Wall clock time and date at job start Mon Mar 30 2020 06:44:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50696 * 109.47043 * 2 1 4 4 C 1.36251 * 119.88827 * 265.29795 * 3 2 1 5 5 C 1.39513 * 120.73713 * 180.27559 * 4 3 2 6 6 C 1.43195 * 119.74346 * 179.69969 * 5 4 3 7 7 N 5.92892 * 108.58977 * 322.29108 * 2 1 3 8 8 C 1.42818 * 120.51635 * 359.72027 * 5 4 3 9 9 C 1.45040 * 129.25422 * 180.02562 * 8 5 4 10 10 C 1.32113 * 114.89361 * 179.97438 * 9 8 5 11 11 S 1.75320 * 111.23070 * 359.97438 * 10 9 8 12 12 C 1.39211 * 118.76316 * 359.97438 * 8 5 4 13 13 C 1.40697 * 119.88603 * 84.99738 * 3 2 1 14 14 C 1.40529 * 119.95934 * 0.02562 * 13 3 2 15 15 H 1.07997 * 119.99751 * 322.73196 * 14 13 3 16 16 C 1.40219 * 119.99779 * 142.73257 * 14 13 3 17 17 N 1.30683 * 120.00169 * 332.32753 * 16 14 13 18 18 Si 1.86803 * 119.99720 * 152.32843 * 16 14 13 19 19 H 1.48501 * 109.47069 * 270.00092 * 18 16 14 20 20 H 1.48500 * 109.47095 * 29.99452 * 18 16 14 21 21 H 1.48496 * 109.47399 * 149.99943 * 18 16 14 22 22 H 1.09006 * 109.46981 * 60.00592 * 1 2 3 23 23 H 1.09002 * 109.47273 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47736 * 299.99890 * 1 2 3 25 25 H 1.09001 * 109.47565 * 239.99620 * 2 1 3 26 26 H 1.09006 * 109.46981 * 119.99408 * 2 1 3 27 27 H 1.07995 * 119.63134 * 359.97438 * 4 3 2 28 28 H 1.08006 * 122.55322 * 359.97438 * 9 8 5 29 29 H 1.08004 * 124.38333 * 180.02562 * 10 9 8 30 30 H 0.96989 * 119.99700 * 357.81313 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3499 2.0286 -1.1773 5 6 2.8219 3.3413 -1.1975 6 6 3.1554 3.9573 -2.4464 7 7 3.4201 4.4458 -3.4372 8 6 2.9754 4.0755 0.0179 9 6 3.4435 5.4338 0.2167 10 6 3.4728 5.8333 1.4757 11 16 2.9216 4.5676 2.5563 12 6 2.6450 3.4569 1.2205 13 6 2.1657 2.1172 1.2152 14 6 1.8310 1.4868 2.4258 15 1 0.9867 0.8147 2.4691 16 6 2.5932 1.7304 3.5772 17 7 3.8529 2.0608 3.4691 18 14 1.8078 1.5827 5.2657 19 1 1.2408 2.8960 5.6645 20 1 0.7237 0.5688 5.2203 21 1 2.8344 1.1659 6.2544 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 2.2396 1.4866 -2.1049 28 1 3.7451 6.0703 -0.6021 29 1 3.7939 6.8130 1.7974 30 1 4.2689 2.1065 2.5942 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396216878.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:51 Heat of formation + Delta-G solvation = 37.819134 kcal Electronic energy + Delta-G solvation = -16203.357129 eV Core-core repulsion = 13667.603673 eV Total energy + Delta-G solvation = -2535.753455 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.057 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.77161 -35.86479 -35.25770 -34.11856 -31.92239 -29.92271 -27.76178 -26.02286 -23.32858 -22.23140 -21.41089 -19.59935 -18.26576 -17.64301 -15.62414 -15.01749 -14.68832 -14.19017 -13.98173 -13.51471 -13.26504 -12.86925 -12.71974 -12.42933 -12.26248 -11.99580 -11.74884 -11.69247 -11.46757 -11.19577 -10.96992 -10.62636 -10.40803 -10.21940 -9.96333 -9.77679 -9.74863 -9.08564 -8.51901 -7.76634 -7.52105 -6.68134 -4.87973 1.47587 2.24675 2.56718 2.95773 2.99815 3.07469 3.16498 3.17379 3.60931 3.74541 3.77353 4.41987 4.99765 5.09387 5.36699 5.71652 5.79256 5.94356 5.95776 6.12006 6.27959 6.34398 6.50449 6.60691 6.64755 6.82480 6.85305 7.00825 7.02167 7.29668 7.38320 7.50305 7.64151 7.80198 8.23039 8.32856 8.48677 9.60189 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.018658 B = 0.010441 C = 0.007120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.339998 B = 2681.057860 C = 3931.884409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.056 4.056 3 C -0.190 4.190 4 C -0.011 4.011 5 C -0.168 4.168 6 C 0.289 3.711 7 N -0.504 5.504 8 C 0.010 3.990 9 C -0.140 4.140 10 C -0.216 4.216 11 S 0.109 5.891 12 C -0.217 4.217 13 C 0.145 3.855 14 C -0.484 4.484 15 H 0.096 0.904 16 C 0.027 3.973 17 N -0.739 5.739 18 Si 1.058 2.942 19 H -0.266 1.266 20 H -0.271 1.271 21 H -0.271 1.271 22 H 0.045 0.955 23 H 0.042 0.958 24 H 0.057 0.943 25 H 0.049 0.951 26 H 0.069 0.931 27 H 0.103 0.897 28 H 0.123 0.877 29 H 0.151 0.849 30 H 0.304 0.696 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.144 -1.154 3.111 4.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.093 4.093 3 C -0.194 4.194 4 C -0.033 4.033 5 C -0.176 4.176 6 C -0.021 4.021 7 N -0.183 5.183 8 C 0.000 4.000 9 C -0.173 4.173 10 C -0.350 4.350 11 S 0.374 5.626 12 C -0.333 4.333 13 C 0.138 3.862 14 C -0.510 4.510 15 H 0.114 0.886 16 C -0.200 4.200 17 N -0.359 5.359 18 Si 0.880 3.120 19 H -0.191 1.191 20 H -0.196 1.196 21 H -0.196 1.196 22 H 0.065 0.935 23 H 0.061 0.939 24 H 0.076 0.924 25 H 0.068 0.932 26 H 0.088 0.912 27 H 0.121 0.879 28 H 0.141 0.859 29 H 0.169 0.831 30 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -2.506 -0.251 4.794 5.415 hybrid contribution -0.096 -0.012 -2.931 2.933 sum -2.602 -0.263 1.863 3.211 Atomic orbital electron populations 1.21752 0.96584 0.99985 1.01773 1.20100 0.94679 0.93401 1.01125 1.19105 1.12291 0.95999 0.92037 1.19978 0.94670 0.91700 0.96953 1.15103 1.22646 0.95648 0.84233 1.25986 0.91363 0.92132 0.92570 1.81071 1.14851 1.10345 1.12024 1.18707 0.97478 0.91872 0.91991 1.20809 1.04676 0.95234 0.96580 1.25340 1.07675 1.03927 0.98102 1.84153 1.68184 1.02111 1.08121 1.22560 1.17712 0.98772 0.94295 1.16904 0.88261 0.87837 0.93220 1.20804 1.13354 1.23389 0.93445 0.88577 1.27202 0.94273 0.92596 1.05963 1.70390 1.10471 1.23107 1.31933 0.83672 0.76456 0.78813 0.73042 1.19128 1.19620 1.19570 0.93544 0.93931 0.92385 0.93242 0.91227 0.87876 0.85945 0.83148 0.88268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.26 9.80 37.16 0.36 -1.90 16 2 C -0.06 -0.97 5.42 -27.89 -0.15 -1.13 16 3 C -0.19 -3.89 5.14 -104.41 -0.54 -4.43 16 4 C -0.01 -0.23 9.22 -39.82 -0.37 -0.60 16 5 C -0.17 -3.59 5.82 -105.73 -0.62 -4.20 16 6 C 0.29 6.17 14.96 -22.48 -0.34 5.83 16 7 N -0.50 -11.07 18.54 41.84 0.78 -10.30 16 8 C 0.01 0.22 5.99 -105.07 -0.63 -0.41 16 9 C -0.14 -2.79 9.96 -38.81 -0.39 -3.18 16 10 C -0.22 -4.00 11.04 28.81 0.32 -3.68 16 11 S 0.11 2.25 19.89 -107.50 -2.14 0.11 16 12 C -0.22 -4.89 5.28 -37.66 -0.20 -5.09 16 13 C 0.14 3.24 5.01 -106.55 -0.53 2.71 16 14 C -0.48 -10.59 7.62 -37.97 -0.29 -10.88 16 15 H 0.10 2.03 6.39 -52.49 -0.34 1.69 16 16 C 0.03 0.57 3.97 -17.30 -0.07 0.51 16 17 N -0.74 -16.83 11.61 55.56 0.65 -16.18 16 18 Si 1.06 18.79 30.02 -169.99 -5.10 13.69 16 19 H -0.27 -4.65 7.11 56.52 0.40 -4.25 16 20 H -0.27 -4.54 7.11 56.52 0.40 -4.14 16 21 H -0.27 -4.80 7.11 56.52 0.40 -4.39 16 22 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 23 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.06 0.97 7.08 -51.93 -0.37 0.60 16 25 H 0.05 0.78 8.03 -51.93 -0.42 0.37 16 26 H 0.07 1.27 7.20 -51.93 -0.37 0.89 16 27 H 0.10 1.85 8.04 -52.49 -0.42 1.42 16 28 H 0.12 2.27 8.04 -52.48 -0.42 1.85 16 29 H 0.15 2.28 8.06 -52.48 -0.42 1.86 16 30 H 0.30 7.27 7.11 -40.82 -0.29 6.98 16 LS Contribution 276.84 15.07 4.17 4.17 Total: -1.00 -23.86 276.84 -7.77 -31.63 By element: Atomic # 1 Polarization: 6.01 SS G_CDS: -2.69 Total: 3.32 kcal Atomic # 6 Polarization: -23.01 SS G_CDS: -3.43 Total: -26.44 kcal Atomic # 7 Polarization: -27.90 SS G_CDS: 1.42 Total: -26.48 kcal Atomic # 14 Polarization: 18.79 SS G_CDS: -5.10 Total: 13.69 kcal Atomic # 16 Polarization: 2.25 SS G_CDS: -2.14 Total: 0.11 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -23.86 -7.77 -31.63 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396216878.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.449 kcal (2) G-P(sol) polarization free energy of solvation -23.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.630 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds