Wall clock time and date at job start Mon Mar 30 2020 06:42:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.50706 * 109.47189 * 2 1 4 4 C 1.31943 * 124.35229 * 89.72256 * 3 2 1 5 5 C 1.45435 * 114.97157 * 179.84585 * 4 3 2 6 6 C 1.41639 * 128.61399 * 180.18890 * 5 4 3 7 7 C 1.36934 * 121.88518 * 180.28670 * 6 5 4 8 8 C 1.39815 * 120.59498 * 359.95356 * 7 6 5 9 9 C 1.43196 * 120.55512 * 180.02562 * 8 7 6 10 10 N 8.89528 * 109.40186 * 355.59517 * 2 1 3 11 11 C 1.46275 * 118.88839 * 0.03885 * 8 7 6 12 12 C 1.40261 * 120.45209 * 180.02562 * 11 8 7 13 13 H 1.08004 * 119.99973 * 321.45768 * 12 11 8 14 14 C 1.40301 * 120.00130 * 141.45319 * 12 11 8 15 15 N 1.30652 * 119.99831 * 338.24790 * 14 12 11 16 16 Si 1.86801 * 120.00053 * 158.24099 * 14 12 11 17 17 H 1.48503 * 109.46730 * 60.00836 * 16 14 12 18 18 H 1.48498 * 109.47109 * 180.02562 * 16 14 12 19 19 H 1.48491 * 109.47498 * 300.00698 * 16 14 12 20 20 C 1.39425 * 111.73118 * 0.43273 * 5 4 3 21 21 S 1.75298 * 124.34611 * 270.02552 * 3 2 1 22 22 H 1.09004 * 109.46928 * 300.00253 * 1 2 3 23 23 H 1.09003 * 109.47599 * 60.00044 * 1 2 3 24 24 H 1.08994 * 109.47203 * 180.02562 * 1 2 3 25 25 H 1.08994 * 109.47723 * 119.99766 * 2 1 3 26 26 H 1.08998 * 109.47213 * 240.00402 * 2 1 3 27 27 H 1.08006 * 122.51562 * 0.02562 * 4 3 2 28 28 H 1.07996 * 119.05734 * 0.25548 * 6 5 4 29 29 H 1.08009 * 119.70046 * 179.97438 * 7 6 5 30 30 H 0.96999 * 119.99525 * 185.41337 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2755 2.1246 1.0893 5 6 2.7582 3.4758 0.8523 6 6 3.1090 4.4681 1.8001 7 6 3.5466 5.7088 1.4202 8 6 3.6632 6.0385 0.0665 9 6 4.1214 7.3360 -0.3299 10 7 4.4849 8.3654 -0.6444 11 6 3.3089 5.0361 -0.9381 12 6 3.4139 5.3316 -2.3052 13 1 3.1426 6.3120 -2.6681 14 6 3.8714 4.3537 -3.2012 15 7 4.5856 3.3506 -2.7646 16 14 3.4594 4.4860 -5.0184 17 1 4.0103 5.7544 -5.5598 18 1 4.0552 3.3367 -5.7460 19 1 1.9850 4.4718 -5.1940 20 6 2.8572 3.7572 -0.5097 21 16 2.3614 2.3535 -1.4473 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 1.8933 -0.5137 0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 2.1299 1.7260 2.0825 28 1 3.0286 4.2399 2.8526 29 1 3.8044 6.4391 2.1731 30 1 4.9678 2.7178 -3.3926 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396218710.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:41 Heat of formation + Delta-G solvation = 31.487313 kcal Electronic energy + Delta-G solvation = -15874.484606 eV Core-core repulsion = 13338.456582 eV Total energy + Delta-G solvation = -2536.028024 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.057 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.74351 -37.57784 -36.59826 -35.55426 -33.34314 -31.88072 -29.34804 -27.51692 -25.22412 -23.67909 -22.72098 -20.87419 -19.66208 -18.95513 -17.30568 -16.85827 -16.17329 -15.94829 -15.02006 -14.94449 -14.59846 -14.58570 -14.29654 -14.09625 -13.65952 -13.48387 -13.37464 -13.13633 -12.96279 -12.79556 -12.38014 -12.32628 -12.15729 -11.78355 -11.61497 -11.44813 -11.18204 -10.73575 -10.03694 -9.00035 -8.94757 -8.09608 -6.62727 -0.07669 0.89703 1.09796 1.27631 1.31973 1.41088 1.53677 1.69862 2.08509 2.09520 2.43352 2.59617 3.46208 3.62755 3.84947 4.30730 4.38921 4.52190 4.55062 4.67916 4.79264 4.93772 5.03682 5.04229 5.12199 5.26007 5.36138 5.42102 5.46964 5.62548 5.75434 5.99313 6.09686 6.28106 6.52287 6.65023 6.96677 8.02587 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.016364 B = 0.010472 C = 0.006753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1710.665057 B = 2673.061818 C = 4145.391847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.050 4.050 3 C -0.173 4.173 4 C -0.149 4.149 5 C -0.036 4.036 6 C -0.206 4.206 7 C -0.025 4.025 8 C -0.208 4.208 9 C 0.310 3.690 10 N -0.530 5.530 11 C 0.173 3.827 12 C -0.482 4.482 13 H 0.076 0.924 14 C 0.048 3.952 15 N -0.762 5.762 16 Si 0.956 3.044 17 H -0.266 1.266 18 H -0.251 1.251 19 H -0.252 1.252 20 C -0.203 4.203 21 S 0.093 5.907 22 H 0.057 0.943 23 H 0.044 0.956 24 H 0.081 0.919 25 H 0.096 0.904 26 H 0.073 0.927 27 H 0.157 0.843 28 H 0.137 0.863 29 H 0.132 0.868 30 H 0.304 0.696 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.983 -10.762 3.217 12.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.089 4.089 3 C -0.290 4.290 4 C -0.180 4.180 5 C -0.046 4.046 6 C -0.227 4.227 7 C -0.047 4.047 8 C -0.218 4.218 9 C 0.002 3.998 10 N -0.210 5.210 11 C 0.165 3.835 12 C -0.509 4.509 13 H 0.094 0.906 14 C -0.176 4.176 15 N -0.385 5.385 16 Si 0.776 3.224 17 H -0.191 1.191 18 H -0.175 1.175 19 H -0.176 1.176 20 C -0.319 4.319 21 S 0.360 5.640 22 H 0.076 0.924 23 H 0.063 0.937 24 H 0.100 0.900 25 H 0.115 0.885 26 H 0.092 0.908 27 H 0.174 0.826 28 H 0.155 0.845 29 H 0.150 0.850 30 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -5.461 -9.818 1.117 11.290 hybrid contribution 0.265 0.504 0.653 0.866 sum -5.196 -9.314 1.769 10.811 Atomic orbital electron populations 1.21750 0.93481 1.02819 1.01932 1.20209 0.96804 0.88124 1.03801 1.24702 1.05325 1.01725 0.97219 1.20970 1.04928 0.92272 0.99828 1.19629 0.98226 0.94541 0.92161 1.20321 1.11344 0.92807 0.98226 1.20547 0.95186 0.96384 0.92611 1.16958 1.21264 0.89506 0.94041 1.25808 0.90876 0.92161 0.90999 1.80989 1.15979 1.13986 1.10089 1.17922 0.85542 0.87968 0.92117 1.19615 1.39400 0.99617 0.92295 0.90595 1.26569 0.92823 0.92598 1.05578 1.69643 1.18354 1.10110 1.40343 0.85583 0.80760 0.79707 0.76336 1.19108 1.17454 1.17623 1.22688 1.13754 0.99602 0.95891 1.83679 1.66646 1.05252 1.08422 0.92381 0.93687 0.89972 0.88539 0.90809 0.82555 0.84528 0.84993 0.88413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.91 9.89 71.98 0.71 -2.20 16 2 C -0.05 -1.20 6.37 29.85 0.19 -1.01 16 3 C -0.17 -5.77 5.64 24.82 0.14 -5.63 16 4 C -0.15 -5.12 10.21 23.26 0.24 -4.89 16 5 C -0.04 -1.49 6.03 -20.30 -0.12 -1.62 16 6 C -0.21 -7.84 10.01 22.80 0.23 -7.61 16 7 C -0.03 -1.02 9.70 22.35 0.22 -0.80 16 8 C -0.21 -9.92 5.95 -19.56 -0.12 -10.03 16 9 C 0.31 15.16 14.47 88.33 1.28 16.44 16 10 N -0.53 -26.49 18.54 19.00 0.35 -26.14 16 11 C 0.17 8.76 5.54 -19.70 -0.11 8.65 16 12 C -0.48 -24.81 8.23 23.26 0.19 -24.62 16 13 H 0.08 4.01 7.74 -2.91 -0.02 3.99 16 14 C 0.05 2.23 4.24 85.37 0.36 2.59 16 15 N -0.76 -35.99 10.72 21.89 0.23 -35.76 16 16 Si 0.96 36.27 29.62 68.60 2.03 38.30 16 17 H -0.27 -10.28 7.11 99.48 0.71 -9.58 16 18 H -0.25 -8.65 7.11 99.48 0.71 -7.95 16 19 H -0.25 -9.39 7.11 99.48 0.71 -8.68 16 20 C -0.20 -9.54 5.76 23.55 0.14 -9.40 16 21 S 0.09 3.83 19.84 -56.49 -1.12 2.71 16 22 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 23 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 24 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 25 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 26 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 27 H 0.16 4.25 8.06 -2.91 -0.02 4.23 16 28 H 0.14 4.17 8.06 -2.91 -0.02 4.15 16 29 H 0.13 4.45 8.06 -2.91 -0.02 4.42 16 30 H 0.30 12.90 8.30 -92.71 -0.77 12.13 16 Total: -1.00 -57.34 282.98 6.00 -51.34 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: 1.16 Total: 9.66 kcal Atomic # 6 Polarization: -43.47 SS G_CDS: 3.34 Total: -40.12 kcal Atomic # 7 Polarization: -62.48 SS G_CDS: 0.59 Total: -61.89 kcal Atomic # 14 Polarization: 36.27 SS G_CDS: 2.03 Total: 38.30 kcal Atomic # 16 Polarization: 3.83 SS G_CDS: -1.12 Total: 2.71 kcal Total: -57.34 6.00 -51.34 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396218710.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.825 kcal (2) G-P(sol) polarization free energy of solvation -57.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.338 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds