Wall clock time and date at job start Mon Mar 30 2020 06:42:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50700 * 109.46827 * 2 1 4 4 C 1.41031 * 119.60300 * 90.00313 * 3 2 1 5 5 C 1.45557 * 129.02742 * 359.97438 * 4 3 2 6 6 C 1.31788 * 114.89833 * 180.24285 * 5 4 3 7 7 S 1.75290 * 111.38034 * 359.63341 * 6 5 4 8 8 C 1.39567 * 119.16987 * 179.97438 * 4 3 2 9 9 C 1.42343 * 119.91832 * 0.02562 * 8 4 3 10 10 C 1.41006 * 120.01092 * 179.97438 * 9 8 4 11 11 H 1.07995 * 119.99775 * 329.97640 * 10 9 8 12 12 C 1.39901 * 119.99861 * 149.97042 * 10 9 8 13 13 N 1.30878 * 119.99827 * 161.73513 * 12 10 9 14 14 Si 1.86803 * 120.00174 * 341.74004 * 12 10 9 15 15 H 1.48499 * 109.47345 * 95.40684 * 14 12 10 16 16 H 1.48507 * 109.46894 * 215.40165 * 14 12 10 17 17 H 1.48491 * 109.47066 * 335.40329 * 14 12 10 18 18 C 1.40026 * 119.98499 * 359.97438 * 9 8 4 19 19 C 1.39180 * 119.60813 * 269.99715 * 3 2 1 20 20 C 1.43202 * 119.79264 * 0.02864 * 19 3 2 21 21 N 3.53381 * 94.78770 * 283.75093 * 2 1 3 22 22 H 1.09005 * 109.47565 * 59.99423 * 1 2 3 23 23 H 1.09005 * 109.47175 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47057 * 299.99644 * 1 2 3 25 25 H 1.08998 * 109.47057 * 240.00356 * 2 1 3 26 26 H 1.08998 * 109.47120 * 119.99810 * 2 1 3 27 27 H 1.07998 * 122.55150 * 359.97438 * 5 4 3 28 28 H 1.07997 * 124.31195 * 179.74774 * 6 5 4 29 29 H 0.97002 * 119.99961 * 180.02562 * 13 12 10 30 30 H 1.07992 * 120.13550 * 179.97438 * 18 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 6 2.2645 2.0777 1.2262 5 6 2.0873 1.5777 2.5817 6 6 2.3864 2.4383 3.5340 7 16 2.9322 3.9649 2.8674 8 6 2.7301 3.3933 1.2157 9 6 2.9636 4.0539 -0.0234 10 6 3.4335 5.3833 -0.0363 11 1 3.1748 6.0553 0.7685 12 6 4.2350 5.8316 -1.0917 13 7 4.3776 7.1149 -1.3057 14 14 5.1017 4.5986 -2.1955 15 1 4.2772 4.3526 -3.4058 16 1 6.4243 5.1399 -2.5993 17 1 5.2926 3.3235 -1.4589 18 6 2.7264 3.3833 -1.2295 19 6 2.2615 2.0691 -1.2101 20 6 2.0180 1.3821 -2.4427 21 7 1.8249 0.8371 -3.4205 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.7334 0.5791 2.7912 28 1 2.3071 2.2290 4.5905 29 1 4.9330 7.4257 -2.0377 30 1 2.9023 3.8822 -2.1710 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396218217.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:22 Heat of formation + Delta-G solvation = 47.815495 kcal Electronic energy + Delta-G solvation = -16079.844084 eV Core-core repulsion = 13544.524103 eV Total energy + Delta-G solvation = -2535.319981 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.057 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.99158 -36.16015 -35.02932 -33.92020 -32.85806 -29.98607 -28.63766 -25.64907 -23.49285 -22.79461 -21.17519 -20.41829 -17.72671 -16.85419 -16.48291 -15.65038 -14.99112 -14.51086 -13.77046 -13.52434 -13.38811 -13.12222 -12.96768 -12.76777 -12.54192 -12.06923 -11.87840 -11.81732 -11.57949 -11.37149 -11.06561 -10.95749 -10.65327 -10.37573 -10.05137 -9.94960 -9.73366 -9.38408 -8.53218 -7.72929 -7.24182 -7.05323 -4.74662 1.53094 1.65364 2.37007 2.83148 2.88908 3.02988 3.05377 3.19460 3.24046 3.61023 3.77871 4.30921 4.59579 4.98812 5.31848 5.41430 5.42410 5.75615 5.79097 5.94822 6.03803 6.14693 6.22520 6.29961 6.46214 6.55113 6.64780 6.77315 6.87156 7.01593 7.18931 7.36754 7.56923 7.96497 8.07578 8.16896 8.42878 9.75898 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.015866 B = 0.011364 C = 0.007042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1764.355458 B = 2463.325365 C = 3975.175846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.068 4.068 3 C -0.133 4.133 4 C -0.034 4.034 5 C -0.121 4.121 6 C -0.212 4.212 7 S 0.076 5.924 8 C -0.176 4.176 9 C 0.124 3.876 10 C -0.427 4.427 11 H 0.100 0.900 12 C 0.087 3.913 13 N -0.785 5.785 14 Si 0.902 3.098 15 H -0.265 1.265 16 H -0.284 1.284 17 H -0.237 1.237 18 C -0.207 4.207 19 C 0.021 3.979 20 C 0.277 3.723 21 N -0.458 5.458 22 H 0.050 0.950 23 H 0.047 0.953 24 H 0.056 0.944 25 H 0.055 0.945 26 H 0.065 0.935 27 H 0.131 0.869 28 H 0.154 0.846 29 H 0.292 0.708 30 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.810 -6.619 6.014 9.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.106 4.106 3 C -0.140 4.140 4 C -0.042 4.042 5 C -0.153 4.153 6 C -0.346 4.346 7 S 0.340 5.660 8 C -0.292 4.292 9 C 0.118 3.882 10 C -0.454 4.454 11 H 0.118 0.882 12 C -0.136 4.136 13 N -0.407 5.407 14 Si 0.727 3.273 15 H -0.191 1.191 16 H -0.210 1.210 17 H -0.160 1.160 18 C -0.233 4.233 19 C 0.016 3.984 20 C -0.037 4.037 21 N -0.134 5.134 22 H 0.069 0.931 23 H 0.066 0.934 24 H 0.075 0.925 25 H 0.074 0.926 26 H 0.084 0.916 27 H 0.149 0.851 28 H 0.172 0.828 29 H 0.102 0.898 30 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -1.524 -5.821 5.138 7.912 hybrid contribution 0.015 -1.321 -0.807 1.547 sum -1.510 -7.141 4.331 8.488 Atomic orbital electron populations 1.21755 0.95756 1.00496 1.02070 1.20269 0.95427 0.93461 1.01454 1.18766 1.10083 0.95669 0.89451 1.18614 1.00897 0.92746 0.91972 1.20830 1.03616 1.00070 0.90817 1.24979 1.08315 0.98858 1.02485 1.83878 1.70345 1.14009 0.97731 1.22813 1.13207 0.96867 0.96360 1.16828 0.91042 0.92448 0.87885 1.19485 1.25016 0.94315 1.06591 0.88222 1.26195 0.95261 0.95978 0.96142 1.69682 1.29088 1.15533 1.26377 0.86407 0.78303 0.82231 0.80388 1.19129 1.21040 1.16015 1.20734 1.11128 0.93909 0.97502 1.15430 1.04240 0.93313 0.85374 1.26125 0.92461 0.92234 0.92869 1.81097 1.10588 1.10234 1.11512 0.93100 0.93428 0.92456 0.92591 0.91598 0.85107 0.82837 0.89760 0.86705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 9.89 37.16 0.37 -1.67 16 2 C -0.07 -1.07 5.45 -27.88 -0.15 -1.23 16 3 C -0.13 -2.53 5.25 -103.21 -0.54 -3.07 16 4 C -0.03 -0.66 5.96 -105.43 -0.63 -1.29 16 5 C -0.12 -1.94 9.78 -38.56 -0.38 -2.32 16 6 C -0.21 -3.24 11.02 28.84 0.32 -2.92 16 7 S 0.08 1.39 22.89 -107.50 -2.46 -1.07 16 8 C -0.18 -3.74 6.37 -37.51 -0.24 -3.98 16 9 C 0.12 2.87 5.12 -106.60 -0.55 2.32 16 10 C -0.43 -10.44 9.30 -37.91 -0.35 -10.80 16 11 H 0.10 2.55 8.00 -52.49 -0.42 2.13 16 12 C 0.09 2.08 5.39 -17.34 -0.09 1.99 16 13 N -0.79 -19.21 13.93 55.55 0.77 -18.44 16 14 Si 0.90 19.36 24.52 -169.99 -4.17 15.20 16 15 H -0.27 -5.66 6.71 56.52 0.38 -5.28 16 16 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 17 H -0.24 -5.19 6.87 56.52 0.39 -4.80 16 18 C -0.21 -4.62 6.84 -38.48 -0.26 -4.88 16 19 C 0.02 0.44 5.71 -107.18 -0.61 -0.17 16 20 C 0.28 5.60 13.67 -22.47 -0.31 5.29 16 21 N -0.46 -9.43 18.54 41.84 0.78 -8.66 16 22 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 23 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.06 0.90 7.02 -51.93 -0.36 0.53 16 26 H 0.07 0.92 7.21 -51.93 -0.37 0.54 16 27 H 0.13 1.73 7.50 -52.49 -0.39 1.34 16 28 H 0.15 1.82 8.06 -52.49 -0.42 1.39 16 29 H 0.29 6.45 8.30 -40.82 -0.34 6.11 16 30 H 0.12 2.59 4.73 -52.49 -0.25 2.34 16 LS Contribution 275.54 15.07 4.15 4.15 Total: -1.00 -24.81 275.54 -7.01 -31.83 By element: Atomic # 1 Polarization: 2.38 SS G_CDS: -2.66 Total: -0.28 kcal Atomic # 6 Polarization: -19.30 SS G_CDS: -3.43 Total: -22.72 kcal Atomic # 7 Polarization: -28.64 SS G_CDS: 1.55 Total: -27.09 kcal Atomic # 14 Polarization: 19.36 SS G_CDS: -4.17 Total: 15.20 kcal Atomic # 16 Polarization: 1.39 SS G_CDS: -2.46 Total: -1.07 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -24.81 -7.01 -31.83 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396218217.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.642 kcal (2) G-P(sol) polarization free energy of solvation -24.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.827 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds