Wall clock time and date at job start Mon Mar 30 2020 06:44:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.50704 * 109.46824 * 2 1 4 4 C 1.37663 * 119.92277 * 265.01711 * 3 2 1 5 5 C 1.38081 * 121.14924 * 180.02562 * 4 3 2 6 6 C 1.39753 * 121.50732 * 0.02562 * 5 4 3 7 7 S 1.76052 * 130.36643 * 179.97438 * 6 5 4 8 8 C 1.75507 * 91.62641 * 179.41313 * 7 6 5 9 9 C 1.43202 * 124.81917 * 179.97438 * 8 7 6 10 10 N 8.62663 * 105.38665 * 25.60781 * 2 1 3 11 11 C 1.35573 * 110.35404 * 0.44346 * 8 7 6 12 12 C 1.39266 * 115.36112 * 359.51332 * 11 8 7 13 13 C 1.40317 * 119.92987 * 84.99855 * 3 2 1 14 14 C 1.40392 * 120.40801 * 359.97438 * 13 3 2 15 15 H 1.08000 * 119.99969 * 322.06113 * 14 13 3 16 16 C 1.40159 * 120.00204 * 142.06237 * 14 13 3 17 17 N 1.30730 * 119.99844 * 334.80129 * 16 14 13 18 18 Si 1.86796 * 119.99990 * 154.80279 * 16 14 13 19 19 H 1.48506 * 109.47175 * 270.00017 * 18 16 14 20 20 H 1.48501 * 109.47436 * 29.99682 * 18 16 14 21 21 H 1.48498 * 109.47014 * 150.00135 * 18 16 14 22 22 H 1.08992 * 109.46928 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.46783 * 300.00619 * 1 2 3 24 24 H 1.09001 * 109.46399 * 60.00170 * 1 2 3 25 25 H 1.08994 * 109.46956 * 239.99865 * 2 1 3 26 26 H 1.08996 * 109.46583 * 119.99366 * 2 1 3 27 27 H 1.07998 * 119.43192 * 0.02639 * 4 3 2 28 28 H 1.08001 * 119.24895 * 179.97438 * 5 4 3 29 29 H 1.08003 * 122.31659 * 179.53905 * 11 8 7 30 30 H 0.97005 * 120.00106 * 353.00711 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.3590 2.0338 -1.1886 5 6 2.8220 3.3343 -1.2180 6 6 2.9786 4.0805 -0.0468 7 16 3.5423 5.7319 0.1863 8 6 3.3219 5.6151 1.9236 9 6 3.6005 6.6660 2.8556 10 7 3.8190 7.5004 3.5949 11 6 2.8602 4.3853 2.2586 12 6 2.6566 3.5135 1.1919 13 6 2.1658 2.1163 1.2114 14 6 1.8334 1.4969 2.4267 15 1 0.9818 0.8348 2.4802 16 6 2.6068 1.7376 3.5705 17 7 3.8571 2.1000 3.4498 18 14 1.8511 1.5406 5.2674 19 1 1.2594 2.8325 5.6988 20 1 0.7907 0.5020 5.2195 21 1 2.9023 1.1306 6.2328 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3632 0.5138 -0.8900 25 1 1.8934 -0.5138 -0.8899 26 1 1.8933 -0.5137 0.8900 27 1 2.2512 1.4880 -2.1143 28 1 3.0695 3.7850 -2.1678 29 1 2.6635 4.1014 3.2820 30 1 4.2786 2.1043 2.5762 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396218759.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:14 Heat of formation + Delta-G solvation = 34.532256 kcal Electronic energy + Delta-G solvation = -16101.244583 eV Core-core repulsion = 13565.348598 eV Total energy + Delta-G solvation = -2535.895985 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.057 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.28681 -37.94531 -36.42035 -35.94771 -33.65050 -30.97979 -29.74231 -27.23624 -25.21526 -24.33022 -22.54506 -21.01987 -20.38271 -18.78393 -17.44933 -16.54288 -16.38694 -15.79829 -15.43488 -15.25890 -14.95237 -14.52398 -14.31192 -14.00121 -13.90485 -13.74427 -13.51817 -13.12790 -12.93634 -12.60149 -12.40632 -12.04182 -11.90695 -11.83369 -11.51056 -11.43510 -11.04375 -10.82893 -10.11417 -9.40628 -9.10247 -8.47180 -6.46375 -0.46577 0.45054 0.78133 1.05501 1.29994 1.51521 1.60214 1.75054 1.88028 2.25313 2.27917 2.58868 3.02666 3.32573 4.19852 4.26042 4.36115 4.53796 4.65906 4.77924 4.80819 4.99672 5.06808 5.12311 5.21514 5.29494 5.35225 5.52932 5.61810 5.66348 5.84725 5.92949 6.04794 6.24737 6.38418 6.62289 6.78243 7.90809 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.015074 B = 0.011139 C = 0.006812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1857.050834 B = 2513.116322 C = 4109.224484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.055 4.055 3 C -0.213 4.213 4 C -0.032 4.032 5 C -0.230 4.230 6 C -0.075 4.075 7 S 0.115 5.885 8 C -0.239 4.239 9 C 0.313 3.687 10 N -0.468 5.468 11 C 0.024 3.976 12 C -0.215 4.215 13 C 0.125 3.875 14 C -0.495 4.495 15 H 0.099 0.901 16 C 0.012 3.988 17 N -0.783 5.783 18 Si 1.095 2.905 19 H -0.270 1.270 20 H -0.248 1.248 21 H -0.275 1.275 22 H 0.066 0.934 23 H 0.039 0.961 24 H 0.052 0.948 25 H 0.070 0.930 26 H 0.053 0.947 27 H 0.135 0.865 28 H 0.123 0.877 29 H 0.127 0.873 30 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.054 -4.116 -5.274 7.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.092 4.092 3 C -0.217 4.217 4 C -0.054 4.054 5 C -0.256 4.256 6 C -0.192 4.192 7 S 0.379 5.621 8 C -0.356 4.356 9 C 0.000 4.000 10 N -0.148 5.148 11 C -0.010 4.010 12 C -0.221 4.221 13 C 0.120 3.880 14 C -0.522 4.522 15 H 0.117 0.883 16 C -0.209 4.209 17 N -0.403 5.403 18 Si 0.913 3.087 19 H -0.195 1.195 20 H -0.171 1.171 21 H -0.199 1.199 22 H 0.085 0.915 23 H 0.058 0.942 24 H 0.071 0.929 25 H 0.088 0.912 26 H 0.071 0.929 27 H 0.153 0.847 28 H 0.141 0.859 29 H 0.145 0.855 30 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -2.802 -1.370 -3.411 4.623 hybrid contribution -0.521 -1.285 -0.851 1.627 sum -3.323 -2.655 -4.263 6.022 Atomic orbital electron populations 1.21681 0.95212 1.01377 1.01141 1.20126 0.95811 0.91961 1.01298 1.19960 1.11898 0.97354 0.92501 1.20759 0.93933 0.93295 0.97368 1.19961 1.14797 0.96079 0.94783 1.22861 1.02010 0.96531 0.97761 1.83175 1.71540 1.10570 0.96857 1.19212 1.25220 0.95314 0.95875 1.24521 0.91715 0.91704 0.92103 1.81142 1.12997 1.11094 1.09531 1.20375 0.91006 0.89727 0.99938 1.19073 1.16144 0.95888 0.90984 1.18662 0.87549 0.87907 0.93912 1.20849 1.12726 1.24336 0.94273 0.88316 1.28187 0.93981 0.90273 1.08461 1.70505 1.11965 1.27244 1.30631 0.83269 0.76396 0.79125 0.69932 1.19520 1.17132 1.19946 0.91540 0.94218 0.92904 0.91187 0.92872 0.84677 0.85937 0.85485 0.89915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.92 9.82 71.99 0.71 -3.22 16 2 C -0.05 -1.78 5.44 29.85 0.16 -1.62 16 3 C -0.21 -8.29 5.18 -19.49 -0.10 -8.40 16 4 C -0.03 -1.14 9.58 22.10 0.21 -0.93 16 5 C -0.23 -8.49 10.02 22.60 0.23 -8.27 16 6 C -0.08 -3.10 6.48 23.06 0.15 -2.95 16 7 S 0.12 4.28 23.23 -56.49 -1.31 2.97 16 8 C -0.24 -10.00 6.24 22.90 0.14 -9.85 16 9 C 0.31 13.10 15.78 88.33 1.39 14.49 16 10 N -0.47 -20.01 18.54 19.00 0.35 -19.65 16 11 C 0.02 1.07 8.21 21.90 0.18 1.25 16 12 C -0.22 -9.70 5.09 -19.99 -0.10 -9.81 16 13 C 0.13 5.57 5.10 -19.63 -0.10 5.47 16 14 C -0.50 -21.78 7.63 23.26 0.18 -21.60 16 15 H 0.10 4.15 6.45 -2.91 -0.02 4.13 16 16 C 0.01 0.54 3.61 85.32 0.31 0.85 16 17 N -0.78 -37.21 11.60 21.86 0.25 -36.96 16 18 Si 1.09 38.20 30.00 68.60 2.06 40.25 16 19 H -0.27 -9.41 7.11 99.48 0.71 -8.71 16 20 H -0.25 -7.70 7.11 99.48 0.71 -6.99 16 21 H -0.27 -9.66 7.11 99.48 0.71 -8.95 16 22 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 23 H 0.04 1.26 7.10 -2.39 -0.02 1.24 16 24 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 25 H 0.07 1.95 8.04 -2.39 -0.02 1.93 16 26 H 0.05 1.87 7.23 -2.39 -0.02 1.86 16 27 H 0.14 3.80 8.05 -2.91 -0.02 3.78 16 28 H 0.12 3.88 8.06 -2.91 -0.02 3.86 16 29 H 0.13 5.97 6.05 -2.91 -0.02 5.95 16 30 H 0.29 14.45 7.22 -92.70 -0.67 13.78 16 Total: -1.00 -49.11 277.36 5.98 -43.13 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: 1.28 Total: 14.83 kcal Atomic # 6 Polarization: -47.93 SS G_CDS: 3.36 Total: -44.58 kcal Atomic # 7 Polarization: -57.21 SS G_CDS: 0.61 Total: -56.61 kcal Atomic # 14 Polarization: 38.20 SS G_CDS: 2.06 Total: 40.25 kcal Atomic # 16 Polarization: 4.28 SS G_CDS: -1.31 Total: 2.97 kcal Total: -49.11 5.98 -43.13 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396218759.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.660 kcal (2) G-P(sol) polarization free energy of solvation -49.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.128 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds