Wall clock time and date at job start Mon Mar 30 2020 06:43:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50701 * 109.46459 * 2 1 4 4 C 1.35695 * 119.84499 * 265.01471 * 3 2 1 5 5 C 1.40512 * 121.26151 * 179.97438 * 4 3 2 6 6 S 1.76032 * 130.17998 * 180.02562 * 5 4 3 7 7 C 1.75269 * 92.21227 * 180.02562 * 6 5 4 8 8 C 1.32030 * 111.39376 * 359.97438 * 7 6 5 9 9 C 1.39997 * 120.26857 * 0.02562 * 5 4 3 10 10 C 1.42170 * 118.90892 * 359.73002 * 9 5 4 11 11 C 1.43197 * 120.19472 * 180.27375 * 10 9 5 12 12 N 6.00242 * 102.92456 * 35.75490 * 2 1 3 13 13 C 1.41008 * 119.85039 * 85.00095 * 3 2 1 14 14 C 1.40570 * 120.17753 * 0.02562 * 13 3 2 15 15 H 1.08009 * 119.99644 * 52.01299 * 14 13 3 16 16 C 1.40249 * 120.00358 * 232.01479 * 14 13 3 17 17 N 1.30668 * 119.99910 * 198.14899 * 16 14 13 18 18 Si 1.86793 * 119.99698 * 18.42370 * 16 14 13 19 19 H 1.48501 * 109.47104 * 265.56460 * 18 16 14 20 20 H 1.48497 * 109.47299 * 25.56942 * 18 16 14 21 21 H 1.48503 * 109.46928 * 145.56931 * 18 16 14 22 22 H 1.09004 * 109.46887 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.47461 * 299.99805 * 1 2 3 24 24 H 1.09001 * 109.47171 * 60.00701 * 1 2 3 25 25 H 1.08994 * 109.47342 * 239.99732 * 2 1 3 26 26 H 1.09001 * 109.47171 * 119.99299 * 2 1 3 27 27 H 1.08003 * 119.37528 * 0.02562 * 4 3 2 28 28 H 1.07998 * 124.30508 * 179.97438 * 7 6 5 29 29 H 1.08001 * 122.54362 * 180.02562 * 8 7 6 30 30 H 0.97000 * 119.99830 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.3536 2.0235 -1.1725 5 6 2.8241 3.3471 -1.2072 6 16 3.3031 4.3467 -2.5746 7 6 3.6872 5.7043 -1.5347 8 6 3.4679 5.4157 -0.2652 9 6 2.9715 4.0749 -0.0204 10 6 2.6324 3.4544 1.2130 11 6 2.7670 4.1754 2.4429 12 7 2.8726 4.7477 3.4185 13 6 2.1656 2.1181 1.2183 14 6 1.8320 1.4912 2.4315 15 1 2.2540 0.5273 2.6751 16 6 0.9513 2.1173 3.3255 17 7 0.9088 1.7369 4.5749 18 14 -0.1665 3.4896 2.7284 19 1 0.4810 4.8015 2.9829 20 1 -0.4096 3.3317 1.2720 21 1 -1.4596 3.4265 3.4558 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5137 -0.8900 25 1 1.8934 -0.5138 -0.8899 26 1 1.8933 -0.5137 0.8900 27 1 2.2451 1.4757 -2.0970 28 1 4.0564 6.6559 -1.8876 29 1 3.6445 6.1242 0.5306 30 1 0.3000 2.1702 5.1933 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396217422.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:29 Heat of formation + Delta-G solvation = 42.543048 kcal Electronic energy + Delta-G solvation = -16355.394205 eV Core-core repulsion = 13819.845594 eV Total energy + Delta-G solvation = -2535.548611 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.057 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.59000 -37.33281 -37.13778 -35.25800 -33.43234 -32.31498 -29.73969 -27.47741 -24.84515 -24.12374 -22.94497 -21.19484 -19.32393 -19.23522 -17.63041 -17.06405 -16.74054 -15.59247 -15.16419 -15.11095 -15.06023 -14.77839 -14.32183 -14.12118 -13.86097 -13.77195 -13.51854 -13.30850 -12.96534 -12.72062 -12.49538 -12.20558 -12.15410 -11.73530 -11.58003 -11.43387 -11.33793 -11.08910 -10.18591 -9.19398 -8.94825 -8.48399 -6.60863 -0.23204 0.32064 0.81665 1.10502 1.17360 1.20520 1.29549 1.48308 1.98900 2.00466 2.15158 2.55520 3.25737 3.43239 3.86439 4.15282 4.26611 4.44128 4.61331 4.65077 4.79069 4.86886 4.95869 5.01673 5.13460 5.22762 5.30203 5.31690 5.48929 5.60884 5.64136 5.83793 5.96605 6.25090 6.50481 6.67515 6.85703 8.10203 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.020160 B = 0.010462 C = 0.007810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.538402 B = 2675.818414 C = 3584.358145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.063 4.063 3 C -0.113 4.113 4 C -0.040 4.040 5 C -0.216 4.216 6 S 0.109 5.891 7 C -0.170 4.170 8 C -0.159 4.159 9 C -0.023 4.023 10 C -0.153 4.153 11 C 0.294 3.706 12 N -0.509 5.509 13 C 0.129 3.871 14 C -0.472 4.472 15 H 0.087 0.913 16 C 0.074 3.926 17 N -0.835 5.835 18 Si 0.895 3.105 19 H -0.270 1.270 20 H -0.235 1.235 21 H -0.269 1.269 22 H 0.071 0.929 23 H 0.031 0.969 24 H 0.059 0.941 25 H 0.091 0.909 26 H 0.062 0.938 27 H 0.151 0.849 28 H 0.198 0.802 29 H 0.130 0.870 30 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.543 0.951 -15.475 15.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.101 4.101 3 C -0.116 4.116 4 C -0.062 4.062 5 C -0.331 4.331 6 S 0.372 5.628 7 C -0.304 4.304 8 C -0.190 4.190 9 C -0.033 4.033 10 C -0.162 4.162 11 C -0.016 4.016 12 N -0.189 5.189 13 C 0.123 3.877 14 C -0.502 4.502 15 H 0.105 0.895 16 C -0.142 4.142 17 N -0.461 5.461 18 Si 0.717 3.283 19 H -0.196 1.196 20 H -0.157 1.157 21 H -0.194 1.194 22 H 0.090 0.910 23 H 0.051 0.949 24 H 0.078 0.922 25 H 0.110 0.890 26 H 0.080 0.920 27 H 0.169 0.831 28 H 0.215 0.785 29 H 0.148 0.852 30 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 0.694 1.647 -15.279 15.383 hybrid contribution -0.594 0.729 2.119 2.318 sum 0.100 2.376 -13.159 13.372 Atomic orbital electron populations 1.21662 0.95073 1.01885 1.01157 1.20335 0.96105 0.90926 1.02697 1.20055 1.02069 0.98360 0.91154 1.20234 0.96080 0.91443 0.98443 1.22568 1.14572 0.99939 0.96028 1.83372 1.69079 1.03643 1.06755 1.25373 1.05400 1.04026 0.95603 1.20966 1.04938 0.95132 0.97975 1.19122 0.98817 0.93591 0.91789 1.16403 1.17973 0.96805 0.85022 1.25776 0.91576 0.91469 0.92805 1.80985 1.14153 1.12378 1.11360 1.17480 0.87546 0.88812 0.93846 1.19136 1.25362 1.06164 0.99543 0.89539 1.26292 0.97770 0.96709 0.93467 1.69623 1.32792 1.39624 1.04030 0.86520 0.79360 0.80537 0.81874 1.19577 1.15701 1.19426 0.91038 0.94934 0.92221 0.89047 0.91982 0.83142 0.78458 0.85181 0.90198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.20 9.89 71.98 0.71 -3.48 16 2 C -0.06 -1.97 5.57 29.85 0.17 -1.81 16 3 C -0.11 -4.22 5.14 -19.77 -0.10 -4.32 16 4 C -0.04 -1.30 9.57 22.23 0.21 -1.08 16 5 C -0.22 -7.38 6.50 23.25 0.15 -7.23 16 6 S 0.11 2.80 23.24 -56.49 -1.31 1.49 16 7 C -0.17 -4.38 11.03 66.89 0.74 -3.65 16 8 C -0.16 -5.34 9.96 23.09 0.23 -5.11 16 9 C -0.02 -0.92 5.99 -20.13 -0.12 -1.04 16 10 C -0.15 -7.10 4.74 -20.24 -0.10 -7.20 16 11 C 0.29 14.88 10.26 88.33 0.91 15.78 16 12 N -0.51 -27.09 17.73 19.00 0.34 -26.76 16 13 C 0.13 5.91 4.42 -21.22 -0.09 5.81 16 14 C -0.47 -24.00 7.73 23.33 0.18 -23.82 16 15 H 0.09 4.63 7.39 -2.91 -0.02 4.61 16 16 C 0.07 3.92 4.66 85.35 0.40 4.32 16 17 N -0.83 -46.10 13.92 21.88 0.30 -45.80 16 18 Si 0.89 42.86 24.81 68.60 1.70 44.57 16 19 H -0.27 -13.75 5.80 99.48 0.58 -13.17 16 20 H -0.23 -10.72 7.11 99.48 0.71 -10.01 16 21 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 22 H 0.07 1.76 8.14 -2.38 -0.02 1.74 16 23 H 0.03 1.16 7.94 -2.39 -0.02 1.14 16 24 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 25 H 0.09 2.18 8.02 -2.39 -0.02 2.16 16 26 H 0.06 2.14 6.88 -2.39 -0.02 2.13 16 27 H 0.15 3.66 8.03 -2.91 -0.02 3.64 16 28 H 0.20 3.46 8.06 -2.91 -0.02 3.44 16 29 H 0.13 4.36 8.04 -2.91 -0.02 4.34 16 30 H 0.29 14.94 8.29 -92.71 -0.77 14.17 16 Total: -1.00 -60.47 274.09 5.35 -55.12 By element: Atomic # 1 Polarization: 3.18 SS G_CDS: 1.04 Total: 4.22 kcal Atomic # 6 Polarization: -36.12 SS G_CDS: 3.28 Total: -32.84 kcal Atomic # 7 Polarization: -73.19 SS G_CDS: 0.64 Total: -72.55 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 1.70 Total: 44.57 kcal Atomic # 16 Polarization: 2.80 SS G_CDS: -1.31 Total: 1.49 kcal Total: -60.47 5.35 -55.12 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396217422.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.664 kcal (2) G-P(sol) polarization free energy of solvation -60.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.121 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds