Wall clock time and date at job start Mon Mar 30 2020 06:42:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50700 * 109.46827 * 2 1 4 4 C 1.41031 * 119.60300 * 90.00313 * 3 2 1 5 5 C 1.45557 * 129.02742 * 359.97438 * 4 3 2 6 6 C 1.31788 * 114.89833 * 180.24285 * 5 4 3 7 7 S 1.75290 * 111.38034 * 359.63341 * 6 5 4 8 8 C 1.39567 * 119.16987 * 179.97438 * 4 3 2 9 9 C 1.42343 * 119.91832 * 0.02562 * 8 4 3 10 10 C 1.41006 * 120.01092 * 179.97438 * 9 8 4 11 11 H 1.07995 * 119.99775 * 329.97640 * 10 9 8 12 12 C 1.39901 * 119.99861 * 149.97042 * 10 9 8 13 13 N 1.30878 * 119.99827 * 161.73513 * 12 10 9 14 14 Si 1.86803 * 120.00174 * 341.74004 * 12 10 9 15 15 H 1.48499 * 109.47345 * 95.40684 * 14 12 10 16 16 H 1.48507 * 109.46894 * 215.40165 * 14 12 10 17 17 H 1.48491 * 109.47066 * 335.40329 * 14 12 10 18 18 C 1.40026 * 119.98499 * 359.97438 * 9 8 4 19 19 C 1.39180 * 119.60813 * 269.99715 * 3 2 1 20 20 C 1.43202 * 119.79264 * 0.02864 * 19 3 2 21 21 N 3.53381 * 94.78770 * 283.75093 * 2 1 3 22 22 H 1.09005 * 109.47565 * 59.99423 * 1 2 3 23 23 H 1.09005 * 109.47175 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47057 * 299.99644 * 1 2 3 25 25 H 1.08998 * 109.47057 * 240.00356 * 2 1 3 26 26 H 1.08998 * 109.47120 * 119.99810 * 2 1 3 27 27 H 1.07998 * 122.55150 * 359.97438 * 5 4 3 28 28 H 1.07997 * 124.31195 * 179.74774 * 6 5 4 29 29 H 0.97002 * 119.99961 * 180.02562 * 13 12 10 30 30 H 1.07992 * 120.13550 * 179.97438 * 18 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 6 2.2645 2.0777 1.2262 5 6 2.0873 1.5777 2.5817 6 6 2.3864 2.4383 3.5340 7 16 2.9322 3.9649 2.8674 8 6 2.7301 3.3933 1.2157 9 6 2.9636 4.0539 -0.0234 10 6 3.4335 5.3833 -0.0363 11 1 3.1748 6.0553 0.7685 12 6 4.2350 5.8316 -1.0917 13 7 4.3776 7.1149 -1.3057 14 14 5.1017 4.5986 -2.1955 15 1 4.2772 4.3526 -3.4058 16 1 6.4243 5.1399 -2.5993 17 1 5.2926 3.3235 -1.4589 18 6 2.7264 3.3833 -1.2295 19 6 2.2615 2.0691 -1.2101 20 6 2.0180 1.3821 -2.4427 21 7 1.8249 0.8371 -3.4205 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.7334 0.5791 2.7912 28 1 2.3071 2.2290 4.5905 29 1 4.9330 7.4257 -2.0377 30 1 2.9023 3.8822 -2.1710 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396218217.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:21 Heat of formation + Delta-G solvation = 36.121808 kcal Electronic energy + Delta-G solvation = -16080.351160 eV Core-core repulsion = 13544.524103 eV Total energy + Delta-G solvation = -2535.827057 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.057 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.56930 -37.74914 -36.63073 -35.37391 -34.44592 -31.53839 -30.12115 -27.22293 -25.09939 -24.23247 -22.54602 -21.95587 -19.36221 -18.51312 -18.00469 -17.12521 -16.65952 -16.03596 -15.27453 -15.02770 -14.87778 -14.64883 -14.41031 -14.22796 -14.10911 -13.69459 -13.37849 -13.15588 -13.10774 -12.91078 -12.66352 -12.49626 -11.98304 -11.86583 -11.59923 -11.55611 -11.20872 -11.06940 -10.10007 -9.27605 -9.01388 -8.59404 -6.54123 -0.08183 0.15261 0.94254 1.16025 1.27687 1.38637 1.45507 1.55113 1.61277 2.02940 2.03915 2.61145 2.97607 3.27808 3.97641 4.03891 4.16827 4.43298 4.47851 4.58789 4.73845 4.82978 4.93442 5.02983 5.08082 5.13432 5.24108 5.29678 5.42890 5.50793 5.59096 5.77304 5.96963 6.14046 6.43004 6.44589 6.65558 8.05293 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.015866 B = 0.011364 C = 0.007042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1764.355458 B = 2463.325365 C = 3975.175846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.071 4.071 3 C -0.103 4.103 4 C -0.045 4.045 5 C -0.123 4.123 6 C -0.187 4.187 7 S 0.056 5.944 8 C -0.198 4.198 9 C 0.111 3.889 10 C -0.461 4.461 11 H 0.072 0.928 12 C 0.061 3.939 13 N -0.828 5.828 14 Si 0.942 3.058 15 H -0.267 1.267 16 H -0.271 1.271 17 H -0.245 1.245 18 C -0.221 4.221 19 C 0.003 3.997 20 C 0.285 3.715 21 N -0.464 5.464 22 H 0.032 0.968 23 H 0.074 0.926 24 H 0.063 0.937 25 H 0.053 0.947 26 H 0.096 0.904 27 H 0.173 0.827 28 H 0.199 0.801 29 H 0.298 0.702 30 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.684 -10.051 7.824 13.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.108 4.108 3 C -0.109 4.109 4 C -0.054 4.054 5 C -0.153 4.153 6 C -0.321 4.321 7 S 0.320 5.680 8 C -0.314 4.314 9 C 0.105 3.895 10 C -0.489 4.489 11 H 0.091 0.909 12 C -0.157 4.157 13 N -0.452 5.452 14 Si 0.766 3.234 15 H -0.193 1.193 16 H -0.197 1.197 17 H -0.169 1.169 18 C -0.247 4.247 19 C -0.002 4.002 20 C -0.028 4.028 21 N -0.141 5.141 22 H 0.051 0.949 23 H 0.093 0.907 24 H 0.082 0.918 25 H 0.072 0.928 26 H 0.114 0.886 27 H 0.190 0.810 28 H 0.216 0.784 29 H 0.109 0.891 30 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -2.401 -9.262 6.951 11.827 hybrid contribution 0.139 -0.493 -1.176 1.283 sum -2.262 -9.756 5.775 11.560 Atomic orbital electron populations 1.21720 0.94205 1.02217 1.01572 1.20421 0.96603 0.90915 1.02876 1.19343 1.05835 0.97049 0.88700 1.19112 1.00332 0.92007 0.93911 1.21088 1.03636 1.01954 0.88614 1.25432 1.05943 0.96169 1.04543 1.84034 1.70756 1.16780 0.96400 1.23179 1.12923 0.98088 0.97207 1.16916 0.91260 0.92145 0.89153 1.19362 1.27687 0.95085 1.06807 0.90950 1.26634 0.95426 0.96861 0.96819 1.69703 1.31176 1.16408 1.27945 0.85793 0.78081 0.80471 0.79059 1.19302 1.19731 1.16860 1.20712 1.12114 0.94887 0.96992 1.15518 1.05301 0.93003 0.86387 1.25976 0.92210 0.91994 0.92666 1.81101 1.10972 1.10608 1.11395 0.94876 0.90667 0.91751 0.92792 0.88603 0.80968 0.78390 0.89149 0.87770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.36 9.89 71.98 0.71 -2.65 16 2 C -0.07 -1.91 5.45 29.85 0.16 -1.74 16 3 C -0.10 -3.63 5.25 -18.95 -0.10 -3.73 16 4 C -0.04 -1.59 5.96 -20.39 -0.12 -1.72 16 5 C -0.12 -3.28 9.78 23.40 0.23 -3.05 16 6 C -0.19 -4.82 11.02 67.06 0.74 -4.08 16 7 S 0.06 1.99 22.89 -56.49 -1.29 0.70 16 8 C -0.20 -8.29 6.37 23.61 0.15 -8.14 16 9 C 0.11 5.27 5.12 -21.15 -0.11 5.16 16 10 C -0.46 -23.90 9.30 23.35 0.22 -23.68 16 11 H 0.07 4.01 8.00 -2.91 -0.02 3.98 16 12 C 0.06 3.06 5.39 85.24 0.46 3.52 16 13 N -0.83 -42.88 13.93 21.82 0.30 -42.57 16 14 Si 0.94 41.23 24.52 68.60 1.68 42.91 16 15 H -0.27 -11.56 6.71 99.48 0.67 -10.90 16 16 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 17 H -0.25 -10.85 6.87 99.48 0.68 -10.17 16 18 C -0.22 -10.08 6.84 22.99 0.16 -9.92 16 19 C 0.00 0.12 5.71 -21.52 -0.12 0.00 16 20 C 0.29 11.22 13.67 88.33 1.21 12.43 16 21 N -0.46 -18.54 18.54 19.00 0.35 -18.18 16 22 H 0.03 0.91 8.14 -2.38 -0.02 0.89 16 23 H 0.07 1.43 8.14 -2.38 -0.02 1.42 16 24 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 25 H 0.05 1.52 7.02 -2.39 -0.02 1.50 16 26 H 0.10 2.08 7.21 -2.39 -0.02 2.06 16 27 H 0.17 3.26 7.50 -2.91 -0.02 3.24 16 28 H 0.20 3.38 8.06 -2.91 -0.02 3.35 16 29 H 0.30 13.89 8.30 -92.71 -0.77 13.13 16 30 H 0.10 4.87 4.73 -2.91 -0.01 4.86 16 Total: -1.00 -56.10 275.54 5.74 -50.35 By element: Atomic # 1 Polarization: 3.29 SS G_CDS: 1.11 Total: 4.41 kcal Atomic # 6 Polarization: -41.19 SS G_CDS: 3.58 Total: -37.61 kcal Atomic # 7 Polarization: -61.41 SS G_CDS: 0.66 Total: -60.76 kcal Atomic # 14 Polarization: 41.23 SS G_CDS: 1.68 Total: 42.91 kcal Atomic # 16 Polarization: 1.99 SS G_CDS: -1.29 Total: 0.70 kcal Total: -56.10 5.74 -50.35 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396218217.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.475 kcal (2) G-P(sol) polarization free energy of solvation -56.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.353 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds