Wall clock time and date at job start Mon Mar 30 2020 06:44:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.50704 * 109.46824 * 2 1 4 4 C 1.37663 * 119.92277 * 265.01711 * 3 2 1 5 5 C 1.38081 * 121.14924 * 180.02562 * 4 3 2 6 6 C 1.39753 * 121.50732 * 0.02562 * 5 4 3 7 7 S 1.76052 * 130.36643 * 179.97438 * 6 5 4 8 8 C 1.75507 * 91.62641 * 179.41313 * 7 6 5 9 9 C 1.43202 * 124.81917 * 179.97438 * 8 7 6 10 10 N 8.62663 * 105.38665 * 25.60781 * 2 1 3 11 11 C 1.35573 * 110.35404 * 0.44346 * 8 7 6 12 12 C 1.39266 * 115.36112 * 359.51332 * 11 8 7 13 13 C 1.40317 * 119.92987 * 84.99855 * 3 2 1 14 14 C 1.40392 * 120.40801 * 359.97438 * 13 3 2 15 15 H 1.08000 * 119.99969 * 322.06113 * 14 13 3 16 16 C 1.40159 * 120.00204 * 142.06237 * 14 13 3 17 17 N 1.30730 * 119.99844 * 334.80129 * 16 14 13 18 18 Si 1.86796 * 119.99990 * 154.80279 * 16 14 13 19 19 H 1.48506 * 109.47175 * 270.00017 * 18 16 14 20 20 H 1.48501 * 109.47436 * 29.99682 * 18 16 14 21 21 H 1.48498 * 109.47014 * 150.00135 * 18 16 14 22 22 H 1.08992 * 109.46928 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.46783 * 300.00619 * 1 2 3 24 24 H 1.09001 * 109.46399 * 60.00170 * 1 2 3 25 25 H 1.08994 * 109.46956 * 239.99865 * 2 1 3 26 26 H 1.08996 * 109.46583 * 119.99366 * 2 1 3 27 27 H 1.07998 * 119.43192 * 0.02639 * 4 3 2 28 28 H 1.08001 * 119.24895 * 179.97438 * 5 4 3 29 29 H 1.08003 * 122.31659 * 179.53905 * 11 8 7 30 30 H 0.97005 * 120.00106 * 353.00711 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.3590 2.0338 -1.1886 5 6 2.8220 3.3343 -1.2180 6 6 2.9786 4.0805 -0.0468 7 16 3.5423 5.7319 0.1863 8 6 3.3219 5.6151 1.9236 9 6 3.6005 6.6660 2.8556 10 7 3.8190 7.5004 3.5949 11 6 2.8602 4.3853 2.2586 12 6 2.6566 3.5135 1.1919 13 6 2.1658 2.1163 1.2114 14 6 1.8334 1.4969 2.4267 15 1 0.9818 0.8348 2.4802 16 6 2.6068 1.7376 3.5705 17 7 3.8571 2.1000 3.4498 18 14 1.8511 1.5406 5.2674 19 1 1.2594 2.8325 5.6988 20 1 0.7907 0.5020 5.2195 21 1 2.9023 1.1306 6.2328 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3632 0.5138 -0.8900 25 1 1.8934 -0.5138 -0.8899 26 1 1.8933 -0.5137 0.8900 27 1 2.2512 1.4880 -2.1143 28 1 3.0695 3.7850 -2.1678 29 1 2.6635 4.1014 3.2820 30 1 4.2786 2.1043 2.5762 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396218759.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:14 Heat of formation + Delta-G solvation = 42.505378 kcal Electronic energy + Delta-G solvation = -16100.898843 eV Core-core repulsion = 13565.348598 eV Total energy + Delta-G solvation = -2535.550245 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.057 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.69868 -36.26742 -34.84230 -34.33500 -32.16698 -29.39510 -28.21742 -25.62058 -23.63739 -22.84092 -20.99998 -19.43874 -18.78532 -17.16063 -15.85907 -14.98938 -14.79885 -14.31709 -13.96605 -13.60421 -13.30617 -13.00876 -12.79832 -12.49000 -12.36667 -12.13938 -11.92521 -11.63846 -11.45084 -11.17016 -10.85152 -10.64573 -10.42739 -10.35680 -10.12195 -9.87614 -9.50543 -9.21624 -8.50533 -7.73999 -7.50242 -6.88293 -4.81609 1.19325 2.05873 2.38005 2.66715 2.93714 2.98324 3.04824 3.15347 3.58615 3.72543 3.94716 4.19768 4.70611 4.93171 5.65118 5.67197 5.88678 5.95767 6.07436 6.11934 6.35303 6.41053 6.56971 6.59051 6.70324 6.74169 6.83977 6.94427 7.24583 7.30635 7.42352 7.52321 7.63165 7.83169 8.08188 8.23817 8.38309 9.60821 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.015074 B = 0.011139 C = 0.006812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1857.050834 B = 2513.116322 C = 4109.224484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.056 4.056 3 C -0.205 4.205 4 C -0.031 4.031 5 C -0.233 4.233 6 C -0.050 4.050 7 S 0.066 5.934 8 C -0.228 4.228 9 C 0.307 3.693 10 N -0.459 5.459 11 C 0.033 3.967 12 C -0.194 4.194 13 C 0.147 3.853 14 C -0.478 4.478 15 H 0.096 0.904 16 C 0.035 3.965 17 N -0.757 5.757 18 Si 1.057 2.943 19 H -0.268 1.268 20 H -0.270 1.270 21 H -0.271 1.271 22 H 0.041 0.959 23 H 0.056 0.944 24 H 0.045 0.955 25 H 0.047 0.953 26 H 0.067 0.933 27 H 0.101 0.899 28 H 0.098 0.902 29 H 0.141 0.859 30 H 0.305 0.695 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.341 -3.547 -3.884 6.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.093 4.093 3 C -0.209 4.209 4 C -0.052 4.052 5 C -0.259 4.259 6 C -0.166 4.166 7 S 0.329 5.671 8 C -0.346 4.346 9 C -0.007 4.007 10 N -0.138 5.138 11 C -0.001 4.001 12 C -0.200 4.200 13 C 0.142 3.858 14 C -0.504 4.504 15 H 0.114 0.886 16 C -0.192 4.192 17 N -0.377 5.377 18 Si 0.879 3.121 19 H -0.194 1.194 20 H -0.195 1.195 21 H -0.196 1.196 22 H 0.060 0.940 23 H 0.075 0.925 24 H 0.064 0.936 25 H 0.066 0.934 26 H 0.085 0.915 27 H 0.119 0.881 28 H 0.116 0.884 29 H 0.159 0.841 30 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -2.083 -0.802 -2.007 3.002 hybrid contribution -0.739 -1.466 -1.134 1.995 sum -2.822 -2.268 -3.141 4.793 Atomic orbital electron populations 1.21750 0.96662 0.99926 1.01707 1.20094 0.94619 0.93690 1.00931 1.19522 1.12606 0.96028 0.92711 1.20359 0.95155 0.93309 0.96383 1.19539 1.16204 0.95827 0.94318 1.22530 1.01306 0.95196 0.97594 1.83470 1.72276 1.12165 0.99162 1.19047 1.25446 0.95710 0.94410 1.24512 0.91976 0.91882 0.92283 1.81148 1.12641 1.10644 1.09374 1.20434 0.90110 0.89138 1.00375 1.18872 1.15381 0.95389 0.90325 1.18295 0.87156 0.87641 0.92758 1.20753 1.12280 1.23551 0.93820 0.88629 1.27242 0.94399 0.91594 1.05945 1.70400 1.10993 1.24470 1.31851 0.83717 0.76553 0.78727 0.73066 1.19366 1.19452 1.19584 0.93978 0.92455 0.93588 0.93394 0.91455 0.88109 0.88358 0.84124 0.88166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.21 9.82 37.16 0.36 -1.85 16 2 C -0.06 -0.97 5.44 -27.88 -0.15 -1.12 16 3 C -0.20 -4.12 5.18 -104.05 -0.54 -4.66 16 4 C -0.03 -0.58 9.58 -39.85 -0.38 -0.96 16 5 C -0.23 -4.58 10.02 -39.07 -0.39 -4.97 16 6 C -0.05 -1.06 6.48 -38.36 -0.25 -1.30 16 7 S 0.07 1.28 23.23 -107.50 -2.50 -1.22 16 8 C -0.23 -4.79 6.24 -38.61 -0.24 -5.04 16 9 C 0.31 6.45 15.78 -22.47 -0.35 6.10 16 10 N -0.46 -9.89 18.54 41.84 0.78 -9.11 16 11 C 0.03 0.73 8.21 -40.15 -0.33 0.40 16 12 C -0.19 -4.35 5.09 -104.82 -0.53 -4.88 16 13 C 0.15 3.26 5.10 -104.26 -0.53 2.73 16 14 C -0.48 -10.38 7.63 -38.05 -0.29 -10.67 16 15 H 0.10 1.99 6.45 -52.49 -0.34 1.65 16 16 C 0.03 0.74 3.61 -17.30 -0.06 0.68 16 17 N -0.76 -17.46 11.60 55.56 0.64 -16.81 16 18 Si 1.06 18.84 30.00 -169.99 -5.10 13.74 16 19 H -0.27 -4.78 7.11 56.52 0.40 -4.38 16 20 H -0.27 -4.49 7.11 56.52 0.40 -4.09 16 21 H -0.27 -4.88 7.11 56.52 0.40 -4.48 16 22 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 23 H 0.06 0.95 7.10 -51.93 -0.37 0.58 16 24 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.05 0.74 8.04 -51.93 -0.42 0.32 16 26 H 0.07 1.22 7.23 -51.93 -0.38 0.84 16 27 H 0.10 1.63 8.05 -52.49 -0.42 1.21 16 28 H 0.10 1.73 8.06 -52.49 -0.42 1.31 16 29 H 0.14 3.19 6.05 -52.48 -0.32 2.87 16 30 H 0.30 7.34 7.22 -40.82 -0.29 7.04 16 LS Contribution 277.36 15.07 4.18 4.18 Total: -1.00 -23.20 277.36 -8.29 -31.48 By element: Atomic # 1 Polarization: 5.87 SS G_CDS: -2.60 Total: 3.27 kcal Atomic # 6 Polarization: -21.84 SS G_CDS: -3.69 Total: -25.53 kcal Atomic # 7 Polarization: -27.35 SS G_CDS: 1.42 Total: -25.93 kcal Atomic # 14 Polarization: 18.84 SS G_CDS: -5.10 Total: 13.74 kcal Atomic # 16 Polarization: 1.28 SS G_CDS: -2.50 Total: -1.22 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -23.20 -8.29 -31.48 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396218759.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.990 kcal (2) G-P(sol) polarization free energy of solvation -23.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.485 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds