Wall clock time and date at job start Mon Mar 30 2020 06:45:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50703 * 109.47024 * 2 1 4 4 C 1.36026 * 119.47293 * 265.00347 * 3 2 1 5 5 C 1.40617 * 120.50091 * 180.02562 * 4 3 2 6 6 C 1.40178 * 120.26091 * 179.97438 * 5 4 3 7 7 H 1.08001 * 120.00388 * 154.32318 * 6 5 4 8 8 C 1.40289 * 119.99489 * 334.31406 * 6 5 4 9 9 N 1.30649 * 119.99999 * 342.65105 * 8 6 5 10 10 Si 1.86804 * 119.99617 * 162.64871 * 8 6 5 11 11 H 1.48500 * 109.46958 * 0.02562 * 10 8 6 12 12 H 1.48501 * 109.46947 * 120.00076 * 10 8 6 13 13 H 1.48495 * 109.47093 * 240.00391 * 10 8 6 14 14 C 1.47954 * 119.48416 * 359.97046 * 5 4 3 15 15 C 1.40018 * 129.25779 * 179.70421 * 14 5 4 16 16 C 1.32720 * 115.80523 * 179.80825 * 15 14 5 17 17 S 1.75525 * 110.62685 * 0.46878 * 16 15 14 18 18 C 1.39512 * 118.04524 * 0.02562 * 14 5 4 19 19 C 1.39786 * 119.47265 * 85.02598 * 3 2 1 20 20 C 1.43199 * 119.48473 * 359.97276 * 19 3 2 21 21 N 3.52636 * 90.16133 * 74.87984 * 2 1 3 22 22 H 1.08998 * 109.47068 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.46727 * 299.99642 * 1 2 3 24 24 H 1.08994 * 109.47164 * 59.99900 * 1 2 3 25 25 H 1.09005 * 109.47165 * 240.00308 * 2 1 3 26 26 H 1.08997 * 109.47651 * 120.00240 * 2 1 3 27 27 H 1.08002 * 119.75139 * 0.02562 * 4 3 2 28 28 H 0.97000 * 119.99862 * 179.97438 * 9 8 6 29 29 H 1.08001 * 122.09757 * 0.02562 * 15 14 5 30 30 H 1.07999 * 124.68288 * 180.20555 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3527 2.0175 -1.1797 5 6 2.8239 3.3421 -1.2048 6 6 3.1530 3.9518 -2.4234 7 1 3.1108 5.0269 -2.5181 8 6 3.5374 3.1656 -3.5198 9 7 3.9167 1.9289 -3.3358 10 14 3.5069 3.8868 -5.2427 11 1 3.0433 5.2962 -5.1811 12 1 4.8731 3.8405 -5.8229 13 1 2.5807 3.0972 -6.0935 14 6 2.9695 4.0874 0.0650 15 6 3.4190 5.3963 0.2776 16 6 3.4391 5.8022 1.5411 17 16 2.8874 4.5239 2.6100 18 6 2.6291 3.4358 1.2507 19 6 2.1621 2.1045 1.2124 20 6 1.8151 1.4439 2.4346 21 7 1.5400 0.9198 3.4043 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 1.8934 -0.5138 -0.8901 26 1 1.8935 -0.5138 0.8899 27 1 2.2443 1.4696 -2.1042 28 1 4.1821 1.3852 -4.0939 29 1 3.7266 6.0367 -0.5358 30 1 3.7556 6.7820 1.8668 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396218765.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:02 Heat of formation + Delta-G solvation = 42.858877 kcal Electronic energy + Delta-G solvation = -15972.214005 eV Core-core repulsion = 13436.679089 eV Total energy + Delta-G solvation = -2535.534916 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.057 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.60403 -35.92688 -34.97514 -34.32848 -31.70814 -30.23896 -27.78208 -26.08620 -23.37040 -22.69391 -20.87893 -19.48252 -17.85244 -17.59432 -15.94398 -15.18830 -14.94933 -14.13992 -13.71089 -13.41138 -13.34606 -12.83968 -12.64386 -12.32066 -12.09878 -11.88652 -11.82341 -11.73293 -11.50011 -11.21690 -11.05059 -10.88121 -10.57043 -10.38931 -9.98113 -9.89441 -9.73001 -9.51358 -8.40708 -7.53130 -7.32374 -6.97970 -4.84539 1.77298 2.08861 2.48279 2.73883 2.78272 2.83813 2.92352 3.36654 3.49467 3.71969 3.84205 4.41952 5.16119 5.23279 5.54020 5.62684 5.76353 5.94477 6.17378 6.23119 6.33531 6.35063 6.35365 6.48459 6.67814 6.73897 6.90181 6.95740 7.08172 7.39461 7.49227 7.58433 7.71339 8.04096 8.21818 8.37088 8.61588 9.47461 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.018263 B = 0.008789 C = 0.006181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.790879 B = 3185.131508 C = 4529.068594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.086 4.086 3 C 0.023 3.977 4 C -0.191 4.191 5 C 0.167 3.833 6 C -0.397 4.397 7 H 0.095 0.905 8 C 0.069 3.931 9 N -0.739 5.739 10 Si 0.920 3.080 11 H -0.253 1.253 12 H -0.267 1.267 13 H -0.264 1.264 14 C -0.193 4.193 15 C -0.057 4.057 16 C -0.275 4.275 17 S 0.017 5.983 18 C -0.021 4.021 19 C -0.177 4.177 20 C 0.287 3.713 21 N -0.503 5.503 22 H 0.048 0.952 23 H 0.051 0.949 24 H 0.058 0.942 25 H 0.072 0.928 26 H 0.059 0.941 27 H 0.129 0.871 28 H 0.295 0.705 29 H 0.128 0.872 30 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.791 2.191 -3.540 4.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.124 4.124 3 C 0.019 3.981 4 C -0.213 4.213 5 C 0.160 3.840 6 C -0.422 4.422 7 H 0.113 0.887 8 C -0.157 4.157 9 N -0.359 5.359 10 Si 0.742 3.258 11 H -0.176 1.176 12 H -0.192 1.192 13 H -0.189 1.189 14 C -0.200 4.200 15 C -0.087 4.087 16 C -0.408 4.408 17 S 0.279 5.721 18 C -0.139 4.139 19 C -0.190 4.190 20 C -0.023 4.023 21 N -0.182 5.182 22 H 0.067 0.933 23 H 0.070 0.930 24 H 0.077 0.923 25 H 0.091 0.909 26 H 0.078 0.922 27 H 0.146 0.854 28 H 0.107 0.893 29 H 0.146 0.854 30 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -1.253 1.160 -0.593 1.808 hybrid contribution 0.485 0.620 -2.547 2.665 sum -0.769 1.780 -3.139 3.690 Atomic orbital electron populations 1.21686 0.95350 1.00690 1.02098 1.20569 0.95771 0.94071 1.01978 1.18879 0.94168 0.93575 0.91497 1.20497 1.07919 0.96485 0.96357 1.18526 0.85154 0.90843 0.89459 1.19948 1.32466 0.96099 0.93726 0.88655 1.26299 0.92201 0.94482 1.02721 1.69743 1.23351 1.07779 1.35063 0.86027 0.79418 0.81000 0.79350 1.17601 1.19204 1.18892 1.18983 1.13474 0.95071 0.92484 1.19675 0.98164 0.94939 0.95912 1.24566 1.17426 1.02695 0.96139 1.83788 1.70870 1.06709 1.10775 1.22172 1.00889 0.95720 0.95135 1.14370 1.25279 0.92674 0.86688 1.25957 0.91473 0.92285 0.92554 1.81051 1.15213 1.10488 1.11495 0.93279 0.93016 0.92335 0.90932 0.92216 0.85358 0.89326 0.85411 0.83417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.30 9.88 37.16 0.37 -1.93 16 2 C -0.09 -1.57 5.52 -27.88 -0.15 -1.72 16 3 C 0.02 0.50 5.11 -104.84 -0.54 -0.04 16 4 C -0.19 -4.25 8.16 -39.48 -0.32 -4.57 16 5 C 0.17 3.81 5.75 -104.29 -0.60 3.21 16 6 C -0.40 -8.56 8.80 -38.08 -0.34 -8.90 16 7 H 0.10 1.93 7.53 -52.49 -0.40 1.54 16 8 C 0.07 1.39 5.13 -17.28 -0.09 1.30 16 9 N -0.74 -15.42 10.98 55.57 0.61 -14.81 16 10 Si 0.92 14.93 29.60 -169.99 -5.03 9.89 16 11 H -0.25 -4.09 7.11 56.52 0.40 -3.69 16 12 H -0.27 -4.32 7.11 56.52 0.40 -3.92 16 13 H -0.26 -4.25 7.11 56.52 0.40 -3.85 16 14 C -0.19 -4.33 6.02 -104.77 -0.63 -4.96 16 15 C -0.06 -1.14 9.75 -40.80 -0.40 -1.54 16 16 C -0.28 -5.08 11.12 28.85 0.32 -4.76 16 17 S 0.02 0.35 22.99 -107.50 -2.47 -2.13 16 18 C -0.02 -0.47 6.33 -38.01 -0.24 -0.71 16 19 C -0.18 -3.97 5.78 -106.29 -0.61 -4.59 16 20 C 0.29 6.40 13.13 -22.47 -0.30 6.11 16 21 N -0.50 -11.46 18.54 41.84 0.78 -10.68 16 22 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 23 H 0.05 0.90 7.82 -51.93 -0.41 0.49 16 24 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 25 H 0.07 1.23 8.01 -51.93 -0.42 0.82 16 26 H 0.06 1.11 7.19 -51.93 -0.37 0.73 16 27 H 0.13 2.83 6.15 -52.49 -0.32 2.51 16 28 H 0.30 5.44 8.29 -40.82 -0.34 5.10 16 29 H 0.13 2.29 7.73 -52.49 -0.41 1.88 16 30 H 0.15 2.27 8.06 -52.49 -0.42 1.84 16 LS Contribution 280.97 15.07 4.23 4.23 Total: -1.00 -24.26 280.97 -8.13 -32.39 By element: Atomic # 1 Polarization: 6.93 SS G_CDS: -2.72 Total: 4.21 kcal Atomic # 6 Polarization: -19.59 SS G_CDS: -3.53 Total: -23.11 kcal Atomic # 7 Polarization: -26.88 SS G_CDS: 1.39 Total: -25.49 kcal Atomic # 14 Polarization: 14.93 SS G_CDS: -5.03 Total: 9.89 kcal Atomic # 16 Polarization: 0.35 SS G_CDS: -2.47 Total: -2.13 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -24.26 -8.13 -32.39 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396218765.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.245 kcal (2) G-P(sol) polarization free energy of solvation -24.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.386 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds