Wall clock time and date at job start Mon Mar 30 2020 06:44:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50696 * 109.47043 * 2 1 4 4 C 1.36251 * 119.88827 * 265.29795 * 3 2 1 5 5 C 1.39513 * 120.73713 * 180.27559 * 4 3 2 6 6 C 1.43195 * 119.74346 * 179.69969 * 5 4 3 7 7 N 5.92892 * 108.58977 * 322.29108 * 2 1 3 8 8 C 1.42818 * 120.51635 * 359.72027 * 5 4 3 9 9 C 1.45040 * 129.25422 * 180.02562 * 8 5 4 10 10 C 1.32113 * 114.89361 * 179.97438 * 9 8 5 11 11 S 1.75320 * 111.23070 * 359.97438 * 10 9 8 12 12 C 1.39211 * 118.76316 * 359.97438 * 8 5 4 13 13 C 1.40697 * 119.88603 * 84.99738 * 3 2 1 14 14 C 1.40529 * 119.95934 * 0.02562 * 13 3 2 15 15 H 1.07997 * 119.99751 * 322.73196 * 14 13 3 16 16 C 1.40219 * 119.99779 * 142.73257 * 14 13 3 17 17 N 1.30683 * 120.00169 * 332.32753 * 16 14 13 18 18 Si 1.86803 * 119.99720 * 152.32843 * 16 14 13 19 19 H 1.48501 * 109.47069 * 270.00092 * 18 16 14 20 20 H 1.48500 * 109.47095 * 29.99452 * 18 16 14 21 21 H 1.48496 * 109.47399 * 149.99943 * 18 16 14 22 22 H 1.09006 * 109.46981 * 60.00592 * 1 2 3 23 23 H 1.09002 * 109.47273 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47736 * 299.99890 * 1 2 3 25 25 H 1.09001 * 109.47565 * 239.99620 * 2 1 3 26 26 H 1.09006 * 109.46981 * 119.99408 * 2 1 3 27 27 H 1.07995 * 119.63134 * 359.97438 * 4 3 2 28 28 H 1.08006 * 122.55322 * 359.97438 * 9 8 5 29 29 H 1.08004 * 124.38333 * 180.02562 * 10 9 8 30 30 H 0.96989 * 119.99700 * 357.81313 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3499 2.0286 -1.1773 5 6 2.8219 3.3413 -1.1975 6 6 3.1554 3.9573 -2.4464 7 7 3.4201 4.4458 -3.4372 8 6 2.9754 4.0755 0.0179 9 6 3.4435 5.4338 0.2167 10 6 3.4728 5.8333 1.4757 11 16 2.9216 4.5676 2.5563 12 6 2.6450 3.4569 1.2205 13 6 2.1657 2.1172 1.2152 14 6 1.8310 1.4868 2.4258 15 1 0.9867 0.8147 2.4691 16 6 2.5932 1.7304 3.5772 17 7 3.8529 2.0608 3.4691 18 14 1.8078 1.5827 5.2657 19 1 1.2408 2.8960 5.6645 20 1 0.7237 0.5688 5.2203 21 1 2.8344 1.1659 6.2544 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 2.2396 1.4866 -2.1049 28 1 3.7451 6.0703 -0.6021 29 1 3.7939 6.8130 1.7974 30 1 4.2689 2.1065 2.5942 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396216878.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:50 Heat of formation + Delta-G solvation = 29.130757 kcal Electronic energy + Delta-G solvation = -16203.733885 eV Core-core repulsion = 13667.603673 eV Total energy + Delta-G solvation = -2536.130212 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.057 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.37783 -37.51961 -36.86647 -35.71642 -33.40072 -31.55236 -29.27271 -27.67773 -24.80708 -23.86801 -22.89829 -21.17889 -19.89642 -19.22423 -17.21314 -16.64567 -16.26162 -15.64576 -15.49121 -14.99524 -14.89129 -14.47366 -14.22576 -13.97840 -13.83643 -13.57032 -13.36971 -13.19808 -12.97461 -12.66329 -12.48258 -12.00434 -11.85820 -11.62657 -11.49810 -11.33155 -11.30628 -10.70047 -10.16273 -9.43568 -9.13381 -8.31123 -6.56188 -0.13953 0.61291 0.99987 1.46146 1.49089 1.55710 1.62543 1.79609 1.90876 2.13531 2.29496 2.77460 3.35503 3.41463 3.88566 4.26802 4.41488 4.41911 4.51793 4.76557 4.83559 4.88739 5.06512 5.16386 5.20283 5.29023 5.36812 5.42073 5.54021 5.67237 5.73985 5.88024 6.01054 6.17423 6.57902 6.68750 6.79795 7.88879 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.018658 B = 0.010441 C = 0.007120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.339998 B = 2681.057860 C = 3931.884409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.054 4.054 3 C -0.195 4.195 4 C -0.015 4.015 5 C -0.178 4.178 6 C 0.299 3.701 7 N -0.516 5.516 8 C -0.006 4.006 9 C -0.157 4.157 10 C -0.196 4.196 11 S 0.093 5.907 12 C -0.243 4.243 13 C 0.125 3.875 14 C -0.498 4.498 15 H 0.100 0.900 16 C 0.004 3.996 17 N -0.756 5.756 18 Si 1.092 2.908 19 H -0.262 1.262 20 H -0.254 1.254 21 H -0.270 1.270 22 H 0.049 0.951 23 H 0.067 0.933 24 H 0.042 0.958 25 H 0.068 0.932 26 H 0.059 0.941 27 H 0.126 0.874 28 H 0.136 0.864 29 H 0.188 0.812 30 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.760 -1.255 3.249 5.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.091 4.091 3 C -0.200 4.200 4 C -0.036 4.036 5 C -0.186 4.186 6 C -0.010 4.010 7 N -0.196 5.196 8 C -0.017 4.017 9 C -0.189 4.189 10 C -0.330 4.330 11 S 0.358 5.642 12 C -0.359 4.359 13 C 0.118 3.882 14 C -0.524 4.524 15 H 0.117 0.883 16 C -0.219 4.219 17 N -0.376 5.376 18 Si 0.910 3.090 19 H -0.186 1.186 20 H -0.177 1.177 21 H -0.195 1.195 22 H 0.068 0.932 23 H 0.086 0.914 24 H 0.061 0.939 25 H 0.087 0.913 26 H 0.077 0.923 27 H 0.144 0.856 28 H 0.153 0.847 29 H 0.206 0.794 30 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -3.126 -0.358 4.910 5.831 hybrid contribution 0.105 0.036 -3.037 3.039 sum -3.021 -0.322 1.873 3.569 Atomic orbital electron populations 1.21684 0.95077 1.01500 1.01182 1.20135 0.95916 0.91564 1.01523 1.19503 1.11527 0.97343 0.91613 1.20229 0.94093 0.91454 0.97847 1.15297 1.22941 0.96259 0.84109 1.25939 0.90973 0.91768 0.92347 1.81075 1.15382 1.10739 1.12362 1.19061 0.97602 0.92962 0.92079 1.20948 1.05594 0.94759 0.97583 1.25682 1.05783 1.04573 0.96973 1.84085 1.68645 1.02784 1.08639 1.22802 1.18657 0.99345 0.95076 1.17270 0.88507 0.88221 0.94209 1.20929 1.13696 1.23928 0.93831 0.88264 1.28193 0.93910 0.91320 1.08430 1.70495 1.11272 1.25148 1.30693 0.83273 0.76333 0.79464 0.69949 1.18626 1.17747 1.19496 0.93186 0.91369 0.93878 0.91334 0.92265 0.85606 0.84673 0.79446 0.90024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.07 9.80 71.98 0.71 -3.36 16 2 C -0.05 -1.82 5.42 29.85 0.16 -1.66 16 3 C -0.20 -7.91 5.14 -19.73 -0.10 -8.01 16 4 C -0.01 -0.58 9.22 22.11 0.20 -0.38 16 5 C -0.18 -7.48 5.82 -20.58 -0.12 -7.60 16 6 C 0.30 12.47 14.96 88.33 1.32 13.79 16 7 N -0.52 -22.11 18.54 19.00 0.35 -21.75 16 8 C -0.01 -0.27 5.99 -20.16 -0.12 -0.40 16 9 C -0.16 -6.07 9.96 23.04 0.23 -5.84 16 10 C -0.20 -6.92 11.04 66.84 0.74 -6.18 16 11 S 0.09 3.82 19.89 -56.49 -1.12 2.69 16 12 C -0.24 -10.96 5.28 23.51 0.12 -10.84 16 13 C 0.12 5.60 5.01 -21.11 -0.11 5.50 16 14 C -0.50 -21.81 7.62 23.31 0.18 -21.63 16 15 H 0.10 4.17 6.39 -2.91 -0.02 4.15 16 16 C 0.00 0.19 3.97 85.35 0.34 0.53 16 17 N -0.76 -34.74 11.61 21.87 0.25 -34.49 16 18 Si 1.09 36.98 30.02 68.60 2.06 39.04 16 19 H -0.26 -8.62 7.11 99.48 0.71 -7.91 16 20 H -0.25 -7.80 7.11 99.48 0.71 -7.10 16 21 H -0.27 -9.07 7.11 99.48 0.71 -8.36 16 22 H 0.05 1.43 8.14 -2.38 -0.02 1.41 16 23 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 24 H 0.04 1.39 7.08 -2.39 -0.02 1.37 16 25 H 0.07 2.02 8.03 -2.39 -0.02 2.00 16 26 H 0.06 2.11 7.20 -2.38 -0.02 2.09 16 27 H 0.13 4.27 8.04 -2.91 -0.02 4.25 16 28 H 0.14 4.82 8.04 -2.91 -0.02 4.79 16 29 H 0.19 5.09 8.06 -2.91 -0.02 5.07 16 30 H 0.29 14.09 7.11 -92.72 -0.66 13.43 16 Total: -1.00 -50.11 276.84 6.38 -43.74 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: 1.28 Total: 16.85 kcal Atomic # 6 Polarization: -49.62 SS G_CDS: 3.55 Total: -46.07 kcal Atomic # 7 Polarization: -56.85 SS G_CDS: 0.61 Total: -56.24 kcal Atomic # 14 Polarization: 36.98 SS G_CDS: 2.06 Total: 39.04 kcal Atomic # 16 Polarization: 3.82 SS G_CDS: -1.12 Total: 2.69 kcal Total: -50.11 6.38 -43.74 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396216878.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.868 kcal (2) G-P(sol) polarization free energy of solvation -50.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.738 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds