Wall clock time and date at job start Mon Mar 30 2020 06:47:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50696 * 109.47529 * 2 1 4 4 C 1.32112 * 122.55362 * 264.71183 * 3 2 1 5 5 S 1.75325 * 111.23449 * 179.86278 * 4 3 2 6 6 C 1.75901 * 92.13151 * 0.33814 * 5 4 3 7 7 C 1.39247 * 109.76165 * 359.81614 * 6 5 4 8 8 C 1.42781 * 118.75960 * 180.02562 * 7 6 5 9 9 C 1.43202 * 119.74060 * 179.97438 * 8 7 6 10 10 N 3.16603 * 81.27258 * 100.03575 * 2 1 3 11 11 C 1.39550 * 120.52040 * 359.95276 * 8 7 6 12 12 C 1.36217 * 120.73533 * 0.05139 * 11 8 7 13 13 C 1.40727 * 120.22689 * 359.97438 * 12 11 8 14 14 C 1.40522 * 119.95818 * 180.02562 * 13 12 11 15 15 H 1.08000 * 119.99880 * 149.86825 * 14 13 12 16 16 C 1.40221 * 119.99892 * 329.86961 * 14 13 12 17 17 N 1.30690 * 119.99573 * 161.79549 * 16 14 13 18 18 Si 1.86795 * 120.00286 * 341.79473 * 16 14 13 19 19 H 1.48497 * 109.47333 * 95.40818 * 18 16 14 20 20 H 1.48503 * 109.47194 * 215.40970 * 18 16 14 21 21 H 1.48500 * 109.47203 * 335.40635 * 18 16 14 22 22 H 1.09002 * 109.47447 * 179.97438 * 1 2 3 23 23 H 1.09008 * 109.46542 * 59.99952 * 1 2 3 24 24 H 1.08994 * 109.47320 * 300.00588 * 1 2 3 25 25 H 1.09010 * 109.46969 * 120.00354 * 2 1 3 26 26 H 1.09007 * 109.47436 * 239.99727 * 2 1 3 27 27 H 1.08000 * 124.38114 * 359.95724 * 4 3 2 28 28 H 1.07994 * 119.63418 * 180.02562 * 11 8 7 29 29 H 1.08000 * 119.88572 * 179.97438 * 12 11 8 30 30 H 0.96995 * 119.99518 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.3661 2.0567 -1.1088 5 16 2.9057 3.6894 -0.7665 6 6 2.6694 3.4751 0.9633 7 6 2.1920 2.1920 1.2179 8 6 1.9315 1.8115 2.5692 9 6 1.4396 0.4973 2.8549 10 7 1.0495 -0.5453 3.0815 11 6 2.1527 2.7101 3.6137 12 6 2.6196 3.9653 3.3650 13 6 2.8865 4.3734 2.0449 14 6 3.3685 5.6694 1.7948 15 1 4.0117 5.8520 0.9467 16 6 3.0144 6.7256 2.6465 17 7 3.7154 7.8285 2.6460 18 14 1.5406 6.5561 3.7817 19 1 1.9970 6.1087 5.1220 20 1 0.8567 7.8686 3.9043 21 1 0.5963 5.5565 3.2211 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3633 0.5139 -0.8901 24 1 -0.3633 0.5139 0.8899 25 1 1.8933 -0.5139 0.8900 26 1 1.8934 -0.5139 -0.8900 27 1 2.3120 1.6271 -2.0982 28 1 1.9512 2.4071 4.6305 29 1 2.7856 4.6498 4.1838 30 1 3.4702 8.5592 3.2349 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396218125.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:04 Heat of formation + Delta-G solvation = 47.843202 kcal Electronic energy + Delta-G solvation = -16060.458878 eV Core-core repulsion = 13525.140099 eV Total energy + Delta-G solvation = -2535.318779 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.057 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.90593 -36.05738 -35.52385 -33.89065 -31.45654 -30.91422 -28.50291 -26.17623 -23.78406 -22.41878 -21.44510 -19.22606 -18.60247 -17.45794 -15.77281 -15.23855 -14.99155 -14.66095 -13.87428 -13.62053 -13.31952 -13.24114 -13.12792 -12.54861 -12.24842 -12.10509 -11.93764 -11.76150 -11.45341 -11.31375 -11.12178 -10.90317 -10.48264 -10.37310 -10.18586 -9.98567 -9.73770 -9.52286 -8.48068 -7.75923 -7.46363 -7.01847 -4.92288 1.38666 2.07216 2.40801 2.83956 2.89725 2.95312 2.99024 3.09582 3.58971 3.61295 3.69580 4.39696 4.99990 5.06217 5.16610 5.34078 5.48710 5.69567 5.83339 5.89717 6.04918 6.16179 6.17870 6.30835 6.44121 6.52252 6.70929 6.79763 6.90250 6.99340 7.26466 7.42607 7.56952 7.81314 8.08002 8.23131 8.45553 9.51051 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.023248 B = 0.008616 C = 0.006782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.107393 B = 3249.172578 C = 4127.497689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.068 4.068 3 C -0.099 4.099 4 C -0.206 4.206 5 S 0.076 5.924 6 C -0.205 4.205 7 C 0.021 3.979 8 C -0.176 4.176 9 C 0.291 3.709 10 N -0.499 5.499 11 C 0.001 3.999 12 C -0.255 4.255 13 C 0.140 3.860 14 C -0.400 4.400 15 H 0.102 0.898 16 C 0.081 3.919 17 N -0.766 5.766 18 Si 0.916 3.084 19 H -0.261 1.261 20 H -0.284 1.284 21 H -0.235 1.235 22 H 0.051 0.949 23 H 0.052 0.948 24 H 0.055 0.945 25 H 0.072 0.928 26 H 0.065 0.935 27 H 0.154 0.846 28 H 0.107 0.893 29 H 0.114 0.886 30 H 0.297 0.703 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.470 -3.047 -3.073 4.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.108 4.108 3 C -0.113 4.113 4 C -0.340 4.340 5 S 0.342 5.658 6 C -0.321 4.321 7 C 0.010 3.990 8 C -0.185 4.185 9 C -0.018 4.018 10 N -0.178 5.178 11 C -0.021 4.021 12 C -0.278 4.278 13 C 0.133 3.867 14 C -0.426 4.426 15 H 0.120 0.880 16 C -0.144 4.144 17 N -0.386 5.386 18 Si 0.741 3.259 19 H -0.187 1.187 20 H -0.211 1.211 21 H -0.158 1.158 22 H 0.070 0.930 23 H 0.071 0.929 24 H 0.074 0.926 25 H 0.091 0.909 26 H 0.083 0.917 27 H 0.172 0.828 28 H 0.125 0.875 29 H 0.132 0.868 30 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -2.442 -3.135 -3.671 5.410 hybrid contribution -0.717 -0.506 1.248 1.526 sum -3.159 -3.641 -2.423 5.395 Atomic orbital electron populations 1.21676 0.95054 1.01012 1.02005 1.20322 0.95987 0.92155 1.02381 1.19632 1.03163 0.96903 0.91573 1.24872 1.08555 0.99307 1.01274 1.83716 1.70428 1.10754 1.00852 1.22394 1.15488 0.98453 0.95750 1.18525 0.97531 0.91765 0.91174 1.15069 1.22769 0.88819 0.91807 1.25837 0.91587 0.92590 0.91829 1.81092 1.14821 1.12401 1.09502 1.20083 0.93122 0.92671 0.96227 1.20368 1.15012 0.96950 0.95468 1.17102 0.88246 0.91939 0.89407 1.19778 1.22148 0.90963 1.09688 0.87985 1.26464 0.97927 0.94322 0.95714 1.69600 1.33722 1.04793 1.30465 0.86177 0.81156 0.78586 0.80018 1.18699 1.21137 1.15805 0.92999 0.92858 0.92558 0.90938 0.91669 0.82841 0.87506 0.86845 0.89220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.14 9.68 37.15 0.36 -1.78 16 2 C -0.07 -1.11 5.43 -27.89 -0.15 -1.26 16 3 C -0.10 -1.80 5.22 -103.86 -0.54 -2.34 16 4 C -0.21 -3.45 10.76 28.81 0.31 -3.14 16 5 S 0.08 1.43 22.90 -107.50 -2.46 -1.03 16 6 C -0.21 -4.44 6.36 -37.66 -0.24 -4.68 16 7 C 0.02 0.43 5.99 -105.07 -0.63 -0.20 16 8 C -0.18 -3.61 5.82 -105.73 -0.62 -4.22 16 9 C 0.29 5.81 11.52 -22.47 -0.26 5.55 16 10 N -0.50 -10.12 17.90 41.84 0.75 -9.37 16 11 C 0.00 0.01 9.61 -39.82 -0.38 -0.37 16 12 C -0.26 -5.41 7.06 -39.37 -0.28 -5.69 16 13 C 0.14 3.16 5.12 -106.55 -0.55 2.61 16 14 C -0.40 -9.38 9.30 -37.98 -0.35 -9.73 16 15 H 0.10 2.51 8.00 -52.49 -0.42 2.09 16 16 C 0.08 1.83 5.39 -17.29 -0.09 1.74 16 17 N -0.77 -17.51 13.92 55.56 0.77 -16.74 16 18 Si 0.92 18.00 24.51 -169.99 -4.17 13.83 16 19 H -0.26 -4.91 6.71 56.52 0.38 -4.53 16 20 H -0.28 -5.40 7.11 56.52 0.40 -5.00 16 21 H -0.24 -4.81 6.87 56.52 0.39 -4.42 16 22 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 23 H 0.05 0.74 8.14 -51.92 -0.42 0.32 16 24 H 0.06 0.96 7.26 -51.93 -0.38 0.59 16 25 H 0.07 1.29 5.54 -51.92 -0.29 1.00 16 26 H 0.06 0.91 8.09 -51.93 -0.42 0.49 16 27 H 0.15 2.08 8.06 -52.49 -0.42 1.66 16 28 H 0.11 1.84 8.06 -52.49 -0.42 1.41 16 29 H 0.11 2.31 4.72 -52.49 -0.25 2.07 16 30 H 0.30 6.04 8.29 -40.82 -0.34 5.70 16 LS Contribution 271.51 15.07 4.09 4.09 Total: -1.00 -24.01 271.51 -7.05 -31.06 By element: Atomic # 1 Polarization: 4.29 SS G_CDS: -2.61 Total: 1.67 kcal Atomic # 6 Polarization: -20.09 SS G_CDS: -3.42 Total: -23.51 kcal Atomic # 7 Polarization: -27.63 SS G_CDS: 1.52 Total: -26.11 kcal Atomic # 14 Polarization: 18.00 SS G_CDS: -4.17 Total: 13.83 kcal Atomic # 16 Polarization: 1.43 SS G_CDS: -2.46 Total: -1.03 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -24.01 -7.05 -31.06 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396218125.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.904 kcal (2) G-P(sol) polarization free energy of solvation -24.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.061 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds