Wall clock time and date at job start Mon Mar 30 2020 06:47:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50700 * 109.47450 * 2 1 4 4 C 1.32767 * 122.05141 * 265.02582 * 3 2 1 5 5 S 1.75491 * 110.75598 * 180.02562 * 4 3 2 6 6 C 1.76100 * 91.51878 * 0.02562 * 5 4 3 7 7 C 1.38761 * 130.43044 * 180.02562 * 6 5 4 8 8 C 1.40277 * 121.00748 * 179.19835 * 7 6 5 9 9 C 1.41098 * 119.80241 * 180.25138 * 8 7 6 10 10 H 1.08003 * 119.99886 * 25.64422 * 9 8 7 11 11 C 1.39853 * 119.99802 * 205.64724 * 9 8 7 12 12 N 1.30896 * 120.00131 * 18.12132 * 11 9 8 13 13 Si 1.86800 * 119.99851 * 198.11347 * 11 9 8 14 14 H 1.48498 * 109.46921 * 60.00249 * 13 11 9 15 15 H 1.48501 * 109.47266 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.47198 * 300.00360 * 13 11 9 17 17 C 1.40794 * 120.39774 * 0.74724 * 8 7 6 18 18 C 1.37982 * 120.04756 * 359.52143 * 17 8 7 19 19 C 1.43205 * 120.12364 * 180.02562 * 18 17 8 20 20 N 3.16664 * 80.60395 * 101.31584 * 2 1 3 21 21 C 1.39936 * 122.05359 * 84.73994 * 3 2 1 22 22 H 1.08992 * 109.47229 * 180.02562 * 1 2 3 23 23 H 1.09005 * 109.46933 * 59.99760 * 1 2 3 24 24 H 1.09002 * 109.46810 * 300.00310 * 1 2 3 25 25 H 1.09005 * 109.46933 * 120.00240 * 2 1 3 26 26 H 1.08997 * 109.47150 * 239.99394 * 2 1 3 27 27 H 1.08003 * 124.62190 * 0.02562 * 4 3 2 28 28 H 1.07998 * 119.49786 * 359.97438 * 7 6 5 29 29 H 0.96998 * 119.99894 * 180.02562 * 12 11 9 30 30 H 1.07994 * 119.97600 * 179.54076 * 17 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3593 2.0525 -1.1211 5 16 2.9056 3.6847 -0.7786 6 6 2.6650 3.4525 0.9504 7 6 2.8744 4.3205 2.0126 8 6 2.5974 3.9292 3.3310 9 6 2.8148 4.8342 4.3914 10 1 2.7853 5.8982 4.2080 11 6 3.0684 4.3535 5.6800 12 7 3.4541 3.1146 5.8522 13 14 2.8571 5.4796 7.1554 14 1 1.4510 5.9529 7.2194 15 1 3.1864 4.7353 8.3975 16 1 3.7665 6.6461 7.0221 17 6 2.1136 2.6354 3.6034 18 6 1.8995 1.7461 2.5703 19 6 1.4069 0.4299 2.8454 20 7 1.0130 -0.6130 3.0634 21 6 2.1775 2.1572 1.1810 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 0.5139 0.8900 25 1 1.8933 -0.5139 0.8900 26 1 1.8933 -0.5139 -0.8899 27 1 2.2974 1.6208 -2.1091 28 1 3.2446 5.3167 1.8204 29 1 3.6297 2.7811 6.7460 30 1 1.9096 2.3389 4.6216 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396217425.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:01 Heat of formation + Delta-G solvation = 41.753529 kcal Electronic energy + Delta-G solvation = -15926.357633 eV Core-core repulsion = 13390.774785 eV Total energy + Delta-G solvation = -2535.582847 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.057 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.38461 -37.63352 -37.37067 -35.19413 -32.73970 -31.94551 -30.25341 -27.16762 -25.23278 -24.27393 -23.15967 -20.52569 -20.16616 -18.39696 -17.41186 -16.95180 -16.33573 -16.17237 -15.24072 -15.22023 -14.85802 -14.63323 -14.12337 -14.02341 -13.94554 -13.60471 -13.37050 -13.18679 -12.90320 -12.75226 -12.65198 -12.41208 -11.95227 -11.71064 -11.66371 -11.56992 -11.35636 -10.94781 -10.15207 -9.19793 -8.86595 -8.41869 -6.39774 -0.22633 0.54657 0.92113 1.33974 1.34830 1.44451 1.55547 1.69707 1.72321 2.07090 2.18371 2.70713 3.11418 3.49024 3.99108 4.04293 4.24240 4.45935 4.54657 4.66497 4.78388 4.87200 4.94092 4.98851 5.10408 5.14801 5.22868 5.28672 5.38420 5.74908 5.81295 5.84478 5.93925 6.33397 6.53621 6.67751 6.72706 8.13437 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.023774 B = 0.007187 C = 0.005717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.472863 B = 3894.863694 C = 4896.117857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.071 4.071 3 C -0.065 4.065 4 C -0.239 4.239 5 S 0.055 5.945 6 C -0.086 4.086 7 C -0.215 4.215 8 C 0.098 3.902 9 C -0.458 4.458 10 H 0.097 0.903 11 C 0.038 3.962 12 N -0.809 5.809 13 Si 0.985 3.015 14 H -0.257 1.257 15 H -0.270 1.270 16 H -0.255 1.255 17 C -0.077 4.077 18 C -0.013 4.013 19 C 0.288 3.712 20 N -0.463 5.463 21 C -0.171 4.171 22 H 0.065 0.935 23 H 0.070 0.930 24 H 0.030 0.970 25 H 0.049 0.951 26 H 0.092 0.908 27 H 0.184 0.816 28 H 0.110 0.890 29 H 0.297 0.703 30 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.584 0.948 -5.913 6.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.111 4.111 3 C -0.077 4.077 4 C -0.372 4.372 5 S 0.318 5.682 6 C -0.201 4.201 7 C -0.241 4.241 8 C 0.092 3.908 9 C -0.486 4.486 10 H 0.115 0.885 11 C -0.181 4.181 12 N -0.433 5.433 13 Si 0.806 3.194 14 H -0.181 1.181 15 H -0.195 1.195 16 H -0.179 1.179 17 C -0.099 4.099 18 C -0.019 4.019 19 C -0.025 4.025 20 N -0.140 5.140 21 C -0.179 4.179 22 H 0.084 0.916 23 H 0.089 0.911 24 H 0.049 0.951 25 H 0.067 0.933 26 H 0.111 0.889 27 H 0.201 0.799 28 H 0.129 0.871 29 H 0.109 0.891 30 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -1.603 0.299 -6.393 6.597 hybrid contribution -0.179 -0.380 1.653 1.705 sum -1.783 -0.081 -4.740 5.065 Atomic orbital electron populations 1.21639 0.94277 1.01740 1.01571 1.20408 0.96610 0.91489 1.02559 1.18572 1.00669 0.97189 0.91228 1.24877 1.12905 0.97522 1.01944 1.83502 1.72278 1.14592 0.97838 1.22374 1.03303 0.97025 0.97432 1.20304 1.12998 0.99889 0.90939 1.17502 0.89032 0.91704 0.92533 1.19961 1.40567 0.95638 0.92423 0.88506 1.26869 0.90806 0.96988 1.03401 1.69822 1.28953 1.17555 1.26956 0.85161 0.80354 0.78580 0.75349 1.18110 1.19476 1.17869 1.21455 0.97450 0.93960 0.97061 1.16818 1.05493 0.86656 0.92913 1.25809 0.92363 0.92762 0.91524 1.81061 1.11269 1.11802 1.09828 1.18449 1.13764 0.94592 0.91132 0.91648 0.91121 0.95119 0.93263 0.88937 0.79856 0.87149 0.89149 0.85814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.97 9.64 71.98 0.69 -3.28 16 2 C -0.07 -2.24 5.41 29.85 0.16 -2.08 16 3 C -0.06 -2.35 5.06 -20.63 -0.10 -2.45 16 4 C -0.24 -7.58 10.81 66.64 0.72 -6.86 16 5 S 0.05 1.86 23.30 -56.49 -1.32 0.54 16 6 C -0.09 -3.65 6.46 22.90 0.15 -3.51 16 7 C -0.21 -9.64 9.73 22.89 0.22 -9.42 16 8 C 0.10 4.69 5.55 -21.46 -0.12 4.58 16 9 C -0.46 -21.20 9.00 23.36 0.21 -20.99 16 10 H 0.10 4.21 7.91 -2.91 -0.02 4.18 16 11 C 0.04 1.64 5.11 85.22 0.44 2.08 16 12 N -0.81 -37.38 10.98 21.81 0.24 -37.14 16 13 Si 0.99 33.14 29.60 68.60 2.03 35.17 16 14 H -0.26 -8.49 7.11 99.48 0.71 -7.79 16 15 H -0.27 -8.79 7.11 99.48 0.71 -8.09 16 16 H -0.25 -8.27 7.11 99.48 0.71 -7.56 16 17 C -0.08 -3.64 8.31 22.83 0.19 -3.45 16 18 C -0.01 -0.57 5.93 -19.64 -0.12 -0.69 16 19 C 0.29 12.30 11.36 88.33 1.00 13.30 16 20 N -0.46 -19.45 17.95 19.00 0.34 -19.11 16 21 C -0.17 -7.27 6.02 -19.91 -0.12 -7.39 16 22 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 23 H 0.07 1.83 8.14 -2.38 -0.02 1.81 16 24 H 0.03 1.03 7.19 -2.39 -0.02 1.01 16 25 H 0.05 1.76 5.46 -2.38 -0.01 1.75 16 26 H 0.09 2.40 8.08 -2.39 -0.02 2.38 16 27 H 0.18 4.46 8.06 -2.91 -0.02 4.44 16 28 H 0.11 4.66 8.06 -2.91 -0.02 4.63 16 29 H 0.30 12.47 8.30 -92.71 -0.77 11.70 16 30 H 0.12 6.05 6.16 -2.91 -0.02 6.03 16 Total: -1.00 -50.28 277.01 5.80 -44.48 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: 1.18 Total: 16.21 kcal Atomic # 6 Polarization: -43.48 SS G_CDS: 3.32 Total: -40.15 kcal Atomic # 7 Polarization: -56.82 SS G_CDS: 0.58 Total: -56.24 kcal Atomic # 14 Polarization: 33.14 SS G_CDS: 2.03 Total: 35.17 kcal Atomic # 16 Polarization: 1.86 SS G_CDS: -1.32 Total: 0.54 kcal Total: -50.28 5.80 -44.48 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396217425.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.238 kcal (2) G-P(sol) polarization free energy of solvation -50.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.485 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds