2 1 5 5 C 1.38315 * 121.09428 * 180.02562 * 4 3 2 6 6 C 1.38850 * 120.27493 * 0.25008 * 5 4 3 7 7 C 1.43199 * 120.32303 * 179.72677 * 6 5 4 8 8 N 6.86917 * 109.71916 * 358.74441 * 2 1 3 9 9 C 1.47570 * 119.34851 * 359.51034 * 6 5 4 10 10 C 1.39090 * 128.85543 * 180.19799 * 9 6 5 11 11 C 1.37273 * 115.06206 * 180.26789 * 10 9 6 12 12 C 1.39740 * 124.87218 * 180.02562 * 11 10 9 13 13 H 1.08003 * 120.00521 * 353.27445 * 12 11 10 14 14 C 1.40335 * 120.00207 * 173.26918 * 12 11 10 15 15 N 1.30662 * 119.99812 * 6.60015 * 14 12 11 16 16 Si 1.86795 * 120.00073 * 186.60072 * 14 12 11 17 17 H 1.48508 * 109.47229 * 94.98903 * 16 14 12 18 18 H 1.48506 * 109.47248 * 214.98415 * 16 14 12 19 19 H 1.48493 * 109.47376 * 334.98775 * 16 14 12 20 20 S 1.75476 * 110.25659 * 0.02562 * 11 10 9 21 21 C 1.39456 * 119.33040 * 85.02037 * 3 2 1 22 22 H 1.08993 * 109.47501 * 60.00154 * 1 2 3 23 23 H 1.09003 * 109.46989 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47062 * 300.00012 * 1 2 3 25 25 H 1.09001 * 109.47062 * 239.99988 * 2 1 3 26 26 H 1.09001 * 109.47077 * 120.00344 * 2 1 3 27 27 H 1.07997 * 119.45663 * 359.97438 * 4 3 2 28 28 H 1.07996 * 119.85931 * 179.97438 * 5 4 3 29 29 H 1.08000 * 122.47045 * 0.29665 * 10 9 6 30 30 H 0.97002 * 120.00544 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 6 2.3559 2.0220 -1.1965 5 6 2.8207 3.3241 -1.2390 6 6 2.9750 4.0508 -0.0660 7 6 3.4617 5.3969 -0.1083 8 7 3.8478 6.4648 -0.1417 9 6 2.6280 3.4241 1.2241 10 6 2.7007 3.9638 2.5040 11 6 2.3087 3.1206 3.5138 12 6 2.2992 3.4505 4.8717 13 1 2.7174 4.3898 5.2022 14 6 1.7463 2.5612 5.8060 15 7 1.3581 1.3728 5.4263 16 14 1.5654 3.0766 7.5923 17 1 0.1971 3.6077 7.8182 18 1 1.7917 1.9016 8.4719 19 1 2.5634 4.1301 7.9071 20 16 1.8212 1.5691 2.8548 21 6 2.1605 2.1000 1.2112 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5139 0.8900 27 1 2.2456 1.4674 -2.1166 28 1 3.0688 3.7757 -2.1881 29 1 3.0400 4.9722 2.6896 30 1 0.9756 0.7582 6.0720 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396216817.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:04 Heat of formation + Delta-G solvation = 17.796702 kcal Electronic energy + Delta-G solvation = -15669.856238 eV Core-core repulsion = 13133.234545 eV Total energy + Delta-G solvation = -2536.621693 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.057 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.05584 -37.39610 -37.07315 -35.40554 -34.17855 -30.91986 -30.29869 -27.45251 -25.17849 -24.02588 -22.37417 -20.82067 -20.43067 -18.90426 -17.28417 -16.58407 -16.40020 -15.76616 -15.27841 -14.97492 -14.76562 -14.52501 -14.32070 -14.00300 -13.66411 -13.58753 -13.33008 -13.29650 -13.05695 -12.83419 -12.62398 -12.05235 -11.92583 -11.85272 -11.67897 -11.60974 -11.10788 -10.93295 -9.95738 -9.23094 -9.02526 -8.23883 -6.64656 -0.14086 0.56808 1.28860 1.33641 1.39077 1.52021 1.71723 1.82448 1.92338 2.10691 2.11215 2.80574 3.26005 3.28757 4.03185 4.15454 4.28231 4.59057 4.63194 4.75346 4.79754 4.81891 5.07722 5.14861 5.20495 5.27282 5.38291 5.45284 5.50178 5.64326 5.79060 5.87087 5.98660 6.21244 6.34970 6.45613 6.65945 7.83482 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.019842 B = 0.007806 C = 0.005717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.819232 B = 3586.243750 C = 4896.449674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.089 4.089 3 C 0.020 3.980 4 C -0.199 4.199 5 C -0.019 4.019 6 C -0.136 4.136 7 C 0.294 3.706 8 N -0.503 5.503 9 C 0.046 3.954 10 C -0.398 4.398 11 C 0.026 3.974 12 C -0.394 4.394 13 H 0.099 0.901 14 C 0.021 3.979 15 N -0.777 5.777 16 Si 1.010 2.990 17 H -0.256 1.256 18 H -0.252 1.252 19 H -0.258 1.258 20 S 0.152 5.848 21 C -0.291 4.291 22 H 0.064 0.936 23 H 0.077 0.923 24 H 0.035 0.965 25 H 0.100 0.900 26 H 0.061 0.939 27 H 0.158 0.842 28 H 0.148 0.852 29 H 0.084 0.916 30 H 0.318 0.682 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.359 -7.939 -3.107 9.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.126 4.126 3 C 0.015 3.985 4 C -0.219 4.219 5 C -0.042 4.042 6 C -0.143 4.143 7 C -0.017 4.017 8 N -0.182 5.182 9 C 0.036 3.964 10 C -0.422 4.422 11 C -0.094 4.094 12 C -0.427 4.427 13 H 0.117 0.883 14 C -0.201 4.201 15 N -0.402 5.402 16 Si 0.828 3.172 17 H -0.181 1.181 18 H -0.176 1.176 19 H -0.181 1.181 20 S 0.412 5.588 21 C -0.405 4.405 22 H 0.083 0.917 23 H 0.096 0.904 24 H 0.054 0.946 25 H 0.119 0.881 26 H 0.079 0.921 27 H 0.175 0.825 28 H 0.165 0.835 29 H 0.102 0.898 30 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -3.372 -7.816 -2.469 8.863 hybrid contribution 0.528 1.713 0.353 1.827 sum -2.844 -6.102 -2.116 7.057 Atomic orbital electron populations 1.21673 0.93853 1.02537 1.01734 1.20708 0.97007 0.91471 1.03436 1.19624 0.92681 0.95793 0.90442 1.20624 1.08592 0.95292 0.97387 1.20989 0.93841 0.93984 0.95350 1.16900 1.16087 0.87297 0.93974 1.26029 0.91447 0.92786 0.91452 1.81059 1.14150 1.13022 1.09928 1.18828 0.93618 0.92576 0.91376 1.19530 1.29909 1.01245 0.91517 1.21883 0.94550 0.95883 0.97058 1.19799 1.28535 1.04179 0.90168 0.88338 1.27282 0.91849 0.93411 1.07555 1.68635 1.25213 1.06138 1.40221 0.84714 0.80215 0.79738 0.72559 1.18059 1.17563 1.18104 1.84402 1.70620 1.12972 0.90773 1.23578 1.16387 0.98731 1.01790 0.91742 0.90397 0.94558 0.88109 0.92072 0.82462 0.83456 0.89804 0.86747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.55 9.89 71.98 0.71 -2.84 16 2 C -0.09 -2.44 5.84 29.85 0.17 -2.27 16 3 C 0.02 0.68 5.15 -19.69 -0.10 0.58 16 4 C -0.20 -6.00 9.56 22.18 0.21 -5.79 16 5 C -0.02 -0.63 9.72 22.43 0.22 -0.41 16 6 C -0.14 -5.74 5.95 -19.42 -0.12 -5.85 16 7 C 0.29 12.86 15.07 88.33 1.33 14.19 16 8 N -0.50 -22.88 18.54 19.00 0.35 -22.52 16 9 C 0.05 2.21 6.00 -20.08 -0.12 2.08 16 10 C -0.40 -20.97 9.78 22.25 0.22 -20.75 16 11 C 0.03 1.36 6.11 22.41 0.14 1.49 16 12 C -0.39 -19.26 9.26 23.14 0.21 -19.05 16 13 H 0.10 4.69 7.86 -2.91 -0.02 4.67 16 14 C 0.02 0.90 5.49 85.38 0.47 1.36 16 15 N -0.78 -33.40 10.63 21.90 0.23 -33.17 16 16 Si 1.01 31.97 29.57 68.60 2.03 33.99 16 17 H -0.26 -7.89 7.11 99.48 0.71 -7.18 16 18 H -0.25 -7.29 7.11 99.48 0.71 -6.58 16 19 H -0.26 -8.22 7.11 99.48 0.71 -7.51 16 20 S 0.15 7.01 19.50 -56.49 -1.10 5.91 16 21 C -0.29 -12.76 6.29 23.10 0.15 -12.61 16 22 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 23 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 24 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 25 H 0.10 2.11 8.01 -2.39 -0.02 2.09 16 26 H 0.06 1.82 7.71 -2.39 -0.02 1.80 16 27 H 0.16 3.39 8.03 -2.91 -0.02 3.37 16 28 H 0.15 3.80 8.06 -2.91 -0.02 3.78 16 29 H 0.08 4.59 8.02 -2.91 -0.02 4.57 16 30 H 0.32 11.81 8.29 -92.71 -0.77 11.04 16 Total: -1.00 -57.69 284.09 6.17 -51.53 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: 1.16 Total: 14.12 kcal Atomic # 6 Polarization: -53.35 SS G_CDS: 3.49 Total: -49.85 kcal Atomic # 7 Polarization: -56.28 SS G_CDS: 0.58 Total: -55.69 kcal Atomic # 14 Polarization: 31.97 SS G_CDS: 2.03 Total: 33.99 kcal Atomic # 16 Polarization: 7.01 SS G_CDS: -1.10 Total: 5.91 kcal Total: -57.69 6.17 -51.53 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396216817.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.323 kcal (2) G-P(sol) polarization free energy of solvation -57.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.526 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds