Wall clock time and date at job start Mon Mar 30 2020 06:41:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50689 * 109.47424 * 2 1 4 4 C 1.36923 * 122.48583 * 90.02293 * 3 2 1 5 5 C 1.39895 * 124.82673 * 359.97438 * 4 3 2 6 6 H 1.07999 * 120.00076 * 359.97438 * 5 4 3 7 7 C 1.40212 * 119.99824 * 179.97438 * 5 4 3 8 8 N 1.30748 * 119.99847 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00039 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.46819 * 60.00085 * 9 7 5 11 11 H 1.48494 * 109.47288 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47086 * 300.00381 * 9 7 5 13 13 S 1.75456 * 110.34290 * 180.24260 * 4 3 2 14 14 C 1.75979 * 91.78424 * 359.65609 * 13 4 3 15 15 C 1.39858 * 122.48176 * 270.00428 * 3 2 1 16 16 C 1.41872 * 128.46105 * 359.97438 * 15 3 2 17 17 C 1.37168 * 120.71081 * 179.97438 * 16 15 3 18 18 C 1.38471 * 120.73239 * 0.03996 * 17 16 15 19 19 C 1.39294 * 120.06721 * 359.97438 * 18 17 16 20 20 C 1.43197 * 119.96678 * 179.97438 * 19 18 17 21 21 N 7.25155 * 108.98318 * 346.37111 * 2 1 3 22 22 H 1.09003 * 109.47104 * 300.00456 * 1 2 3 23 23 H 1.08994 * 109.47237 * 59.99909 * 1 2 3 24 24 H 1.08998 * 109.47418 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.46664 * 239.99699 * 2 1 3 26 26 H 1.09003 * 109.47007 * 120.00003 * 2 1 3 27 27 H 0.96996 * 119.99547 * 179.97438 * 8 7 5 28 28 H 1.07997 * 119.64260 * 0.02562 * 16 15 3 29 29 H 1.07992 * 119.63242 * 180.02562 * 17 16 15 30 30 H 1.08002 * 119.96249 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.2780 2.1139 1.1550 5 6 2.0981 1.6051 2.4457 6 1 1.7402 0.5955 2.5832 7 6 2.3825 2.4061 3.5608 8 7 2.8152 3.6286 3.3943 9 14 2.1416 1.7271 5.2843 10 1 3.0045 0.5330 5.4709 11 1 2.5092 2.7647 6.2810 12 1 0.7191 1.3440 5.4711 13 16 2.8432 3.7334 0.7859 14 6 2.7443 3.4328 -0.9452 15 6 2.2827 2.1288 -1.1798 16 6 2.1287 1.6920 -2.5208 17 6 2.4234 2.5275 -3.5679 18 6 2.8784 3.8151 -3.3394 19 6 3.0415 4.2765 -2.0353 20 6 3.5127 5.6084 -1.8014 21 7 3.8889 6.6641 -1.6158 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 3.0116 4.1828 4.1658 28 1 1.7748 0.6911 -2.7191 29 1 2.2993 2.1770 -4.5819 30 1 3.1072 4.4623 -4.1732 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396219938.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:56 Heat of formation + Delta-G solvation = 19.673954 kcal Electronic energy + Delta-G solvation = -15856.417969 eV Core-core repulsion = 13319.877680 eV Total energy + Delta-G solvation = -2536.540289 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.057 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.17006 -37.92821 -36.85334 -35.39527 -32.54392 -31.73734 -30.75550 -27.19921 -25.13260 -23.81710 -23.06168 -21.07221 -19.29081 -18.56767 -17.60921 -16.93476 -15.98765 -15.88783 -15.38353 -15.11788 -14.69100 -14.50540 -14.19090 -13.99963 -13.82417 -13.60871 -13.21217 -13.10125 -12.84576 -12.78392 -12.54995 -12.09775 -11.94916 -11.85057 -11.41711 -11.35715 -10.98848 -10.82745 -10.07572 -9.21239 -8.88979 -8.26475 -6.44039 -0.07157 0.53926 1.27665 1.34253 1.38758 1.50759 1.62608 1.72169 1.91413 2.13390 2.22211 2.94283 3.07313 3.30920 4.30666 4.36585 4.53896 4.64987 4.66720 4.86459 4.91925 4.94506 5.03058 5.20174 5.31104 5.39805 5.47418 5.56923 5.65385 5.74743 5.80287 6.02709 6.15808 6.28725 6.46988 6.58673 6.64889 7.96961 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.021179 B = 0.008457 C = 0.006173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.724917 B = 3310.050239 C = 4534.970289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.019 4.019 3 C -0.340 4.340 4 C 0.033 3.967 5 C -0.403 4.403 6 H 0.110 0.890 7 C 0.015 3.985 8 N -0.807 5.807 9 Si 1.005 2.995 10 H -0.252 1.252 11 H -0.268 1.268 12 H -0.253 1.253 13 S 0.090 5.910 14 C -0.246 4.246 15 C 0.001 3.999 16 C -0.115 4.115 17 C -0.105 4.105 18 C -0.116 4.116 19 C -0.004 4.004 20 C 0.278 3.722 21 N -0.472 5.472 22 H 0.033 0.967 23 H 0.044 0.956 24 H 0.064 0.936 25 H 0.059 0.941 26 H 0.046 0.954 27 H 0.308 0.692 28 H 0.135 0.865 29 H 0.162 0.838 30 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.698 -6.417 -4.282 8.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.059 4.059 3 C -0.346 4.346 4 C -0.085 4.085 5 C -0.436 4.436 6 H 0.128 0.872 7 C -0.203 4.203 8 N -0.433 5.433 9 Si 0.824 3.176 10 H -0.176 1.176 11 H -0.192 1.192 12 H -0.176 1.176 13 S 0.352 5.648 14 C -0.364 4.364 15 C -0.007 4.007 16 C -0.136 4.136 17 C -0.125 4.125 18 C -0.138 4.138 19 C -0.013 4.013 20 C -0.035 4.035 21 N -0.148 5.148 22 H 0.052 0.948 23 H 0.064 0.936 24 H 0.083 0.917 25 H 0.078 0.922 26 H 0.065 0.935 27 H 0.121 0.879 28 H 0.153 0.847 29 H 0.180 0.820 30 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -1.615 -3.333 -2.956 4.739 hybrid contribution -0.428 -1.226 0.118 1.304 sum -2.042 -4.559 -2.839 5.746 Atomic orbital electron populations 1.21659 0.96124 1.00691 1.00588 1.19591 0.94862 0.91261 1.00151 1.18672 1.26191 1.00169 0.89608 1.21571 0.95959 0.93817 0.97196 1.19625 1.34061 1.01087 0.88864 0.87185 1.27270 0.91609 0.94167 1.07241 1.68673 1.29986 1.08476 1.36170 0.84836 0.80522 0.79079 0.73200 1.17598 1.19225 1.17641 1.85181 1.71439 1.15971 0.92199 1.23784 1.12809 0.99261 1.00501 1.18069 0.96703 0.91222 0.94717 1.21370 1.01575 1.00485 0.90120 1.20929 0.99186 0.92604 0.99788 1.21033 1.02310 0.97577 0.92920 1.15506 1.06562 0.85114 0.94122 1.26254 0.92225 0.93038 0.91993 1.81085 1.11694 1.12966 1.09096 0.94799 0.93637 0.91697 0.92240 0.93489 0.87912 0.84739 0.82026 0.83424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.37 9.90 71.98 0.71 -3.65 16 2 C -0.02 -0.71 5.64 29.85 0.17 -0.54 16 3 C -0.34 -15.19 5.20 -19.78 -0.10 -15.29 16 4 C 0.03 1.65 6.11 22.36 0.14 1.79 16 5 C -0.40 -19.09 8.83 23.15 0.20 -18.89 16 6 H 0.11 4.84 6.67 -2.91 -0.02 4.82 16 7 C 0.02 0.68 5.50 85.33 0.47 1.15 16 8 N -0.81 -38.36 10.58 21.88 0.23 -38.13 16 9 Si 1.00 33.56 29.56 68.60 2.03 35.59 16 10 H -0.25 -8.10 7.11 99.48 0.71 -7.40 16 11 H -0.27 -8.64 7.11 99.48 0.71 -7.93 16 12 H -0.25 -8.13 7.11 99.48 0.71 -7.42 16 13 S 0.09 4.50 19.81 -56.49 -1.12 3.38 16 14 C -0.25 -11.17 6.34 23.45 0.15 -11.02 16 15 C 0.00 0.03 5.84 -21.49 -0.13 -0.09 16 16 C -0.12 -3.85 9.67 22.92 0.22 -3.63 16 17 C -0.10 -2.94 9.97 22.07 0.22 -2.72 16 18 C -0.12 -3.61 9.74 22.58 0.22 -3.39 16 19 C 0.00 -0.18 5.76 -21.10 -0.12 -0.30 16 20 C 0.28 11.54 15.05 88.33 1.33 12.87 16 21 N -0.47 -20.38 18.54 19.00 0.35 -20.03 16 22 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 23 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 24 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 25 H 0.06 1.95 7.32 -2.39 -0.02 1.93 16 26 H 0.05 1.75 6.89 -2.39 -0.02 1.74 16 27 H 0.31 13.27 8.29 -92.71 -0.77 12.50 16 28 H 0.13 3.81 7.38 -2.91 -0.02 3.79 16 29 H 0.16 3.07 8.06 -2.91 -0.02 3.04 16 30 H 0.15 3.61 8.06 -2.91 -0.02 3.59 16 Total: -1.00 -56.07 280.44 6.15 -49.92 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: 1.17 Total: 12.99 kcal Atomic # 6 Polarization: -47.20 SS G_CDS: 3.48 Total: -43.72 kcal Atomic # 7 Polarization: -58.75 SS G_CDS: 0.58 Total: -58.16 kcal Atomic # 14 Polarization: 33.56 SS G_CDS: 2.03 Total: 35.59 kcal Atomic # 16 Polarization: 4.50 SS G_CDS: -1.12 Total: 3.38 kcal Total: -56.07 6.15 -49.92 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396219938.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.597 kcal (2) G-P(sol) polarization free energy of solvation -56.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.923 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds