Wall clock time and date at job start Mon Mar 30 2020 06:46:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50697 * 109.47025 * 2 1 4 4 C 1.39274 * 119.33581 * 90.00082 * 3 2 1 5 5 S 1.76110 * 130.44795 * 0.02562 * 4 3 2 6 6 C 1.75507 * 91.49907 * 180.02562 * 5 4 3 7 7 C 1.32841 * 110.66801 * 0.02562 * 6 5 4 8 8 C 1.39834 * 115.85269 * 0.02562 * 7 6 5 9 9 C 1.47977 * 129.02588 * 179.97438 * 8 7 6 10 10 C 1.40676 * 120.29074 * 359.72282 * 9 8 7 11 11 H 1.08000 * 120.00457 * 334.24194 * 10 9 8 12 12 C 1.39977 * 120.00079 * 154.23594 * 10 9 8 13 13 N 1.30850 * 119.99655 * 343.40696 * 12 10 9 14 14 Si 1.86799 * 120.00021 * 163.39980 * 12 10 9 15 15 H 1.48496 * 109.47166 * 60.00816 * 14 12 10 16 16 H 1.48506 * 109.46834 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.47252 * 300.00570 * 14 12 10 18 18 C 1.39927 * 119.41105 * 179.97438 * 9 8 7 19 19 C 1.39183 * 119.98930 * 0.02562 * 18 9 8 20 20 C 1.43199 * 119.64022 * 180.02562 * 19 18 9 21 21 N 3.52496 * 94.70842 * 283.44671 * 2 1 3 22 22 H 1.09000 * 109.47433 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.47216 * 300.00321 * 1 2 3 24 24 H 1.08998 * 109.47188 * 59.99820 * 1 2 3 25 25 H 1.08996 * 109.47370 * 240.00045 * 2 1 3 26 26 H 1.09005 * 109.47065 * 119.99526 * 2 1 3 27 27 H 1.07994 * 124.66601 * 180.02562 * 6 5 4 28 28 H 1.08002 * 122.07586 * 180.02562 * 7 6 5 29 29 H 0.97003 * 119.99679 * 179.97438 * 13 12 10 30 30 H 1.08000 * 120.00961 * 179.97438 * 18 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2597 2.0641 1.2141 5 16 2.0575 1.4901 2.8668 6 6 2.5997 3.0278 3.5161 7 6 2.8969 3.8725 2.5349 8 6 2.7235 3.3839 1.2362 9 6 2.9623 4.0655 -0.0554 10 6 3.4241 5.3940 -0.0819 11 1 3.2216 6.0529 0.7495 12 6 4.1463 5.8620 -1.1859 13 7 4.6715 5.0130 -2.0317 14 14 4.3599 7.6986 -1.4518 15 1 5.0649 8.2889 -0.2857 16 1 5.1577 7.9310 -2.6826 17 1 3.0267 8.3359 -1.5987 18 6 2.7196 3.3785 -1.2500 19 6 2.2572 2.0661 -1.2162 20 6 2.0118 1.3699 -2.4433 21 7 1.8193 0.8169 -3.4168 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 2.6807 3.2559 4.5686 28 1 3.2506 4.8745 2.7281 29 1 5.1717 5.3373 -2.7969 30 1 2.8902 3.8667 -2.1981 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396217466.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:07 Heat of formation + Delta-G solvation = 46.348288 kcal Electronic energy + Delta-G solvation = -15971.005911 eV Core-core repulsion = 13435.622307 eV Total energy + Delta-G solvation = -2535.383604 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.057 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.62437 -36.13880 -34.67775 -34.41427 -32.15249 -29.40094 -28.57222 -25.62542 -23.31094 -22.88478 -20.63425 -19.84799 -18.50840 -16.45646 -16.17517 -15.26540 -14.80173 -14.48146 -13.59489 -13.48154 -13.28002 -12.88868 -12.75573 -12.41428 -12.28796 -11.96145 -11.66117 -11.64082 -11.47573 -11.34728 -11.13231 -10.73709 -10.58521 -10.49851 -10.03601 -9.90070 -9.63118 -9.47419 -8.37360 -7.49472 -7.22078 -6.93179 -4.66747 1.40762 2.43656 2.50149 2.82991 2.87111 2.88793 2.92993 3.07113 3.46293 3.61501 3.90235 4.34522 4.87006 5.19810 5.56124 5.57771 5.74733 5.93352 6.11944 6.23703 6.30084 6.34601 6.44484 6.60467 6.66964 6.73386 6.87376 6.92074 7.05996 7.42082 7.50062 7.51970 7.67273 8.05151 8.25930 8.35263 8.40749 9.67786 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.018219 B = 0.008795 C = 0.006153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.500668 B = 3182.964012 C = 4549.398079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.068 4.068 3 C -0.156 4.156 4 C -0.064 4.064 5 S 0.014 5.986 6 C -0.268 4.268 7 C -0.062 4.062 8 C -0.171 4.171 9 C 0.147 3.853 10 C -0.417 4.417 11 H 0.092 0.908 12 C 0.070 3.930 13 N -0.762 5.762 14 Si 0.919 3.081 15 H -0.260 1.260 16 H -0.274 1.274 17 H -0.258 1.258 18 C -0.140 4.140 19 C 0.020 3.980 20 C 0.284 3.716 21 N -0.467 5.467 22 H 0.045 0.955 23 H 0.056 0.944 24 H 0.050 0.950 25 H 0.055 0.945 26 H 0.060 0.940 27 H 0.147 0.853 28 H 0.127 0.873 29 H 0.293 0.707 30 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.987 0.091 5.143 5.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.106 4.106 3 C -0.166 4.166 4 C -0.179 4.179 5 S 0.275 5.725 6 C -0.402 4.402 7 C -0.092 4.092 8 C -0.178 4.178 9 C 0.142 3.858 10 C -0.443 4.443 11 H 0.110 0.890 12 C -0.153 4.153 13 N -0.384 5.384 14 Si 0.742 3.258 15 H -0.184 1.184 16 H -0.198 1.198 17 H -0.182 1.182 18 C -0.164 4.164 19 C 0.014 3.986 20 C -0.030 4.030 21 N -0.144 5.144 22 H 0.065 0.935 23 H 0.075 0.925 24 H 0.069 0.931 25 H 0.074 0.926 26 H 0.078 0.922 27 H 0.165 0.835 28 H 0.145 0.855 29 H 0.104 0.896 30 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -2.575 -2.083 4.176 5.330 hybrid contribution 0.836 2.312 -0.361 2.485 sum -1.739 0.228 3.814 4.198 Atomic orbital electron populations 1.21738 0.95942 1.00370 1.01961 1.20267 0.95380 0.93764 1.01138 1.18051 1.13397 0.95937 0.89192 1.21827 1.04522 0.96892 0.94673 1.83517 1.73362 1.17104 0.98522 1.24664 1.16205 0.97565 1.01718 1.19713 0.98609 0.99631 0.91239 1.19199 1.12046 0.93076 0.93497 1.18214 0.87737 0.91869 0.87984 1.19670 1.26214 0.95936 1.02529 0.89042 1.26149 0.93317 1.01379 0.94490 1.69784 1.20931 1.37443 1.10279 0.86148 0.79898 0.80707 0.79059 1.18411 1.19836 1.18222 1.21090 1.03936 0.92208 0.99192 1.15563 1.04250 0.93812 0.84939 1.26131 0.92095 0.92002 0.92769 1.81070 1.11110 1.10451 1.11733 0.93544 0.92516 0.93127 0.92615 0.92155 0.83544 0.85508 0.89602 0.85069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.30 9.89 37.16 0.37 -1.93 16 2 C -0.07 -1.21 5.46 -27.89 -0.15 -1.37 16 3 C -0.16 -3.23 5.20 -103.76 -0.54 -3.77 16 4 C -0.06 -1.35 6.28 -38.57 -0.24 -1.59 16 5 S 0.01 0.25 22.53 -107.50 -2.42 -2.17 16 6 C -0.27 -4.75 11.12 28.87 0.32 -4.43 16 7 C -0.06 -1.22 9.74 -40.84 -0.40 -1.62 16 8 C -0.17 -3.78 6.02 -104.68 -0.63 -4.41 16 9 C 0.15 3.44 5.74 -104.35 -0.60 2.84 16 10 C -0.42 -9.37 8.80 -38.01 -0.33 -9.70 16 11 H 0.09 1.93 7.51 -52.49 -0.39 1.53 16 12 C 0.07 1.49 5.15 -17.32 -0.09 1.40 16 13 N -0.76 -17.14 10.97 55.55 0.61 -16.53 16 14 Si 0.92 16.07 29.59 -169.99 -5.03 11.04 16 15 H -0.26 -4.49 7.11 56.52 0.40 -4.09 16 16 H -0.27 -4.73 7.11 56.52 0.40 -4.32 16 17 H -0.26 -4.51 7.11 56.52 0.40 -4.11 16 18 C -0.14 -3.23 8.33 -38.60 -0.32 -3.55 16 19 C 0.02 0.45 5.71 -107.15 -0.61 -0.17 16 20 C 0.28 6.04 13.62 -22.47 -0.31 5.73 16 21 N -0.47 -10.09 18.54 41.84 0.78 -9.32 16 22 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 23 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 24 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 25 H 0.06 1.01 6.99 -51.93 -0.36 0.64 16 26 H 0.06 1.02 7.53 -51.93 -0.39 0.63 16 27 H 0.15 2.16 8.06 -52.49 -0.42 1.73 16 28 H 0.13 2.29 7.71 -52.49 -0.40 1.89 16 29 H 0.29 5.98 8.30 -40.82 -0.34 5.64 16 30 H 0.13 3.12 6.18 -52.49 -0.32 2.79 16 LS Contribution 280.73 15.07 4.23 4.23 Total: -1.00 -23.78 280.73 -8.08 -31.85 By element: Atomic # 1 Polarization: 6.17 SS G_CDS: -2.70 Total: 3.47 kcal Atomic # 6 Polarization: -19.04 SS G_CDS: -3.54 Total: -22.58 kcal Atomic # 7 Polarization: -27.23 SS G_CDS: 1.39 Total: -25.85 kcal Atomic # 14 Polarization: 16.07 SS G_CDS: -5.03 Total: 11.04 kcal Atomic # 16 Polarization: 0.25 SS G_CDS: -2.42 Total: -2.17 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -23.78 -8.08 -31.85 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396217466.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.200 kcal (2) G-P(sol) polarization free energy of solvation -23.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.852 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds