Wall clock time and date at job start Mon Mar 30 2020 06:43:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50701 * 109.46459 * 2 1 4 4 C 1.35695 * 119.84499 * 265.01471 * 3 2 1 5 5 C 1.40512 * 121.26151 * 179.97438 * 4 3 2 6 6 S 1.76032 * 130.17998 * 180.02562 * 5 4 3 7 7 C 1.75269 * 92.21227 * 180.02562 * 6 5 4 8 8 C 1.32030 * 111.39376 * 359.97438 * 7 6 5 9 9 C 1.39997 * 120.26857 * 0.02562 * 5 4 3 10 10 C 1.42170 * 118.90892 * 359.73002 * 9 5 4 11 11 C 1.43197 * 120.19472 * 180.27375 * 10 9 5 12 12 N 6.00242 * 102.92456 * 35.75490 * 2 1 3 13 13 C 1.41008 * 119.85039 * 85.00095 * 3 2 1 14 14 C 1.40570 * 120.17753 * 0.02562 * 13 3 2 15 15 H 1.08009 * 119.99644 * 52.01299 * 14 13 3 16 16 C 1.40249 * 120.00358 * 232.01479 * 14 13 3 17 17 N 1.30668 * 119.99910 * 198.14899 * 16 14 13 18 18 Si 1.86793 * 119.99698 * 18.42370 * 16 14 13 19 19 H 1.48501 * 109.47104 * 265.56460 * 18 16 14 20 20 H 1.48497 * 109.47299 * 25.56942 * 18 16 14 21 21 H 1.48503 * 109.46928 * 145.56931 * 18 16 14 22 22 H 1.09004 * 109.46887 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.47461 * 299.99805 * 1 2 3 24 24 H 1.09001 * 109.47171 * 60.00701 * 1 2 3 25 25 H 1.08994 * 109.47342 * 239.99732 * 2 1 3 26 26 H 1.09001 * 109.47171 * 119.99299 * 2 1 3 27 27 H 1.08003 * 119.37528 * 0.02562 * 4 3 2 28 28 H 1.07998 * 124.30508 * 179.97438 * 7 6 5 29 29 H 1.08001 * 122.54362 * 180.02562 * 8 7 6 30 30 H 0.97000 * 119.99830 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.3536 2.0235 -1.1725 5 6 2.8241 3.3471 -1.2072 6 16 3.3031 4.3467 -2.5746 7 6 3.6872 5.7043 -1.5347 8 6 3.4679 5.4157 -0.2652 9 6 2.9715 4.0749 -0.0204 10 6 2.6324 3.4544 1.2130 11 6 2.7670 4.1754 2.4429 12 7 2.8726 4.7477 3.4185 13 6 2.1656 2.1181 1.2183 14 6 1.8320 1.4912 2.4315 15 1 2.2540 0.5273 2.6751 16 6 0.9513 2.1173 3.3255 17 7 0.9088 1.7369 4.5749 18 14 -0.1665 3.4896 2.7284 19 1 0.4810 4.8015 2.9829 20 1 -0.4096 3.3317 1.2720 21 1 -1.4596 3.4265 3.4558 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5137 -0.8900 25 1 1.8934 -0.5138 -0.8899 26 1 1.8933 -0.5137 0.8900 27 1 2.2451 1.4757 -2.0970 28 1 4.0564 6.6559 -1.8876 29 1 3.6445 6.1242 0.5306 30 1 0.3000 2.1702 5.1933 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396217422.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:29 Heat of formation + Delta-G solvation = 56.271121 kcal Electronic energy + Delta-G solvation = -16354.798911 eV Core-core repulsion = 13819.845594 eV Total energy + Delta-G solvation = -2534.953317 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.057 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.01010 -35.68302 -35.45517 -33.47886 -32.00264 -30.67714 -28.23974 -25.81533 -23.41780 -22.48708 -21.57158 -19.59596 -17.82078 -17.48263 -16.07583 -15.35206 -15.17971 -14.12221 -13.71413 -13.46670 -13.39487 -13.10975 -12.81942 -12.51890 -12.35514 -12.07017 -11.84955 -11.59556 -11.53927 -11.02193 -10.84018 -10.69270 -10.45741 -10.28244 -10.12598 -9.99751 -9.80453 -9.23977 -8.63571 -7.67245 -7.11595 -7.03331 -4.75487 1.26841 1.96259 2.15431 2.57109 2.84136 3.07742 3.12234 3.18236 3.86287 3.88707 3.90074 4.41936 5.00045 5.16519 5.18045 5.54012 5.64705 5.76486 5.97672 6.05545 6.07848 6.20012 6.33526 6.42168 6.54656 6.60564 6.79328 6.88588 6.89723 7.01107 7.18833 7.46097 7.55700 8.07714 8.25329 8.51165 8.74358 9.92105 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.020160 B = 0.010462 C = 0.007810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.538402 B = 2675.818414 C = 3584.358145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.065 4.065 3 C -0.103 4.103 4 C -0.052 4.052 5 C -0.206 4.206 6 S 0.037 5.963 7 C -0.195 4.195 8 C -0.124 4.124 9 C -0.001 4.001 10 C -0.133 4.133 11 C 0.288 3.712 12 N -0.477 5.477 13 C 0.136 3.864 14 C -0.453 4.453 15 H 0.108 0.892 16 C 0.097 3.903 17 N -0.788 5.788 18 Si 0.866 3.134 19 H -0.250 1.250 20 H -0.242 1.242 21 H -0.278 1.278 22 H 0.047 0.953 23 H 0.064 0.936 24 H 0.045 0.955 25 H 0.054 0.946 26 H 0.078 0.922 27 H 0.110 0.890 28 H 0.157 0.843 29 H 0.133 0.867 30 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.137 0.507 -10.972 10.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.102 4.102 3 C -0.106 4.106 4 C -0.074 4.074 5 C -0.320 4.320 6 S 0.298 5.702 7 C -0.328 4.328 8 C -0.155 4.155 9 C -0.011 4.011 10 C -0.142 4.142 11 C -0.023 4.023 12 N -0.155 5.155 13 C 0.129 3.871 14 C -0.482 4.482 15 H 0.125 0.875 16 C -0.125 4.125 17 N -0.411 5.411 18 Si 0.689 3.311 19 H -0.174 1.174 20 H -0.165 1.165 21 H -0.203 1.203 22 H 0.066 0.934 23 H 0.083 0.917 24 H 0.064 0.936 25 H 0.073 0.927 26 H 0.097 0.903 27 H 0.128 0.872 28 H 0.175 0.825 29 H 0.150 0.850 30 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 0.293 1.205 -10.748 10.819 hybrid contribution -0.636 0.759 1.103 1.482 sum -0.343 1.964 -9.645 9.849 Atomic orbital electron populations 1.21676 0.95626 1.00547 1.02129 1.20284 0.95675 0.92554 1.01728 1.19765 1.01949 0.97061 0.91840 1.19805 0.98428 0.91666 0.97507 1.21977 1.16299 0.99254 0.94515 1.83518 1.71127 1.05656 1.09917 1.24827 1.08803 1.02517 0.96683 1.20976 1.02159 0.95844 0.96538 1.18839 0.98220 0.91895 0.92127 1.16056 1.16933 0.96561 0.84620 1.25302 0.92337 0.92001 0.92621 1.81020 1.12807 1.11135 1.10539 1.17274 0.88083 0.88589 0.93111 1.19247 1.24068 1.06666 0.98171 0.87482 1.25957 0.97127 0.95892 0.93474 1.69577 1.30797 1.37425 1.03267 0.86950 0.79787 0.82670 0.81719 1.17424 1.16477 1.20345 0.93428 0.91740 0.93587 0.92683 0.90332 0.87200 0.82508 0.84955 0.90124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.26 9.89 37.16 0.37 -1.90 16 2 C -0.06 -1.08 5.57 -27.88 -0.16 -1.23 16 3 C -0.10 -2.02 5.14 -104.48 -0.54 -2.55 16 4 C -0.05 -0.94 9.57 -39.63 -0.38 -1.32 16 5 C -0.21 -3.90 6.50 -38.07 -0.25 -4.15 16 6 S 0.04 0.57 23.24 -107.50 -2.50 -1.92 16 7 C -0.19 -2.98 11.03 28.81 0.32 -2.66 16 8 C -0.12 -2.22 9.96 -38.80 -0.39 -2.61 16 9 C 0.00 -0.03 5.99 -105.03 -0.63 -0.66 16 10 C -0.13 -3.06 4.74 -105.20 -0.50 -3.56 16 11 C 0.29 7.08 10.26 -22.47 -0.23 6.85 16 12 N -0.48 -12.18 17.73 41.84 0.74 -11.44 16 13 C 0.14 3.07 4.42 -106.71 -0.47 2.60 16 14 C -0.45 -11.02 7.73 -37.95 -0.29 -11.31 16 15 H 0.11 2.68 7.39 -52.48 -0.39 2.29 16 16 C 0.10 2.45 4.66 -17.29 -0.08 2.37 16 17 N -0.79 -20.52 13.92 55.56 0.77 -19.75 16 18 Si 0.87 20.27 24.81 -169.99 -4.22 16.05 16 19 H -0.25 -6.14 5.80 56.52 0.33 -5.81 16 20 H -0.24 -5.54 7.11 56.52 0.40 -5.14 16 21 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 22 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 23 H 0.06 1.17 7.94 -51.93 -0.41 0.76 16 24 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.05 0.77 8.02 -51.93 -0.42 0.36 16 26 H 0.08 1.36 6.88 -51.93 -0.36 1.01 16 27 H 0.11 1.68 8.03 -52.48 -0.42 1.26 16 28 H 0.16 1.87 8.06 -52.49 -0.42 1.44 16 29 H 0.13 2.28 8.04 -52.49 -0.42 1.86 16 30 H 0.29 7.02 8.29 -40.82 -0.34 6.68 16 LS Contribution 274.09 15.07 4.13 4.13 Total: -1.00 -26.55 274.09 -7.19 -33.74 By element: Atomic # 1 Polarization: 2.22 SS G_CDS: -2.89 Total: -0.68 kcal Atomic # 6 Polarization: -16.91 SS G_CDS: -3.22 Total: -20.13 kcal Atomic # 7 Polarization: -32.70 SS G_CDS: 1.52 Total: -31.19 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -4.22 Total: 16.05 kcal Atomic # 16 Polarization: 0.57 SS G_CDS: -2.50 Total: -1.92 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -26.55 -7.19 -33.74 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396217422.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.008 kcal (2) G-P(sol) polarization free energy of solvation -26.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.737 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds