Wall clock time and date at job start Mon Mar 30 2020 06:45:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50705 * 109.47120 * 2 1 4 4 C 1.36065 * 119.67395 * 266.14563 * 3 2 1 5 5 C 1.40052 * 120.24890 * 180.02562 * 4 3 2 6 6 C 1.43200 * 120.07527 * 179.97438 * 5 4 3 7 7 N 5.93752 * 107.98399 * 322.68417 * 2 1 3 8 8 C 1.39171 * 119.84773 * 359.97438 * 5 4 3 9 9 C 1.39450 * 120.10807 * 359.97438 * 8 5 4 10 10 S 1.75793 * 130.12548 * 180.02562 * 9 8 5 11 11 C 1.69972 * 93.22192 * 180.02562 * 10 9 8 12 12 C 1.36534 * 111.97665 * 0.02562 * 11 10 9 13 13 C 1.40859 * 123.27826 * 180.27004 * 12 11 10 14 14 H 1.07999 * 120.00071 * 147.35654 * 13 12 11 15 15 C 1.39713 * 119.99666 * 327.36312 * 13 12 11 16 16 N 1.31072 * 119.99760 * 170.19561 * 15 13 12 17 17 Si 1.86798 * 120.00262 * 350.18917 * 15 13 12 18 18 H 1.48494 * 109.47227 * 85.70903 * 17 15 13 19 19 H 1.48507 * 109.47398 * 205.70519 * 17 15 13 20 20 H 1.48506 * 109.47159 * 325.70262 * 17 15 13 21 21 C 1.39600 * 119.68425 * 0.04650 * 9 8 5 22 22 H 1.09004 * 109.47153 * 60.00041 * 1 2 3 23 23 H 1.09002 * 109.46813 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.47220 * 300.00021 * 1 2 3 25 25 H 1.09000 * 109.47192 * 240.00382 * 2 1 3 26 26 H 1.08996 * 109.47409 * 120.00080 * 2 1 3 27 27 H 1.08000 * 119.87578 * 359.97438 * 4 3 2 28 28 H 1.08003 * 119.94473 * 180.02562 * 8 5 4 29 29 H 1.08005 * 124.00755 * 180.02562 * 11 10 9 30 30 H 0.96999 * 120.00070 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3318 2.0295 -1.1795 5 6 2.8000 3.3493 -1.1935 6 6 3.1146 3.9860 -2.4370 7 7 3.3632 4.4914 -3.4235 8 6 2.9589 4.0406 0.0039 9 6 2.6522 3.4214 1.2151 10 16 2.7513 4.0365 2.8590 11 6 2.1888 2.5836 3.5386 12 6 1.9251 1.6421 2.5856 13 6 1.4422 0.3533 2.8853 14 1 0.7785 -0.1483 2.1966 15 6 1.8217 -0.2761 4.0734 16 7 1.2292 -1.3842 4.4463 17 14 3.1737 0.4614 5.1306 18 1 2.5905 1.4797 6.0406 19 1 3.8148 -0.6108 5.9336 20 1 4.1907 1.1016 4.2581 21 6 2.1865 2.1054 1.2203 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 2.2087 1.4924 -2.1084 28 1 3.3194 5.0587 -0.0051 29 1 2.0557 2.4243 4.5985 30 1 1.4929 -1.8214 5.2710 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396217474.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:19 Heat of formation + Delta-G solvation = 52.021621 kcal Electronic energy + Delta-G solvation = -16045.279758 eV Core-core repulsion = 13510.142168 eV Total energy + Delta-G solvation = -2535.137589 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.057 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.47207 -36.62813 -34.99603 -33.78198 -32.76265 -29.57918 -28.93310 -26.02243 -23.77888 -23.19748 -21.22856 -20.06328 -17.93132 -17.15275 -16.47726 -15.34125 -15.11149 -14.56142 -13.99415 -13.61116 -13.52024 -13.21806 -12.90562 -12.79887 -12.70342 -12.27819 -12.08100 -11.69838 -11.55898 -11.27527 -11.04808 -10.75702 -10.40612 -10.22328 -10.04510 -9.90184 -9.61471 -9.27379 -8.69819 -7.78949 -7.03475 -6.96658 -4.56968 0.96182 1.67903 2.40809 2.74724 2.88596 3.04199 3.13028 3.26374 3.39682 3.55889 3.94417 4.15718 4.21932 4.93927 5.10980 5.29488 5.56760 5.64674 5.69727 5.96199 5.99181 6.08089 6.30145 6.39038 6.43789 6.56945 6.63717 6.79797 6.87361 6.99391 7.16642 7.32417 7.50205 7.66890 8.16961 8.29734 8.66551 10.01175 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.023359 B = 0.008288 C = 0.006517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.408079 B = 3377.513313 C = 4295.346004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.098 4.098 3 C -0.026 4.026 4 C -0.101 4.101 5 C -0.035 4.035 6 C 0.273 3.727 7 N -0.443 5.443 8 C -0.046 4.046 9 C -0.141 4.141 10 S 0.072 5.928 11 C -0.435 4.435 12 C 0.081 3.919 13 C -0.429 4.429 14 H 0.114 0.886 15 C 0.085 3.915 16 N -0.813 5.813 17 Si 0.914 3.086 18 H -0.272 1.272 19 H -0.295 1.295 20 H -0.246 1.246 21 C -0.031 4.031 22 H 0.044 0.956 23 H 0.054 0.946 24 H 0.068 0.932 25 H 0.059 0.941 26 H 0.108 0.892 27 H 0.126 0.874 28 H 0.125 0.875 29 H 0.144 0.856 30 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.327 3.055 -3.746 5.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.135 4.135 3 C -0.028 4.028 4 C -0.125 4.125 5 C -0.041 4.041 6 C -0.042 4.042 7 N -0.119 5.119 8 C -0.072 4.072 9 C -0.256 4.256 10 S 0.336 5.664 11 C -0.570 4.570 12 C 0.072 3.928 13 C -0.461 4.461 14 H 0.132 0.868 15 C -0.134 4.134 16 N -0.437 5.437 17 Si 0.742 3.258 18 H -0.199 1.199 19 H -0.223 1.223 20 H -0.169 1.169 21 C -0.042 4.042 22 H 0.063 0.937 23 H 0.073 0.927 24 H 0.087 0.913 25 H 0.078 0.922 26 H 0.127 0.873 27 H 0.144 0.856 28 H 0.143 0.857 29 H 0.162 0.838 30 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 2.062 4.926 -4.360 6.894 hybrid contribution 0.026 -1.323 0.572 1.442 sum 2.088 3.602 -3.787 5.629 Atomic orbital electron populations 1.21729 0.94883 1.01479 1.01904 1.20858 0.96327 0.92268 1.04057 1.19324 0.96720 0.96328 0.90454 1.20334 1.01429 0.92801 0.97956 1.15627 1.07966 0.94512 0.86013 1.25769 0.92790 0.92852 0.92770 1.81185 1.10381 1.09154 1.11215 1.20304 0.99068 0.98866 0.88951 1.22559 1.06771 0.98315 0.97978 1.81885 1.72890 1.17677 0.93960 1.24039 1.32147 0.98088 1.02720 1.17518 0.93705 0.94378 0.87214 1.19340 1.24568 0.98160 1.04020 0.86815 1.26067 0.96638 0.94109 0.96589 1.69711 1.36356 1.15803 1.21871 0.86232 0.82052 0.77698 0.79798 1.19858 1.22294 1.16901 1.19699 0.97816 0.92109 0.94560 0.93684 0.92736 0.91309 0.92201 0.87344 0.85634 0.85689 0.83845 0.90373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.25 9.04 37.16 0.34 -1.91 16 2 C -0.10 -1.62 5.33 -27.88 -0.15 -1.77 16 3 C -0.03 -0.46 5.14 -104.44 -0.54 -1.00 16 4 C -0.10 -1.54 9.27 -39.68 -0.37 -1.91 16 5 C -0.04 -0.54 5.73 -106.94 -0.61 -1.15 16 6 C 0.27 4.15 15.32 -22.47 -0.34 3.81 16 7 N -0.44 -7.33 18.54 41.84 0.78 -6.56 16 8 C -0.05 -0.73 9.78 -38.78 -0.38 -1.10 16 9 C -0.14 -2.64 6.43 -38.62 -0.25 -2.88 16 10 S 0.07 1.37 22.96 -107.50 -2.47 -1.10 16 11 C -0.43 -9.71 8.04 30.12 0.24 -9.46 16 12 C 0.08 1.84 5.19 -106.18 -0.55 1.29 16 13 C -0.43 -10.22 7.78 -38.04 -0.30 -10.51 16 14 H 0.11 2.68 4.03 -52.49 -0.21 2.47 16 15 C 0.08 2.04 5.50 -17.33 -0.10 1.95 16 16 N -0.81 -20.11 13.94 55.54 0.77 -19.33 16 17 Si 0.91 19.99 24.62 -169.99 -4.18 15.81 16 18 H -0.27 -5.90 6.45 56.52 0.36 -5.53 16 19 H -0.30 -6.30 7.11 56.52 0.40 -5.90 16 20 H -0.25 -5.50 6.91 56.52 0.39 -5.11 16 21 C -0.03 -0.62 5.99 -105.09 -0.63 -1.25 16 22 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 23 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.07 1.24 6.90 -51.93 -0.36 0.88 16 25 H 0.06 0.83 8.04 -51.93 -0.42 0.42 16 26 H 0.11 2.07 5.45 -51.93 -0.28 1.79 16 27 H 0.13 1.62 8.05 -52.49 -0.42 1.19 16 28 H 0.13 1.70 8.06 -52.48 -0.42 1.28 16 29 H 0.14 3.30 4.68 -52.48 -0.25 3.05 16 30 H 0.29 6.53 8.30 -40.82 -0.34 6.19 16 LS Contribution 268.84 15.07 4.05 4.05 Total: -1.00 -24.67 268.84 -7.07 -31.75 By element: Atomic # 1 Polarization: 3.68 SS G_CDS: -2.39 Total: 1.29 kcal Atomic # 6 Polarization: -22.27 SS G_CDS: -3.63 Total: -25.91 kcal Atomic # 7 Polarization: -27.44 SS G_CDS: 1.55 Total: -25.89 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -4.18 Total: 15.81 kcal Atomic # 16 Polarization: 1.37 SS G_CDS: -2.47 Total: -1.10 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -24.67 -7.07 -31.75 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396217474.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.768 kcal (2) G-P(sol) polarization free energy of solvation -24.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.747 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds