Wall clock time and date at job start Mon Mar 30 2020 06:45:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50703 * 109.47024 * 2 1 4 4 C 1.36026 * 119.47293 * 265.00347 * 3 2 1 5 5 C 1.40617 * 120.50091 * 180.02562 * 4 3 2 6 6 C 1.40178 * 120.26091 * 179.97438 * 5 4 3 7 7 H 1.08001 * 120.00388 * 154.32318 * 6 5 4 8 8 C 1.40289 * 119.99489 * 334.31406 * 6 5 4 9 9 N 1.30649 * 119.99999 * 342.65105 * 8 6 5 10 10 Si 1.86804 * 119.99617 * 162.64871 * 8 6 5 11 11 H 1.48500 * 109.46958 * 0.02562 * 10 8 6 12 12 H 1.48501 * 109.46947 * 120.00076 * 10 8 6 13 13 H 1.48495 * 109.47093 * 240.00391 * 10 8 6 14 14 C 1.47954 * 119.48416 * 359.97046 * 5 4 3 15 15 C 1.40018 * 129.25779 * 179.70421 * 14 5 4 16 16 C 1.32720 * 115.80523 * 179.80825 * 15 14 5 17 17 S 1.75525 * 110.62685 * 0.46878 * 16 15 14 18 18 C 1.39512 * 118.04524 * 0.02562 * 14 5 4 19 19 C 1.39786 * 119.47265 * 85.02598 * 3 2 1 20 20 C 1.43199 * 119.48473 * 359.97276 * 19 3 2 21 21 N 3.52636 * 90.16133 * 74.87984 * 2 1 3 22 22 H 1.08998 * 109.47068 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.46727 * 299.99642 * 1 2 3 24 24 H 1.08994 * 109.47164 * 59.99900 * 1 2 3 25 25 H 1.09005 * 109.47165 * 240.00308 * 2 1 3 26 26 H 1.08997 * 109.47651 * 120.00240 * 2 1 3 27 27 H 1.08002 * 119.75139 * 0.02562 * 4 3 2 28 28 H 0.97000 * 119.99862 * 179.97438 * 9 8 6 29 29 H 1.08001 * 122.09757 * 0.02562 * 15 14 5 30 30 H 1.07999 * 124.68288 * 180.20555 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3527 2.0175 -1.1797 5 6 2.8239 3.3421 -1.2048 6 6 3.1530 3.9518 -2.4234 7 1 3.1108 5.0269 -2.5181 8 6 3.5374 3.1656 -3.5198 9 7 3.9167 1.9289 -3.3358 10 14 3.5069 3.8868 -5.2427 11 1 3.0433 5.2962 -5.1811 12 1 4.8731 3.8405 -5.8229 13 1 2.5807 3.0972 -6.0935 14 6 2.9695 4.0874 0.0650 15 6 3.4190 5.3963 0.2776 16 6 3.4391 5.8022 1.5411 17 16 2.8874 4.5239 2.6100 18 6 2.6291 3.4358 1.2507 19 6 2.1621 2.1045 1.2124 20 6 1.8151 1.4439 2.4346 21 7 1.5400 0.9198 3.4043 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 1.8934 -0.5138 -0.8901 26 1 1.8935 -0.5138 0.8899 27 1 2.2443 1.4696 -2.1042 28 1 4.1821 1.3852 -4.0939 29 1 3.7266 6.0367 -0.5358 30 1 3.7556 6.7820 1.8668 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396218765.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:02 Heat of formation + Delta-G solvation = 33.674697 kcal Electronic energy + Delta-G solvation = -15972.612260 eV Core-core repulsion = 13436.679089 eV Total energy + Delta-G solvation = -2535.933172 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.057 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.22077 -37.59595 -36.57268 -35.94056 -33.20538 -31.88190 -29.33349 -27.71604 -24.87135 -24.30785 -22.41452 -21.09924 -19.46854 -19.20365 -17.51321 -16.70070 -16.52445 -15.67155 -15.22471 -14.99840 -14.88553 -14.36644 -14.16729 -13.87150 -13.76146 -13.46555 -13.41980 -13.20837 -12.92143 -12.83358 -12.52262 -12.27634 -11.99931 -11.85579 -11.53164 -11.44339 -11.31387 -11.07893 -10.04784 -9.11649 -8.90700 -8.59402 -6.50100 0.18920 0.41656 0.87575 1.35220 1.41690 1.46558 1.60921 1.77117 1.96339 2.14113 2.24612 2.74845 3.50366 3.53815 4.05388 4.19863 4.29787 4.53325 4.68200 4.72941 4.83341 4.87561 4.95859 4.98731 5.17635 5.27161 5.35795 5.36308 5.48102 5.79528 5.88479 5.95770 6.06197 6.40713 6.57532 6.71102 6.88255 7.97692 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.018263 B = 0.008789 C = 0.006181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.790879 B = 3185.131508 C = 4529.068594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.084 4.084 3 C 0.021 3.979 4 C -0.207 4.207 5 C 0.139 3.861 6 C -0.409 4.409 7 H 0.104 0.896 8 C 0.037 3.963 9 N -0.763 5.763 10 Si 0.990 3.010 11 H -0.250 1.250 12 H -0.263 1.263 13 H -0.260 1.260 14 C -0.210 4.210 15 C -0.076 4.076 16 C -0.253 4.253 17 S 0.021 5.979 18 C -0.047 4.047 19 C -0.202 4.202 20 C 0.295 3.705 21 N -0.519 5.519 22 H 0.075 0.925 23 H 0.035 0.965 24 H 0.061 0.939 25 H 0.083 0.917 26 H 0.053 0.947 27 H 0.125 0.875 28 H 0.306 0.694 29 H 0.147 0.853 30 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.574 3.196 -4.785 5.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.121 4.121 3 C 0.016 3.984 4 C -0.228 4.228 5 C 0.133 3.867 6 C -0.433 4.433 7 H 0.122 0.878 8 C -0.187 4.187 9 N -0.383 5.383 10 Si 0.809 3.191 11 H -0.173 1.173 12 H -0.188 1.188 13 H -0.184 1.184 14 C -0.217 4.217 15 C -0.105 4.105 16 C -0.386 4.386 17 S 0.282 5.718 18 C -0.165 4.165 19 C -0.215 4.215 20 C -0.014 4.014 21 N -0.200 5.200 22 H 0.094 0.906 23 H 0.054 0.946 24 H 0.080 0.920 25 H 0.102 0.898 26 H 0.071 0.929 27 H 0.143 0.857 28 H 0.118 0.882 29 H 0.165 0.835 30 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -1.038 2.153 -1.815 3.001 hybrid contribution 0.481 0.361 -2.174 2.255 sum -0.558 2.513 -3.989 4.748 Atomic orbital electron populations 1.21632 0.93782 1.02234 1.01475 1.20590 0.97078 0.92330 1.02117 1.19151 0.93425 0.94813 0.90970 1.20500 1.09140 0.96769 0.96439 1.18881 0.85992 0.91468 0.90353 1.20273 1.32172 0.96825 0.94060 0.87803 1.27098 0.91208 0.94550 1.05848 1.69754 1.22964 1.08832 1.36799 0.84994 0.79455 0.80209 0.74440 1.17311 1.18755 1.18426 1.19342 1.13724 0.96251 0.92418 1.19858 0.99082 0.94400 0.97169 1.25001 1.15106 1.03388 0.95127 1.83731 1.70702 1.06869 1.10489 1.22466 1.01489 0.96293 0.96291 1.14550 1.26770 0.93220 0.86958 1.25987 0.91069 0.91926 0.92412 1.81032 1.16151 1.10990 1.11791 0.90638 0.94571 0.91951 0.89832 0.92861 0.85731 0.88172 0.83549 0.79727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.29 9.88 71.98 0.71 -3.58 16 2 C -0.08 -3.05 5.52 29.85 0.16 -2.88 16 3 C 0.02 0.91 5.11 -20.00 -0.10 0.81 16 4 C -0.21 -9.37 8.16 22.34 0.18 -9.18 16 5 C 0.14 6.43 5.75 -19.65 -0.11 6.32 16 6 C -0.41 -17.43 8.80 23.24 0.20 -17.23 16 7 H 0.10 4.11 7.53 -2.91 -0.02 4.09 16 8 C 0.04 1.45 5.13 85.37 0.44 1.89 16 9 N -0.76 -31.43 10.98 21.89 0.24 -31.19 16 10 Si 0.99 29.09 29.60 68.60 2.03 31.12 16 11 H -0.25 -7.19 7.11 99.48 0.71 -6.48 16 12 H -0.26 -7.53 7.11 99.48 0.71 -6.82 16 13 H -0.26 -7.43 7.11 99.48 0.71 -6.72 16 14 C -0.21 -9.44 6.02 -19.96 -0.12 -9.56 16 15 C -0.08 -2.93 9.75 21.53 0.21 -2.72 16 16 C -0.25 -8.79 11.12 66.65 0.74 -8.05 16 17 S 0.02 0.82 22.99 -56.49 -1.30 -0.48 16 18 C -0.05 -2.15 6.33 23.29 0.15 -2.00 16 19 C -0.20 -9.24 5.78 -20.95 -0.12 -9.36 16 20 C 0.29 13.35 13.13 88.33 1.16 14.51 16 21 N -0.52 -23.87 18.54 19.00 0.35 -23.52 16 22 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 23 H 0.04 1.25 7.82 -2.39 -0.02 1.23 16 24 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 25 H 0.08 2.81 8.01 -2.38 -0.02 2.79 16 26 H 0.05 1.99 7.19 -2.39 -0.02 1.97 16 27 H 0.13 5.59 6.15 -2.91 -0.02 5.57 16 28 H 0.31 11.01 8.29 -92.71 -0.77 10.24 16 29 H 0.15 4.97 7.73 -2.91 -0.02 4.95 16 30 H 0.19 4.95 8.06 -2.91 -0.02 4.93 16 Total: -1.00 -51.48 280.97 6.00 -45.48 By element: Atomic # 1 Polarization: 18.45 SS G_CDS: 1.17 Total: 19.62 kcal Atomic # 6 Polarization: -44.52 SS G_CDS: 3.50 Total: -41.02 kcal Atomic # 7 Polarization: -55.30 SS G_CDS: 0.59 Total: -54.71 kcal Atomic # 14 Polarization: 29.09 SS G_CDS: 2.03 Total: 31.12 kcal Atomic # 16 Polarization: 0.82 SS G_CDS: -1.30 Total: -0.48 kcal Total: -51.48 6.00 -45.48 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396218765.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.152 kcal (2) G-P(sol) polarization free energy of solvation -51.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.478 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds