Wall clock time and date at job start Mon Mar 30 2020 06:16:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.38879 * 119.93141 * 70.34284 * 3 2 1 5 5 C 1.38328 * 120.09502 * 180.02562 * 4 3 2 6 6 C 1.37635 * 120.32275 * 359.95412 * 5 4 3 7 7 C 1.40200 * 120.82070 * 0.02562 * 6 5 4 8 8 S 1.75896 * 129.53218 * 180.02562 * 7 6 5 9 9 C 1.75168 * 92.82629 * 179.79644 * 8 7 6 10 10 C 1.41117 * 124.67417 * 180.21784 * 9 8 7 11 11 O 1.21499 * 120.00347 * 174.08600 * 10 9 8 12 12 C 1.38977 * 110.65301 * 0.31525 * 9 8 7 13 13 C 1.39621 * 123.35754 * 179.89294 * 12 9 8 14 14 H 1.08005 * 119.99918 * 124.64615 * 13 12 9 15 15 C 1.40702 * 120.00263 * 304.37031 * 13 12 9 16 16 N 1.30431 * 120.00159 * 354.60805 * 15 13 12 17 17 Si 1.86796 * 120.00286 * 174.60460 * 15 13 12 18 18 H 1.48504 * 109.47400 * 90.00212 * 17 15 13 19 19 H 1.48502 * 109.47388 * 210.00021 * 17 15 13 20 20 H 1.48497 * 109.47063 * 330.00125 * 17 15 13 21 21 C 1.39244 * 119.65403 * 359.97438 * 7 6 5 22 22 H 1.08005 * 119.95272 * 359.97438 * 4 3 2 23 23 H 1.08005 * 119.83458 * 179.97438 * 5 4 3 24 24 H 1.08000 * 119.58883 * 180.02562 * 6 5 4 25 25 H 1.07996 * 120.00286 * 354.08623 * 10 9 8 26 26 H 0.97002 * 120.00295 * 185.00453 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2612 -0.4039 -1.1334 5 6 4.6445 -0.4051 -1.1370 6 6 5.3426 -0.0054 -0.0201 7 6 4.6693 0.4084 1.1379 8 16 5.3215 0.9593 2.6757 9 6 3.7287 1.2095 3.3604 10 6 3.4817 1.6841 4.6663 11 8 2.3451 1.9286 5.0189 12 6 2.7418 0.8742 2.4412 13 6 1.3755 0.9710 2.7120 14 1 0.7367 1.5538 2.0649 15 6 0.8299 0.3047 3.8247 16 7 1.5779 -0.4874 4.5419 17 14 -0.9657 0.5544 4.2748 18 1 -1.7970 -0.4574 3.5744 19 1 -1.1339 0.4028 5.7425 20 1 -1.3939 1.9161 3.8655 21 6 3.2770 0.4161 1.1597 22 1 2.7194 -0.7188 -2.0131 23 1 5.1793 -0.7210 -2.0206 24 1 6.4224 -0.0107 -0.0361 25 1 4.3030 1.8299 5.3522 26 1 1.1856 -1.0026 5.2642 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396217492.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:11 Heat of formation + Delta-G solvation = 17.749624 kcal Electronic energy + Delta-G solvation = -15976.468908 eV Core-core repulsion = 13304.012079 eV Total energy + Delta-G solvation = -2672.456829 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 257.025 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.54991 -39.21408 -37.27074 -36.29623 -34.35529 -32.14251 -30.56361 -28.77427 -25.68184 -24.20526 -22.95015 -21.03807 -19.94236 -18.45360 -17.77831 -16.97875 -16.49458 -16.32049 -15.97826 -15.20471 -15.04064 -14.68232 -14.53326 -14.18851 -13.99506 -13.75534 -13.63452 -13.38202 -13.10317 -13.06070 -12.49260 -12.28775 -11.90633 -11.56749 -11.32041 -11.08162 -10.15784 -9.98278 -9.18913 -8.85767 -8.34351 -6.56509 -0.44842 0.12153 1.03844 1.06115 1.21891 1.30261 1.39231 1.60339 1.87561 2.06804 2.10974 2.56018 2.86180 3.11893 3.16905 3.82161 4.15522 4.24971 4.32729 4.54763 4.78597 4.96387 5.02383 5.21080 5.39002 5.43098 5.47781 5.82388 5.95731 6.18743 6.55152 6.64243 6.69240 7.37558 8.18344 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.020086 B = 0.011207 C = 0.007567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.692621 B = 2497.844138 C = 3699.275156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.469 5.469 2 C 0.283 3.717 3 C -0.013 4.013 4 C -0.068 4.068 5 C -0.090 4.090 6 C -0.064 4.064 7 C -0.127 4.127 8 S 0.059 5.941 9 C -0.411 4.411 10 C 0.395 3.605 11 O -0.517 6.517 12 C 0.135 3.865 13 C -0.436 4.436 14 H 0.068 0.932 15 C 0.079 3.921 16 N -0.786 5.786 17 Si 0.955 3.045 18 H -0.264 1.264 19 H -0.265 1.265 20 H -0.267 1.267 21 C -0.074 4.074 22 H 0.165 0.835 23 H 0.188 0.812 24 H 0.163 0.837 25 H 0.075 0.925 26 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.611 -2.105 -9.557 13.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.145 5.145 2 C -0.031 4.031 3 C -0.019 4.019 4 C -0.092 4.092 5 C -0.110 4.110 6 C -0.088 4.088 7 C -0.243 4.243 8 S 0.321 5.679 9 C -0.527 4.527 10 C 0.263 3.737 11 O -0.401 6.401 12 C 0.125 3.875 13 C -0.467 4.467 14 H 0.086 0.914 15 C -0.142 4.142 16 N -0.411 5.411 17 Si 0.778 3.222 18 H -0.189 1.189 19 H -0.189 1.189 20 H -0.191 1.191 21 C -0.085 4.085 22 H 0.182 0.818 23 H 0.206 0.794 24 H 0.180 0.820 25 H 0.091 0.909 26 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 8.740 -1.832 -8.443 12.289 hybrid contribution -2.010 -0.055 0.514 2.076 sum 6.729 -1.887 -7.929 10.569 Atomic orbital electron populations 1.81045 1.13338 1.10320 1.09813 1.25886 0.93155 0.92493 0.91576 1.16176 0.83468 1.06717 0.95493 1.21378 0.95530 0.96773 0.95479 1.21378 0.92500 0.98217 0.98947 1.21239 1.01406 0.96358 0.89786 1.22866 0.95295 1.05950 1.00194 1.82579 1.07164 1.73822 1.04331 1.23352 0.95267 1.28424 1.05613 1.20957 0.90607 0.74776 0.87319 1.90393 1.27424 1.44486 1.77748 1.17921 0.93751 0.87394 0.88447 1.18998 0.92943 1.26436 1.08305 0.91357 1.26185 1.02867 0.92508 0.92631 1.69465 1.38878 1.18110 1.14697 0.85594 0.78483 0.79650 0.78513 1.18944 1.18940 1.19134 1.19839 0.93255 1.01295 0.94149 0.81767 0.79436 0.81993 0.90908 0.90168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -21.10 18.45 19.00 0.35 -20.75 15 2 C 0.28 11.77 12.91 88.33 1.14 12.91 15 3 C -0.01 -0.49 5.78 -20.91 -0.12 -0.61 15 4 C -0.07 -1.64 9.71 22.44 0.22 -1.42 15 5 C -0.09 -1.67 10.01 22.15 0.22 -1.45 15 6 C -0.06 -1.51 10.06 22.60 0.23 -1.28 15 7 C -0.13 -4.50 6.42 22.99 0.15 -4.36 15 8 S 0.06 2.23 23.11 -56.49 -1.31 0.93 15 9 C -0.41 -20.04 5.88 23.15 0.14 -19.91 15 10 C 0.40 19.78 10.63 68.53 0.73 20.50 15 11 O -0.52 -29.38 13.56 -3.71 -0.05 -29.43 15 12 C 0.14 6.96 5.21 -20.69 -0.11 6.85 15 13 C -0.44 -24.11 6.44 23.21 0.15 -23.96 15 14 H 0.07 3.89 7.23 -2.91 -0.02 3.87 15 15 C 0.08 4.29 3.50 85.50 0.30 4.59 15 16 N -0.79 -43.27 11.22 21.96 0.25 -43.03 15 17 Si 0.95 45.10 29.57 68.60 2.03 47.13 15 18 H -0.26 -12.04 7.11 99.48 0.71 -11.33 15 19 H -0.27 -11.99 7.11 99.48 0.71 -11.28 15 20 H -0.27 -12.80 7.11 99.48 0.71 -12.10 15 21 C -0.07 -3.15 5.99 -19.99 -0.12 -3.27 15 22 H 0.16 2.79 8.06 -2.91 -0.02 2.77 15 23 H 0.19 1.53 8.06 -2.91 -0.02 1.50 15 24 H 0.16 2.66 8.06 -2.91 -0.02 2.63 15 25 H 0.07 3.16 8.06 -2.91 -0.02 3.13 15 26 H 0.29 14.75 8.29 -92.71 -0.77 13.98 15 Total: -1.00 -68.80 257.50 5.43 -63.38 By element: Atomic # 1 Polarization: -8.06 SS G_CDS: 1.24 Total: -6.82 kcal Atomic # 6 Polarization: -14.32 SS G_CDS: 2.92 Total: -11.40 kcal Atomic # 7 Polarization: -64.38 SS G_CDS: 0.60 Total: -63.78 kcal Atomic # 8 Polarization: -29.38 SS G_CDS: -0.05 Total: -29.43 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Atomic # 16 Polarization: 2.23 SS G_CDS: -1.31 Total: 0.93 kcal Total: -68.80 5.43 -63.38 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396217492.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.129 kcal (2) G-P(sol) polarization free energy of solvation -68.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.379 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds