Wall clock time and date at job start Mon Mar 30 2020 06:45:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50705 * 109.47120 * 2 1 4 4 C 1.36065 * 119.67395 * 266.14563 * 3 2 1 5 5 C 1.40052 * 120.24890 * 180.02562 * 4 3 2 6 6 C 1.43200 * 120.07527 * 179.97438 * 5 4 3 7 7 N 5.93752 * 107.98399 * 322.68417 * 2 1 3 8 8 C 1.39171 * 119.84773 * 359.97438 * 5 4 3 9 9 C 1.39450 * 120.10807 * 359.97438 * 8 5 4 10 10 S 1.75793 * 130.12548 * 180.02562 * 9 8 5 11 11 C 1.69972 * 93.22192 * 180.02562 * 10 9 8 12 12 C 1.36534 * 111.97665 * 0.02562 * 11 10 9 13 13 C 1.40859 * 123.27826 * 180.27004 * 12 11 10 14 14 H 1.07999 * 120.00071 * 147.35654 * 13 12 11 15 15 C 1.39713 * 119.99666 * 327.36312 * 13 12 11 16 16 N 1.31072 * 119.99760 * 170.19561 * 15 13 12 17 17 Si 1.86798 * 120.00262 * 350.18917 * 15 13 12 18 18 H 1.48494 * 109.47227 * 85.70903 * 17 15 13 19 19 H 1.48507 * 109.47398 * 205.70519 * 17 15 13 20 20 H 1.48506 * 109.47159 * 325.70262 * 17 15 13 21 21 C 1.39600 * 119.68425 * 0.04650 * 9 8 5 22 22 H 1.09004 * 109.47153 * 60.00041 * 1 2 3 23 23 H 1.09002 * 109.46813 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.47220 * 300.00021 * 1 2 3 25 25 H 1.09000 * 109.47192 * 240.00382 * 2 1 3 26 26 H 1.08996 * 109.47409 * 120.00080 * 2 1 3 27 27 H 1.08000 * 119.87578 * 359.97438 * 4 3 2 28 28 H 1.08003 * 119.94473 * 180.02562 * 8 5 4 29 29 H 1.08005 * 124.00755 * 180.02562 * 11 10 9 30 30 H 0.96999 * 120.00070 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3318 2.0295 -1.1795 5 6 2.8000 3.3493 -1.1935 6 6 3.1146 3.9860 -2.4370 7 7 3.3632 4.4914 -3.4235 8 6 2.9589 4.0406 0.0039 9 6 2.6522 3.4214 1.2151 10 16 2.7513 4.0365 2.8590 11 6 2.1888 2.5836 3.5386 12 6 1.9251 1.6421 2.5856 13 6 1.4422 0.3533 2.8853 14 1 0.7785 -0.1483 2.1966 15 6 1.8217 -0.2761 4.0734 16 7 1.2292 -1.3842 4.4463 17 14 3.1737 0.4614 5.1306 18 1 2.5905 1.4797 6.0406 19 1 3.8148 -0.6108 5.9336 20 1 4.1907 1.1016 4.2581 21 6 2.1865 2.1054 1.2203 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 2.2087 1.4924 -2.1084 28 1 3.3194 5.0587 -0.0051 29 1 2.0557 2.4243 4.5985 30 1 1.4929 -1.8214 5.2710 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396217474.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:19 Heat of formation + Delta-G solvation = 40.787286 kcal Electronic energy + Delta-G solvation = -16045.766915 eV Core-core repulsion = 13510.142168 eV Total energy + Delta-G solvation = -2535.624747 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.057 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.86417 -37.97994 -36.54042 -35.13381 -34.43903 -31.04394 -30.29299 -27.72399 -25.22847 -24.53062 -22.59560 -21.70355 -19.24120 -18.84699 -18.05440 -16.78737 -16.62761 -16.07775 -15.33519 -15.03456 -14.90742 -14.58345 -14.48768 -14.24408 -14.11561 -13.69791 -13.61269 -13.10252 -12.95349 -12.82128 -12.64312 -12.24039 -11.83128 -11.72286 -11.62486 -11.44870 -11.17711 -11.00791 -10.13236 -9.28710 -8.80175 -8.54900 -6.35241 -0.43269 0.34905 0.95468 1.11243 1.32589 1.37970 1.53150 1.64585 1.74523 2.08040 2.16100 2.82753 2.86268 3.19412 3.81232 4.00518 4.21055 4.32598 4.39249 4.65908 4.70472 4.72191 4.91800 5.02997 5.06824 5.17688 5.26450 5.32248 5.51756 5.54029 5.64602 5.79855 5.93882 6.39209 6.43901 6.54122 6.87415 8.24302 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.023359 B = 0.008288 C = 0.006517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.408079 B = 3377.513313 C = 4295.346004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.096 4.096 3 C -0.034 4.034 4 C -0.084 4.084 5 C -0.020 4.020 6 C 0.292 3.708 7 N -0.458 5.458 8 C -0.038 4.038 9 C -0.151 4.151 10 S 0.102 5.898 11 C -0.452 4.452 12 C 0.069 3.931 13 C -0.446 4.446 14 H 0.107 0.893 15 C 0.054 3.946 16 N -0.849 5.849 17 Si 0.953 3.047 18 H -0.273 1.273 19 H -0.288 1.288 20 H -0.255 1.255 21 C -0.061 4.061 22 H 0.067 0.933 23 H 0.061 0.939 24 H 0.037 0.963 25 H 0.091 0.909 26 H 0.076 0.924 27 H 0.159 0.841 28 H 0.153 0.847 29 H 0.131 0.869 30 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.075 4.357 -5.963 7.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.133 4.133 3 C -0.036 4.036 4 C -0.107 4.107 5 C -0.026 4.026 6 C -0.023 4.023 7 N -0.134 5.134 8 C -0.064 4.064 9 C -0.267 4.267 10 S 0.366 5.634 11 C -0.587 4.587 12 C 0.059 3.941 13 C -0.479 4.479 14 H 0.125 0.875 15 C -0.161 4.161 16 N -0.476 5.476 17 Si 0.780 3.220 18 H -0.199 1.199 19 H -0.215 1.215 20 H -0.179 1.179 21 C -0.072 4.072 22 H 0.086 0.914 23 H 0.080 0.920 24 H 0.056 0.944 25 H 0.109 0.891 26 H 0.094 0.906 27 H 0.177 0.823 28 H 0.171 0.829 29 H 0.149 0.851 30 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 2.813 6.235 -6.579 9.491 hybrid contribution -0.208 -1.603 1.090 1.949 sum 2.605 4.632 -5.490 7.641 Atomic orbital electron populations 1.21664 0.94527 1.01829 1.01382 1.20803 0.96609 0.91878 1.03974 1.19457 0.97118 0.96732 0.90313 1.20626 0.99138 0.92705 0.98279 1.15611 1.06791 0.94368 0.85806 1.25462 0.92242 0.92306 0.92241 1.81238 1.10744 1.09631 1.11750 1.20554 0.97915 0.99983 0.87921 1.22708 1.07328 0.97989 0.98642 1.81589 1.72539 1.15278 0.94034 1.24233 1.31895 1.00123 1.02450 1.17752 0.93329 0.94010 0.89043 1.19471 1.25253 0.99032 1.04136 0.87510 1.26532 0.97782 0.94387 0.97387 1.69741 1.37960 1.17048 1.22848 0.85640 0.80358 0.77212 0.78763 1.19949 1.21488 1.17906 1.19759 0.99773 0.93298 0.94355 0.91411 0.92039 0.94416 0.89062 0.90559 0.82345 0.82929 0.85127 0.89987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.18 9.04 71.98 0.65 -3.53 16 2 C -0.10 -3.03 5.33 29.85 0.16 -2.87 16 3 C -0.03 -1.14 5.14 -19.75 -0.10 -1.24 16 4 C -0.08 -2.23 9.27 22.20 0.21 -2.02 16 5 C -0.02 -0.52 5.73 -21.37 -0.12 -0.64 16 6 C 0.29 7.64 15.32 88.33 1.35 8.99 16 7 N -0.46 -13.40 18.54 19.00 0.35 -13.05 16 8 C -0.04 -1.07 9.78 22.79 0.22 -0.84 16 9 C -0.15 -5.36 6.43 22.89 0.15 -5.21 16 10 S 0.10 3.75 22.96 -56.49 -1.30 2.45 16 11 C -0.45 -20.33 8.04 67.42 0.54 -19.79 16 12 C 0.07 3.16 5.19 -20.88 -0.11 3.05 16 13 C -0.45 -22.03 7.78 23.27 0.18 -21.85 16 14 H 0.11 5.28 4.03 -2.91 -0.01 5.27 16 15 C 0.05 2.69 5.50 85.16 0.47 3.16 16 16 N -0.85 -43.58 13.94 21.80 0.30 -43.27 16 17 Si 0.95 42.08 24.62 68.60 1.69 43.77 16 18 H -0.27 -11.91 6.45 99.48 0.64 -11.27 16 19 H -0.29 -12.15 7.11 99.48 0.71 -11.44 16 20 H -0.26 -11.50 6.91 99.48 0.69 -10.81 16 21 C -0.06 -2.42 5.99 -20.17 -0.12 -2.54 16 22 H 0.07 1.73 8.14 -2.38 -0.02 1.71 16 23 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 24 H 0.04 1.37 6.90 -2.39 -0.02 1.36 16 25 H 0.09 2.28 8.04 -2.39 -0.02 2.26 16 26 H 0.08 2.96 5.45 -2.39 -0.01 2.95 16 27 H 0.16 3.20 8.05 -2.91 -0.02 3.18 16 28 H 0.15 3.46 8.06 -2.91 -0.02 3.44 16 29 H 0.13 6.12 4.68 -2.91 -0.01 6.11 16 30 H 0.29 13.72 8.30 -92.71 -0.77 12.96 16 Total: -1.00 -53.63 268.84 5.63 -48.00 By element: Atomic # 1 Polarization: 6.33 SS G_CDS: 1.11 Total: 7.44 kcal Atomic # 6 Polarization: -48.81 SS G_CDS: 3.48 Total: -45.34 kcal Atomic # 7 Polarization: -56.98 SS G_CDS: 0.66 Total: -56.32 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 1.69 Total: 43.77 kcal Atomic # 16 Polarization: 3.75 SS G_CDS: -1.30 Total: 2.45 kcal Total: -53.63 5.63 -48.00 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396217474.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.787 kcal (2) G-P(sol) polarization free energy of solvation -53.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.999 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds