Wall clock time and date at job start Mon Mar 30 2020 06:42:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.50706 * 109.47189 * 2 1 4 4 C 1.31943 * 124.35229 * 89.72256 * 3 2 1 5 5 C 1.45435 * 114.97157 * 179.84585 * 4 3 2 6 6 C 1.41639 * 128.61399 * 180.18890 * 5 4 3 7 7 C 1.36934 * 121.88518 * 180.28670 * 6 5 4 8 8 C 1.39815 * 120.59498 * 359.95356 * 7 6 5 9 9 C 1.43196 * 120.55512 * 180.02562 * 8 7 6 10 10 N 8.89528 * 109.40186 * 355.59517 * 2 1 3 11 11 C 1.46275 * 118.88839 * 0.03885 * 8 7 6 12 12 C 1.40261 * 120.45209 * 180.02562 * 11 8 7 13 13 H 1.08004 * 119.99973 * 321.45768 * 12 11 8 14 14 C 1.40301 * 120.00130 * 141.45319 * 12 11 8 15 15 N 1.30652 * 119.99831 * 338.24790 * 14 12 11 16 16 Si 1.86801 * 120.00053 * 158.24099 * 14 12 11 17 17 H 1.48503 * 109.46730 * 60.00836 * 16 14 12 18 18 H 1.48498 * 109.47109 * 180.02562 * 16 14 12 19 19 H 1.48491 * 109.47498 * 300.00698 * 16 14 12 20 20 C 1.39425 * 111.73118 * 0.43273 * 5 4 3 21 21 S 1.75298 * 124.34611 * 270.02552 * 3 2 1 22 22 H 1.09004 * 109.46928 * 300.00253 * 1 2 3 23 23 H 1.09003 * 109.47599 * 60.00044 * 1 2 3 24 24 H 1.08994 * 109.47203 * 180.02562 * 1 2 3 25 25 H 1.08994 * 109.47723 * 119.99766 * 2 1 3 26 26 H 1.08998 * 109.47213 * 240.00402 * 2 1 3 27 27 H 1.08006 * 122.51562 * 0.02562 * 4 3 2 28 28 H 1.07996 * 119.05734 * 0.25548 * 6 5 4 29 29 H 1.08009 * 119.70046 * 179.97438 * 7 6 5 30 30 H 0.96999 * 119.99525 * 185.41337 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2755 2.1246 1.0893 5 6 2.7582 3.4758 0.8523 6 6 3.1090 4.4681 1.8001 7 6 3.5466 5.7088 1.4202 8 6 3.6632 6.0385 0.0665 9 6 4.1214 7.3360 -0.3299 10 7 4.4849 8.3654 -0.6444 11 6 3.3089 5.0361 -0.9381 12 6 3.4139 5.3316 -2.3052 13 1 3.1426 6.3120 -2.6681 14 6 3.8714 4.3537 -3.2012 15 7 4.5856 3.3506 -2.7646 16 14 3.4594 4.4860 -5.0184 17 1 4.0103 5.7544 -5.5598 18 1 4.0552 3.3367 -5.7460 19 1 1.9850 4.4718 -5.1940 20 6 2.8572 3.7572 -0.5097 21 16 2.3614 2.3535 -1.4473 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 1.8933 -0.5137 0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 2.1299 1.7260 2.0825 28 1 3.0286 4.2399 2.8526 29 1 3.8044 6.4391 2.1731 30 1 4.9678 2.7178 -3.3926 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396218710.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:41 Heat of formation + Delta-G solvation = 42.516238 kcal Electronic energy + Delta-G solvation = -15874.006356 eV Core-core repulsion = 13338.456582 eV Total energy + Delta-G solvation = -2535.549774 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.057 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.11363 -35.96702 -34.87608 -33.95369 -31.96747 -30.17107 -27.87572 -25.79401 -23.89019 -22.14849 -21.13120 -19.41049 -17.99024 -17.25129 -15.68583 -15.29428 -14.66460 -14.39809 -13.72220 -13.52812 -12.99362 -12.89860 -12.82229 -12.58115 -12.03291 -11.95287 -11.67096 -11.51924 -11.39307 -11.24289 -11.05989 -10.93709 -10.73968 -10.37103 -10.09461 -9.83605 -9.59648 -9.12496 -8.38220 -7.33109 -7.27753 -6.45330 -4.82819 1.56700 2.54871 2.63411 2.82206 2.90671 2.94014 3.13705 3.28451 3.68396 3.96235 4.16339 4.36655 5.09040 5.21871 5.31033 5.42130 5.53432 5.70824 5.98127 6.00660 6.04539 6.11545 6.27496 6.35295 6.55096 6.65361 6.78609 6.95480 7.04012 7.28194 7.39817 7.64301 7.78646 8.02465 8.26665 8.40576 8.83188 9.70201 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.016364 B = 0.010472 C = 0.006753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1710.665057 B = 2673.061818 C = 4145.391847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.050 4.050 3 C -0.191 4.191 4 C -0.139 4.139 5 C -0.025 4.025 6 C -0.214 4.214 7 C -0.023 4.023 8 C -0.182 4.182 9 C 0.305 3.695 10 N -0.509 5.509 11 C 0.195 3.805 12 C -0.448 4.448 13 H 0.094 0.906 14 C 0.073 3.927 15 N -0.741 5.741 16 Si 0.905 3.095 17 H -0.260 1.260 18 H -0.270 1.270 19 H -0.254 1.254 20 C -0.170 4.170 21 S 0.120 5.880 22 H 0.056 0.944 23 H 0.057 0.943 24 H 0.053 0.947 25 H 0.071 0.929 26 H 0.068 0.932 27 H 0.122 0.878 28 H 0.101 0.899 29 H 0.104 0.896 30 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.200 -8.548 2.043 10.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.089 4.089 3 C -0.308 4.308 4 C -0.171 4.171 5 C -0.034 4.034 6 C -0.235 4.235 7 C -0.045 4.045 8 C -0.192 4.192 9 C -0.005 4.005 10 N -0.188 5.188 11 C 0.187 3.813 12 C -0.475 4.475 13 H 0.112 0.888 14 C -0.152 4.152 15 N -0.363 5.363 16 Si 0.727 3.273 17 H -0.184 1.184 18 H -0.195 1.195 19 H -0.178 1.178 20 C -0.286 4.286 21 S 0.388 5.612 22 H 0.075 0.925 23 H 0.076 0.924 24 H 0.072 0.928 25 H 0.090 0.910 26 H 0.087 0.913 27 H 0.140 0.860 28 H 0.119 0.881 29 H 0.122 0.878 30 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -4.681 -7.601 -0.076 8.927 hybrid contribution 0.055 -0.105 0.889 0.897 sum -4.626 -7.707 0.813 9.025 Atomic orbital electron populations 1.21769 0.94977 1.01117 1.02474 1.20024 0.95651 0.90898 1.02329 1.24232 1.07107 1.00244 0.99192 1.20718 1.04775 0.93552 0.98017 1.19073 0.98838 0.92853 0.92598 1.19870 1.13441 0.93605 0.96605 1.20223 0.95744 0.95331 0.93243 1.16648 1.20016 0.89819 0.92693 1.25583 0.91306 0.92075 0.91496 1.81018 1.14912 1.13353 1.09547 1.17598 0.85238 0.86703 0.91747 1.19565 1.37087 0.99548 0.91270 0.88829 1.26049 0.93446 0.93153 1.02573 1.69637 1.18016 1.09612 1.38993 0.86327 0.80932 0.79545 0.80448 1.18416 1.19482 1.17825 1.22456 1.12568 0.99208 0.94413 1.83751 1.66193 1.05083 1.06182 0.92495 0.92435 0.92758 0.91007 0.91345 0.85982 0.88108 0.87822 0.89190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 9.89 37.15 0.37 -1.37 16 2 C -0.05 -0.68 6.37 -27.88 -0.18 -0.86 16 3 C -0.19 -3.42 5.64 -36.22 -0.20 -3.62 16 4 C -0.14 -2.58 10.21 -38.63 -0.39 -2.97 16 5 C -0.02 -0.53 6.03 -105.29 -0.63 -1.16 16 6 C -0.21 -4.31 10.01 -38.76 -0.39 -4.69 16 7 C -0.02 -0.48 9.70 -39.46 -0.38 -0.86 16 8 C -0.18 -4.27 5.95 -104.16 -0.62 -4.88 16 9 C 0.31 7.26 14.47 -22.47 -0.33 6.94 16 10 N -0.51 -12.42 18.54 41.84 0.78 -11.64 16 11 C 0.20 4.82 5.54 -104.37 -0.58 4.24 16 12 C -0.45 -11.05 8.23 -38.05 -0.31 -11.36 16 13 H 0.09 2.32 7.74 -52.48 -0.41 1.92 16 14 C 0.07 1.67 4.24 -17.28 -0.07 1.60 16 15 N -0.74 -17.23 10.72 55.57 0.60 -16.64 16 16 Si 0.90 17.50 29.62 -169.99 -5.03 12.46 16 17 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 18 H -0.27 -4.98 7.11 56.52 0.40 -4.58 16 19 H -0.25 -4.86 7.11 56.52 0.40 -4.46 16 20 C -0.17 -3.97 5.76 -37.61 -0.22 -4.19 16 21 S 0.12 2.50 19.84 -107.50 -2.13 0.36 16 22 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 23 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 24 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 25 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 26 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.12 1.94 8.06 -52.48 -0.42 1.52 16 28 H 0.10 1.75 8.06 -52.49 -0.42 1.32 16 29 H 0.10 1.85 8.06 -52.48 -0.42 1.43 16 30 H 0.30 6.25 8.30 -40.82 -0.34 5.91 16 LS Contribution 282.98 15.07 4.26 4.26 Total: -1.00 -26.03 282.98 -8.39 -34.42 By element: Atomic # 1 Polarization: 2.89 SS G_CDS: -2.92 Total: -0.03 kcal Atomic # 6 Polarization: -19.26 SS G_CDS: -3.94 Total: -23.20 kcal Atomic # 7 Polarization: -29.65 SS G_CDS: 1.37 Total: -28.28 kcal Atomic # 14 Polarization: 17.50 SS G_CDS: -5.03 Total: 12.46 kcal Atomic # 16 Polarization: 2.50 SS G_CDS: -2.13 Total: 0.36 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -26.03 -8.39 -34.42 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396218710.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.940 kcal (2) G-P(sol) polarization free energy of solvation -26.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.423 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds