Wall clock time and date at job start Mon Mar 30 2020 06:16:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.37404 * 122.63630 * 340.13987 * 3 2 1 5 5 C 1.41842 * 124.87055 * 359.94233 * 4 3 2 6 6 O 1.21383 * 119.99815 * 180.02562 * 5 4 3 7 7 S 1.75432 * 110.25547 * 180.21183 * 4 3 2 8 8 C 1.76026 * 91.90390 * 359.69660 * 7 4 3 9 9 C 1.40037 * 130.06977 * 179.97438 * 8 7 4 10 10 C 1.37945 * 121.53993 * 180.31387 * 9 8 7 11 11 C 1.37737 * 121.11708 * 359.97438 * 10 9 8 12 12 C 1.40320 * 120.08787 * 0.02678 * 11 10 9 13 13 C 1.40453 * 120.37947 * 180.02562 * 12 11 10 14 14 H 1.07994 * 119.99996 * 149.12665 * 13 12 11 15 15 C 1.40273 * 119.99833 * 329.13073 * 13 12 11 16 16 N 1.30657 * 119.99876 * 349.27331 * 15 13 12 17 17 Si 1.86793 * 119.99733 * 169.27345 * 15 13 12 18 18 H 1.48503 * 109.47308 * 89.99865 * 17 15 13 19 19 H 1.48505 * 109.47214 * 209.99418 * 17 15 13 20 20 H 1.48497 * 109.47657 * 329.99911 * 17 15 13 21 21 C 1.39704 * 110.04469 * 0.30649 * 8 7 4 22 22 H 1.08001 * 119.99439 * 359.72663 * 5 4 3 23 23 H 1.08000 * 119.23572 * 0.30795 * 9 8 7 24 24 H 1.07993 * 119.44229 * 180.02562 * 10 9 8 25 25 H 1.07999 * 119.96013 * 180.02562 * 11 10 9 26 26 H 0.96998 * 119.99856 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3096 -1.0873 0.3931 5 6 2.7675 -2.3197 0.8394 6 8 3.5069 -3.2249 1.1669 7 16 5.0229 -0.7307 0.2710 8 6 4.7021 0.8948 -0.3235 9 6 5.5915 1.9124 -0.6900 10 6 5.1417 3.1390 -1.1328 11 6 3.7949 3.4098 -1.2320 12 6 2.8528 2.4314 -0.8796 13 6 1.4779 2.7009 -0.9788 14 1 0.7859 1.9022 -1.2014 15 6 1.0038 4.0073 -0.7889 16 7 1.8003 4.9292 -0.3169 17 14 -0.7664 4.4289 -1.2108 18 1 -1.6250 4.2097 -0.0191 19 1 -0.8507 5.8520 -1.6266 20 1 -1.2309 3.5601 -2.3220 21 6 3.3244 1.1127 -0.4019 22 1 1.6968 -2.4510 0.8924 23 1 6.6545 1.7329 -0.6244 24 1 5.8577 3.8995 -1.4072 25 1 3.4634 4.3765 -1.5814 26 1 1.4723 5.8325 -0.1853 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396217947.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:17 Heat of formation + Delta-G solvation = 17.565264 kcal Electronic energy + Delta-G solvation = -15564.787355 eV Core-core repulsion = 12892.322532 eV Total energy + Delta-G solvation = -2672.464824 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 257.025 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.52309 -39.67273 -37.77046 -36.36397 -35.28957 -31.88462 -30.80881 -27.72938 -26.50903 -24.27746 -22.52728 -21.98531 -19.79772 -18.71171 -17.93389 -17.31028 -17.01767 -16.22150 -15.76114 -15.53928 -15.39993 -14.76488 -14.71794 -14.53007 -14.12338 -13.83881 -13.63271 -13.39065 -13.11336 -13.00725 -12.35987 -12.22295 -11.80641 -11.60913 -11.42773 -11.30872 -10.95547 -10.17830 -9.31657 -8.98667 -8.66835 -6.52591 -1.04269 0.66471 0.77629 0.82153 1.06312 1.30167 1.38745 1.42902 1.50885 1.60585 2.04303 2.40971 2.52761 2.99325 3.39901 3.53690 4.06739 4.37236 4.43649 4.63867 4.83696 4.86472 4.94972 5.08512 5.21881 5.58500 5.72711 5.90312 5.99872 6.34702 6.37745 6.39341 6.48716 6.65868 7.93485 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.022252 B = 0.008586 C = 0.006309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.018140 B = 3260.335784 C = 4437.232923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.430 5.430 2 C 0.289 3.711 3 C 0.097 3.903 4 C -0.337 4.337 5 C 0.416 3.584 6 O -0.506 6.506 7 S 0.153 5.847 8 C -0.080 4.080 9 C -0.223 4.223 10 C -0.042 4.042 11 C -0.201 4.201 12 C 0.128 3.872 13 C -0.432 4.432 14 H 0.085 0.915 15 C 0.043 3.957 16 N -0.770 5.770 17 Si 0.969 3.031 18 H -0.266 1.266 19 H -0.248 1.248 20 H -0.260 1.260 21 C -0.196 4.196 22 H 0.125 0.875 23 H 0.128 0.872 24 H 0.135 0.865 25 H 0.118 0.882 26 H 0.305 0.695 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.029 -0.343 -1.150 2.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.107 5.107 2 C -0.027 4.027 3 C 0.078 3.922 4 C -0.456 4.456 5 C 0.280 3.720 6 O -0.385 6.385 7 S 0.422 5.578 8 C -0.196 4.196 9 C -0.250 4.250 10 C -0.063 4.063 11 C -0.223 4.223 12 C 0.122 3.878 13 C -0.459 4.459 14 H 0.103 0.897 15 C -0.180 4.180 16 N -0.392 5.392 17 Si 0.789 3.211 18 H -0.191 1.191 19 H -0.171 1.171 20 H -0.184 1.184 21 C -0.201 4.201 22 H 0.141 0.859 23 H 0.146 0.854 24 H 0.153 0.847 25 H 0.136 0.864 26 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 1.984 -1.523 -0.534 2.558 hybrid contribution -1.602 1.340 -0.401 2.127 sum 0.382 -0.183 -0.935 1.026 Atomic orbital electron populations 1.81108 1.11970 1.09093 1.08539 1.25144 0.92159 0.92055 0.93370 1.15299 0.84512 0.93444 0.98933 1.23882 0.98549 1.01032 1.22164 1.21974 0.95542 0.82866 0.71608 1.90515 1.65026 1.43102 1.39852 1.83548 1.01340 1.05776 1.67131 1.22802 0.95891 0.98572 1.02363 1.20043 0.97812 0.93321 1.13872 1.20935 0.95481 0.95474 0.94418 1.21135 0.92344 1.00404 1.08452 1.18786 0.93795 0.88706 0.86518 1.20159 0.93468 0.95411 1.36839 0.89714 1.26744 1.04421 0.94996 0.91838 1.69685 1.39101 1.04631 1.25786 0.85346 0.76236 0.79563 0.79956 1.19061 1.17149 1.18383 1.19021 0.91788 0.96403 1.12915 0.85909 0.85377 0.84698 0.86388 0.88355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -17.43 17.98 19.00 0.34 -17.09 15 2 C 0.29 11.52 11.95 88.33 1.06 12.57 15 3 C 0.10 3.87 5.73 -21.71 -0.12 3.75 15 4 C -0.34 -12.30 6.24 22.96 0.14 -12.16 15 5 C 0.42 13.80 10.99 68.71 0.76 14.55 15 6 O -0.51 -18.97 17.62 -3.35 -0.06 -19.03 15 7 S 0.15 5.41 22.92 -56.49 -1.29 4.11 15 8 C -0.08 -3.18 6.46 23.06 0.15 -3.03 15 9 C -0.22 -8.21 10.02 22.64 0.23 -7.98 15 10 C -0.04 -1.55 9.95 22.08 0.22 -1.33 15 11 C -0.20 -8.74 8.62 22.66 0.20 -8.55 15 12 C 0.13 5.93 5.71 -19.65 -0.11 5.82 15 13 C -0.43 -20.13 8.11 23.30 0.19 -19.94 15 14 H 0.08 3.97 5.45 -2.91 -0.02 3.96 15 15 C 0.04 1.84 5.24 85.36 0.45 2.29 15 16 N -0.77 -33.48 10.98 21.88 0.24 -33.23 15 17 Si 0.97 34.01 29.57 68.60 2.03 36.04 15 18 H -0.27 -9.48 7.11 99.48 0.71 -8.78 15 19 H -0.25 -7.86 7.11 99.48 0.71 -7.15 15 20 H -0.26 -9.32 7.11 99.48 0.71 -8.61 15 21 C -0.20 -8.52 6.02 -19.82 -0.12 -8.64 15 22 H 0.12 3.38 7.58 -2.91 -0.02 3.36 15 23 H 0.13 3.96 8.06 -2.91 -0.02 3.94 15 24 H 0.14 4.09 8.06 -2.91 -0.02 4.07 15 25 H 0.12 5.23 6.36 -2.91 -0.02 5.22 15 26 H 0.30 11.70 8.29 -92.71 -0.77 10.93 15 Total: -1.00 -50.47 259.23 5.53 -44.94 By element: Atomic # 1 Polarization: 5.67 SS G_CDS: 1.25 Total: 6.92 kcal Atomic # 6 Polarization: -25.67 SS G_CDS: 3.03 Total: -22.65 kcal Atomic # 7 Polarization: -50.91 SS G_CDS: 0.58 Total: -50.33 kcal Atomic # 8 Polarization: -18.97 SS G_CDS: -0.06 Total: -19.03 kcal Atomic # 14 Polarization: 34.01 SS G_CDS: 2.03 Total: 36.04 kcal Atomic # 16 Polarization: 5.41 SS G_CDS: -1.29 Total: 4.11 kcal Total: -50.47 5.53 -44.94 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396217947.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.500 kcal (2) G-P(sol) polarization free energy of solvation -50.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.935 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds