Wall clock time and date at job start Mon Mar 30 2020 06:47:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50696 * 109.47529 * 2 1 4 4 C 1.32112 * 122.55362 * 264.71183 * 3 2 1 5 5 S 1.75325 * 111.23449 * 179.86278 * 4 3 2 6 6 C 1.75901 * 92.13151 * 0.33814 * 5 4 3 7 7 C 1.39247 * 109.76165 * 359.81614 * 6 5 4 8 8 C 1.42781 * 118.75960 * 180.02562 * 7 6 5 9 9 C 1.43202 * 119.74060 * 179.97438 * 8 7 6 10 10 N 3.16603 * 81.27258 * 100.03575 * 2 1 3 11 11 C 1.39550 * 120.52040 * 359.95276 * 8 7 6 12 12 C 1.36217 * 120.73533 * 0.05139 * 11 8 7 13 13 C 1.40727 * 120.22689 * 359.97438 * 12 11 8 14 14 C 1.40522 * 119.95818 * 180.02562 * 13 12 11 15 15 H 1.08000 * 119.99880 * 149.86825 * 14 13 12 16 16 C 1.40221 * 119.99892 * 329.86961 * 14 13 12 17 17 N 1.30690 * 119.99573 * 161.79549 * 16 14 13 18 18 Si 1.86795 * 120.00286 * 341.79473 * 16 14 13 19 19 H 1.48497 * 109.47333 * 95.40818 * 18 16 14 20 20 H 1.48503 * 109.47194 * 215.40970 * 18 16 14 21 21 H 1.48500 * 109.47203 * 335.40635 * 18 16 14 22 22 H 1.09002 * 109.47447 * 179.97438 * 1 2 3 23 23 H 1.09008 * 109.46542 * 59.99952 * 1 2 3 24 24 H 1.08994 * 109.47320 * 300.00588 * 1 2 3 25 25 H 1.09010 * 109.46969 * 120.00354 * 2 1 3 26 26 H 1.09007 * 109.47436 * 239.99727 * 2 1 3 27 27 H 1.08000 * 124.38114 * 359.95724 * 4 3 2 28 28 H 1.07994 * 119.63418 * 180.02562 * 11 8 7 29 29 H 1.08000 * 119.88572 * 179.97438 * 12 11 8 30 30 H 0.96995 * 119.99518 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.3661 2.0567 -1.1088 5 16 2.9057 3.6894 -0.7665 6 6 2.6694 3.4751 0.9633 7 6 2.1920 2.1920 1.2179 8 6 1.9315 1.8115 2.5692 9 6 1.4396 0.4973 2.8549 10 7 1.0495 -0.5453 3.0815 11 6 2.1527 2.7101 3.6137 12 6 2.6196 3.9653 3.3650 13 6 2.8865 4.3734 2.0449 14 6 3.3685 5.6694 1.7948 15 1 4.0117 5.8520 0.9467 16 6 3.0144 6.7256 2.6465 17 7 3.7154 7.8285 2.6460 18 14 1.5406 6.5561 3.7817 19 1 1.9970 6.1087 5.1220 20 1 0.8567 7.8686 3.9043 21 1 0.5963 5.5565 3.2211 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3633 0.5139 -0.8901 24 1 -0.3633 0.5139 0.8899 25 1 1.8933 -0.5139 0.8900 26 1 1.8934 -0.5139 -0.8900 27 1 2.3120 1.6271 -2.0982 28 1 1.9512 2.4071 4.6305 29 1 2.7856 4.6498 4.1838 30 1 3.4702 8.5592 3.2349 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396218125.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:04 Heat of formation + Delta-G solvation = 37.222317 kcal Electronic energy + Delta-G solvation = -16060.919434 eV Core-core repulsion = 13525.140099 eV Total energy + Delta-G solvation = -2535.779335 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.057 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.46926 -37.60233 -37.08863 -35.52445 -32.82975 -32.56430 -30.00035 -27.82882 -25.12729 -23.97101 -23.02459 -20.72954 -20.18842 -19.04658 -17.41711 -16.76923 -16.49008 -16.14315 -15.33670 -15.16168 -14.81728 -14.76338 -14.62751 -14.02489 -13.79469 -13.60459 -13.48139 -13.28961 -12.87443 -12.80982 -12.62189 -12.46503 -11.92419 -11.84510 -11.65448 -11.54002 -11.26753 -11.10587 -10.08153 -9.32128 -9.13293 -8.56612 -6.65010 -0.16702 0.46049 0.94101 1.26594 1.38978 1.40809 1.44298 1.54988 1.97779 1.99196 2.11107 2.73670 3.34642 3.43074 3.78379 4.02868 4.21762 4.32206 4.46981 4.51655 4.61764 4.73586 4.89213 4.94261 5.00015 5.16165 5.23960 5.27192 5.39254 5.45277 5.64185 5.79632 5.92651 6.10795 6.40230 6.52465 6.83712 7.90338 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.023248 B = 0.008616 C = 0.006782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.107393 B = 3249.172578 C = 4127.497689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.064 4.064 3 C -0.115 4.115 4 C -0.181 4.181 5 S 0.072 5.928 6 C -0.236 4.236 7 C 0.010 3.990 8 C -0.175 4.175 9 C 0.300 3.700 10 N -0.499 5.499 11 C 0.001 3.999 12 C -0.265 4.265 13 C 0.132 3.868 14 C -0.432 4.432 15 H 0.075 0.925 16 C 0.057 3.943 17 N -0.801 5.801 18 Si 0.959 3.041 19 H -0.244 1.244 20 H -0.273 1.273 21 H -0.249 1.249 22 H 0.065 0.935 23 H 0.067 0.933 24 H 0.031 0.969 25 H 0.054 0.946 26 H 0.094 0.906 27 H 0.194 0.806 28 H 0.136 0.864 29 H 0.120 0.880 30 H 0.306 0.694 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.546 -4.765 -3.320 6.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.104 4.104 3 C -0.129 4.129 4 C -0.315 4.315 5 S 0.337 5.663 6 C -0.352 4.352 7 C -0.001 4.001 8 C -0.184 4.184 9 C -0.010 4.010 10 N -0.178 5.178 11 C -0.021 4.021 12 C -0.287 4.287 13 C 0.125 3.875 14 C -0.459 4.459 15 H 0.093 0.907 16 C -0.166 4.166 17 N -0.423 5.423 18 Si 0.780 3.220 19 H -0.169 1.169 20 H -0.200 1.200 21 H -0.173 1.173 22 H 0.084 0.916 23 H 0.086 0.914 24 H 0.050 0.950 25 H 0.073 0.927 26 H 0.113 0.887 27 H 0.211 0.789 28 H 0.154 0.846 29 H 0.138 0.862 30 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -3.509 -4.856 -3.913 7.155 hybrid contribution -0.391 -0.152 1.231 1.301 sum -3.900 -5.007 -2.681 6.890 Atomic orbital electron populations 1.21650 0.94424 1.01784 1.01516 1.20338 0.96434 0.90678 1.02949 1.19816 1.04191 0.98008 0.90861 1.25276 1.05967 0.97590 1.02697 1.83736 1.70658 1.12639 0.99220 1.22684 1.16361 0.98983 0.97150 1.18925 0.96990 0.91886 0.92328 1.15301 1.21859 0.89052 0.92162 1.25646 0.91417 0.92320 0.91637 1.81098 1.14639 1.12358 1.09727 1.20385 0.92101 0.91953 0.97624 1.20517 1.15308 0.97720 0.95170 1.17302 0.87883 0.91785 0.90492 1.19681 1.23970 0.92194 1.10035 0.90694 1.26998 0.99341 0.93804 0.96429 1.69602 1.35074 1.05647 1.31937 0.85551 0.78505 0.78615 0.79300 1.16894 1.19960 1.17279 0.91602 0.91397 0.94975 0.92693 0.88749 0.78863 0.84584 0.86209 0.88222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.76 9.68 71.98 0.70 -3.06 16 2 C -0.06 -1.88 5.43 29.84 0.16 -1.71 16 3 C -0.12 -3.93 5.22 -19.10 -0.10 -4.03 16 4 C -0.18 -5.55 10.76 66.85 0.72 -4.83 16 5 S 0.07 2.64 22.90 -56.49 -1.29 1.34 16 6 C -0.24 -10.23 6.36 23.51 0.15 -10.08 16 7 C 0.01 0.39 5.99 -20.16 -0.12 0.27 16 8 C -0.18 -6.94 5.82 -20.58 -0.12 -7.06 16 9 C 0.30 11.39 11.52 88.33 1.02 12.41 16 10 N -0.50 -19.19 17.90 19.01 0.34 -18.85 16 11 C 0.00 0.03 9.61 22.12 0.21 0.24 16 12 C -0.26 -11.09 7.06 22.41 0.16 -10.93 16 13 C 0.13 6.04 5.12 -21.11 -0.11 5.93 16 14 C -0.43 -21.05 9.30 23.31 0.22 -20.84 16 15 H 0.07 3.93 8.00 -2.91 -0.02 3.90 16 16 C 0.06 2.60 5.39 85.34 0.46 3.06 16 17 N -0.80 -37.60 13.92 21.87 0.30 -37.30 16 18 Si 0.96 36.65 24.51 68.60 1.68 38.33 16 19 H -0.24 -8.60 6.71 99.48 0.67 -7.93 16 20 H -0.27 -9.85 7.11 99.48 0.71 -9.14 16 21 H -0.25 -10.00 6.87 99.48 0.68 -9.31 16 22 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 23 H 0.07 1.66 8.14 -2.38 -0.02 1.64 16 24 H 0.03 1.02 7.26 -2.39 -0.02 1.01 16 25 H 0.05 1.81 5.54 -2.38 -0.01 1.80 16 26 H 0.09 2.21 8.09 -2.38 -0.02 2.19 16 27 H 0.19 4.31 8.06 -2.91 -0.02 4.29 16 28 H 0.14 4.33 8.06 -2.91 -0.02 4.30 16 29 H 0.12 4.79 4.72 -2.91 -0.01 4.77 16 30 H 0.31 12.68 8.29 -92.71 -0.77 11.92 16 Total: -1.00 -51.56 271.51 5.49 -46.07 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: 1.12 Total: 11.03 kcal Atomic # 6 Polarization: -43.97 SS G_CDS: 3.35 Total: -40.62 kcal Atomic # 7 Polarization: -56.79 SS G_CDS: 0.64 Total: -56.15 kcal Atomic # 14 Polarization: 36.65 SS G_CDS: 1.68 Total: 38.33 kcal Atomic # 16 Polarization: 2.64 SS G_CDS: -1.29 Total: 1.34 kcal Total: -51.56 5.49 -46.07 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396218125.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.288 kcal (2) G-P(sol) polarization free energy of solvation -51.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.066 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds