Wall clock time and date at job start Mon Mar 30 2020 06:46:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50697 * 109.47025 * 2 1 4 4 C 1.39274 * 119.33581 * 90.00082 * 3 2 1 5 5 S 1.76110 * 130.44795 * 0.02562 * 4 3 2 6 6 C 1.75507 * 91.49907 * 180.02562 * 5 4 3 7 7 C 1.32841 * 110.66801 * 0.02562 * 6 5 4 8 8 C 1.39834 * 115.85269 * 0.02562 * 7 6 5 9 9 C 1.47977 * 129.02588 * 179.97438 * 8 7 6 10 10 C 1.40676 * 120.29074 * 359.72282 * 9 8 7 11 11 H 1.08000 * 120.00457 * 334.24194 * 10 9 8 12 12 C 1.39977 * 120.00079 * 154.23594 * 10 9 8 13 13 N 1.30850 * 119.99655 * 343.40696 * 12 10 9 14 14 Si 1.86799 * 120.00021 * 163.39980 * 12 10 9 15 15 H 1.48496 * 109.47166 * 60.00816 * 14 12 10 16 16 H 1.48506 * 109.46834 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.47252 * 300.00570 * 14 12 10 18 18 C 1.39927 * 119.41105 * 179.97438 * 9 8 7 19 19 C 1.39183 * 119.98930 * 0.02562 * 18 9 8 20 20 C 1.43199 * 119.64022 * 180.02562 * 19 18 9 21 21 N 3.52496 * 94.70842 * 283.44671 * 2 1 3 22 22 H 1.09000 * 109.47433 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.47216 * 300.00321 * 1 2 3 24 24 H 1.08998 * 109.47188 * 59.99820 * 1 2 3 25 25 H 1.08996 * 109.47370 * 240.00045 * 2 1 3 26 26 H 1.09005 * 109.47065 * 119.99526 * 2 1 3 27 27 H 1.07994 * 124.66601 * 180.02562 * 6 5 4 28 28 H 1.08002 * 122.07586 * 180.02562 * 7 6 5 29 29 H 0.97003 * 119.99679 * 179.97438 * 13 12 10 30 30 H 1.08000 * 120.00961 * 179.97438 * 18 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2597 2.0641 1.2141 5 16 2.0575 1.4901 2.8668 6 6 2.5997 3.0278 3.5161 7 6 2.8969 3.8725 2.5349 8 6 2.7235 3.3839 1.2362 9 6 2.9623 4.0655 -0.0554 10 6 3.4241 5.3940 -0.0819 11 1 3.2216 6.0529 0.7495 12 6 4.1463 5.8620 -1.1859 13 7 4.6715 5.0130 -2.0317 14 14 4.3599 7.6986 -1.4518 15 1 5.0649 8.2889 -0.2857 16 1 5.1577 7.9310 -2.6826 17 1 3.0267 8.3359 -1.5987 18 6 2.7196 3.3785 -1.2500 19 6 2.2572 2.0661 -1.2162 20 6 2.0118 1.3699 -2.4433 21 7 1.8193 0.8169 -3.4168 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 2.6807 3.2559 4.5686 28 1 3.2506 4.8745 2.7281 29 1 5.1717 5.3373 -2.7969 30 1 2.8902 3.8667 -2.1981 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396217466.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:07 Heat of formation + Delta-G solvation = 37.492866 kcal Electronic energy + Delta-G solvation = -15971.389910 eV Core-core repulsion = 13435.622307 eV Total energy + Delta-G solvation = -2535.767603 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.057 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.24816 -37.80830 -36.26978 -36.00102 -33.69913 -30.99250 -30.15560 -27.20795 -24.91498 -24.39481 -22.20035 -21.42315 -20.12029 -18.12565 -17.72020 -16.75986 -16.36624 -16.05629 -15.09250 -15.03586 -14.85056 -14.45077 -14.27958 -14.03334 -13.80378 -13.61474 -13.22810 -13.10853 -12.97002 -12.85616 -12.55383 -12.27651 -12.04104 -11.92583 -11.57473 -11.47168 -11.19661 -11.06147 -9.96909 -9.11391 -8.80337 -8.47625 -6.33990 -0.22394 0.80712 0.95701 1.32271 1.39276 1.42616 1.53376 1.57267 1.74067 2.15856 2.27010 2.69734 3.16990 3.52459 4.10717 4.14992 4.30184 4.54703 4.67113 4.74470 4.80137 4.92387 5.00524 5.06877 5.11639 5.27706 5.33526 5.36901 5.46957 5.80297 5.86965 5.90145 5.99281 6.37687 6.56986 6.70186 6.74748 8.12696 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.018219 B = 0.008795 C = 0.006153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.500668 B = 3182.964012 C = 4549.398079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.067 4.067 3 C -0.150 4.150 4 C -0.098 4.098 5 S 0.065 5.935 6 C -0.242 4.242 7 C -0.093 4.093 8 C -0.178 4.178 9 C 0.122 3.878 10 C -0.446 4.446 11 H 0.097 0.903 12 C 0.036 3.964 13 N -0.800 5.800 14 Si 0.985 3.015 15 H -0.253 1.253 16 H -0.271 1.271 17 H -0.257 1.257 18 C -0.166 4.166 19 C 0.009 3.991 20 C 0.291 3.709 21 N -0.475 5.475 22 H 0.072 0.928 23 H 0.058 0.942 24 H 0.037 0.963 25 H 0.051 0.949 26 H 0.073 0.927 27 H 0.185 0.815 28 H 0.138 0.862 29 H 0.297 0.703 30 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.469 -0.263 7.291 7.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.105 4.105 3 C -0.159 4.159 4 C -0.213 4.213 5 S 0.327 5.673 6 C -0.375 4.375 7 C -0.122 4.122 8 C -0.186 4.186 9 C 0.116 3.884 10 C -0.473 4.473 11 H 0.115 0.885 12 C -0.184 4.184 13 N -0.423 5.423 14 Si 0.805 3.195 15 H -0.176 1.176 16 H -0.195 1.195 17 H -0.182 1.182 18 C -0.190 4.190 19 C 0.003 3.997 20 C -0.022 4.022 21 N -0.152 5.152 22 H 0.091 0.909 23 H 0.077 0.923 24 H 0.057 0.943 25 H 0.070 0.930 26 H 0.092 0.908 27 H 0.203 0.797 28 H 0.155 0.845 29 H 0.108 0.892 30 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -3.067 -2.462 6.329 7.451 hybrid contribution 0.932 2.258 -0.818 2.576 sum -2.135 -0.204 5.511 5.913 Atomic orbital electron populations 1.21690 0.94317 1.01999 1.01464 1.20322 0.96707 0.91873 1.01563 1.18414 1.11622 0.97089 0.88790 1.22195 1.05169 0.97143 0.96757 1.83325 1.72124 1.16402 0.95426 1.25239 1.12279 0.96721 1.03245 1.19845 1.00778 1.00968 0.90652 1.19594 1.11115 0.93680 0.94202 1.18504 0.88529 0.92683 0.88647 1.19884 1.27560 0.96169 1.03673 0.88488 1.26921 0.92434 1.05228 0.93772 1.69844 1.22089 1.39276 1.11057 0.85168 0.79702 0.75549 0.79083 1.17631 1.19505 1.18153 1.20951 1.06251 0.93077 0.98756 1.15653 1.04814 0.93638 0.85629 1.26087 0.91800 0.91709 0.92634 1.81054 1.11546 1.10877 1.11701 0.90865 0.92289 0.94345 0.93010 0.90824 0.79736 0.84461 0.89235 0.86799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.14 9.89 71.98 0.71 -3.42 16 2 C -0.07 -2.29 5.46 29.85 0.16 -2.13 16 3 C -0.15 -6.15 5.20 -19.31 -0.10 -6.25 16 4 C -0.10 -4.00 6.28 22.92 0.14 -3.86 16 5 S 0.07 2.14 22.53 -56.49 -1.27 0.87 16 6 C -0.24 -7.66 11.12 66.64 0.74 -6.92 16 7 C -0.09 -3.50 9.74 21.48 0.21 -3.29 16 8 C -0.18 -7.85 6.02 -19.90 -0.12 -7.97 16 9 C 0.12 5.86 5.74 -19.69 -0.11 5.74 16 10 C -0.45 -20.69 8.80 23.29 0.21 -20.48 16 11 H 0.10 4.18 7.51 -2.91 -0.02 4.16 16 12 C 0.04 1.57 5.15 85.26 0.44 2.01 16 13 N -0.80 -37.54 10.97 21.84 0.24 -37.30 16 14 Si 0.99 33.32 29.59 68.60 2.03 35.35 16 15 H -0.25 -8.15 7.11 99.48 0.71 -7.45 16 16 H -0.27 -8.89 7.11 99.48 0.71 -8.18 16 17 H -0.26 -8.58 7.11 99.48 0.71 -7.87 16 18 C -0.17 -8.03 8.33 22.91 0.19 -7.84 16 19 C 0.01 0.39 5.71 -21.50 -0.12 0.27 16 20 C 0.29 12.65 13.62 88.33 1.20 13.85 16 21 N -0.47 -20.72 18.54 19.00 0.35 -20.37 16 22 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 23 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 24 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 25 H 0.05 1.81 6.99 -2.39 -0.02 1.79 16 26 H 0.07 2.31 7.53 -2.38 -0.02 2.29 16 27 H 0.19 4.44 8.06 -2.91 -0.02 4.41 16 28 H 0.14 4.78 7.71 -2.91 -0.02 4.76 16 29 H 0.30 12.64 8.30 -92.71 -0.77 11.87 16 30 H 0.11 5.80 6.18 -2.91 -0.02 5.78 16 Total: -1.00 -51.51 280.73 6.07 -45.44 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: 1.17 Total: 16.30 kcal Atomic # 6 Polarization: -43.85 SS G_CDS: 3.55 Total: -40.30 kcal Atomic # 7 Polarization: -58.26 SS G_CDS: 0.59 Total: -57.67 kcal Atomic # 14 Polarization: 33.32 SS G_CDS: 2.03 Total: 35.35 kcal Atomic # 16 Polarization: 2.14 SS G_CDS: -1.27 Total: 0.87 kcal Total: -51.51 6.07 -45.44 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396217466.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.934 kcal (2) G-P(sol) polarization free energy of solvation -51.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.441 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds