Wall clock time and date at job start Mon Mar 30 2020 06:44:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50696 * 109.46794 * 2 1 4 4 C 1.37645 * 120.02849 * 264.97701 * 3 2 1 5 5 C 1.38056 * 121.18446 * 180.02562 * 4 3 2 6 6 C 1.39858 * 121.46430 * 359.96210 * 5 4 3 7 7 S 1.75841 * 130.40534 * 180.02562 * 6 5 4 8 8 C 1.70031 * 93.02883 * 179.82837 * 7 6 5 9 9 C 1.35487 * 111.95054 * 0.30565 * 8 7 6 10 10 C 1.43199 * 123.12488 * 179.90417 * 9 8 7 11 11 N 6.17479 * 98.54549 * 50.95942 * 2 1 3 12 12 C 1.39314 * 119.71800 * 0.03884 * 6 5 4 13 13 C 1.40443 * 120.01882 * 85.00651 * 3 2 1 14 14 C 1.40710 * 120.45477 * 359.94918 * 13 3 2 15 15 H 1.07998 * 119.99933 * 303.86428 * 14 13 3 16 16 C 1.39973 * 119.99888 * 123.85200 * 14 13 3 17 17 N 1.30839 * 120.00284 * 350.81793 * 16 14 13 18 18 Si 1.86805 * 119.99771 * 170.81728 * 16 14 13 19 19 H 1.48498 * 109.47069 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.47236 * 120.00310 * 18 16 14 21 21 H 1.48502 * 109.46984 * 240.00009 * 18 16 14 22 22 H 1.09000 * 109.46719 * 179.97438 * 1 2 3 23 23 H 1.08995 * 109.46653 * 299.99633 * 1 2 3 24 24 H 1.09000 * 109.47094 * 59.99555 * 1 2 3 25 25 H 1.09003 * 109.46607 * 240.00646 * 2 1 3 26 26 H 1.08992 * 109.47344 * 120.00712 * 2 1 3 27 27 H 1.07994 * 119.40596 * 0.02970 * 4 3 2 28 28 H 1.08002 * 119.26540 * 179.97438 * 5 4 3 29 29 H 1.08004 * 124.02402 * 180.16840 * 8 7 6 30 30 H 0.97002 * 120.00031 * 185.23820 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3602 2.0355 -1.1871 5 6 2.8231 3.3358 -1.2148 6 6 2.9769 4.0811 -0.0414 7 16 3.5378 5.7307 0.1959 8 6 3.3458 5.6490 1.8833 9 6 2.8860 4.4388 2.2828 10 6 2.6404 4.1087 3.6544 11 7 2.4476 3.8461 4.7427 12 6 2.6595 3.5073 1.1878 13 6 2.1667 2.1185 1.2114 14 6 1.8341 1.5006 2.4310 15 1 0.8469 1.0869 2.5752 16 6 2.7827 1.4218 3.4573 17 7 4.0261 1.7570 3.2260 18 14 2.2734 0.8381 5.1571 19 1 0.8227 0.5212 5.1576 20 1 3.0456 -0.3790 5.5145 21 1 2.5474 1.9075 6.1504 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3632 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 1.8933 -0.5138 -0.8901 26 1 1.8934 -0.5139 0.8898 27 1 2.2535 1.4907 -2.1135 28 1 3.0717 3.7877 -2.1638 29 1 3.5664 6.4640 2.5568 30 1 4.6984 1.6309 3.9137 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396220204.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:17 Heat of formation + Delta-G solvation = 57.435375 kcal Electronic energy + Delta-G solvation = -16487.334605 eV Core-core repulsion = 13952.431774 eV Total energy + Delta-G solvation = -2534.902831 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.057 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -38.48723 -36.03901 -34.59895 -33.34557 -32.17575 -29.40585 -28.02372 -25.32581 -23.93483 -22.49169 -21.43587 -19.39684 -17.92352 -16.48391 -16.12760 -15.14360 -14.53516 -14.33493 -13.82493 -13.28671 -13.08057 -12.82988 -12.58039 -12.37754 -12.20590 -11.82417 -11.68645 -11.47322 -11.30342 -11.09879 -10.72493 -10.49428 -10.40000 -10.13653 -9.95050 -9.80677 -9.45696 -9.04761 -8.08481 -7.47724 -6.81245 -6.57035 -4.57698 1.45441 2.30750 2.45415 2.71680 2.82405 3.04411 3.19422 3.32446 3.81820 4.04533 4.36587 4.57564 5.10188 5.19464 5.48389 5.77262 5.87127 6.01322 6.15772 6.23470 6.24617 6.51713 6.60972 6.66986 6.70844 6.87557 6.97384 7.14024 7.15778 7.37892 7.49893 7.74523 7.95610 8.25026 8.53519 8.61803 8.77919 10.20678 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.016339 B = 0.012638 C = 0.007746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1713.315817 B = 2215.024492 C = 3614.040188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.056 4.056 3 C -0.175 4.175 4 C -0.060 4.060 5 C -0.190 4.190 6 C -0.113 4.113 7 S 0.109 5.891 8 C -0.241 4.241 9 C 0.035 3.965 10 C 0.311 3.689 11 N -0.453 5.453 12 C -0.095 4.095 13 C 0.187 3.813 14 C -0.485 4.485 15 H 0.088 0.912 16 C 0.086 3.914 17 N -0.804 5.804 18 Si 0.892 3.108 19 H -0.265 1.265 20 H -0.282 1.282 21 H -0.245 1.245 22 H 0.041 0.959 23 H 0.056 0.944 24 H 0.043 0.957 25 H 0.046 0.954 26 H 0.072 0.928 27 H 0.102 0.898 28 H 0.100 0.900 29 H 0.158 0.842 30 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.311 2.747 -5.636 6.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.094 4.094 3 C -0.178 4.178 4 C -0.081 4.081 5 C -0.215 4.215 6 C -0.227 4.227 7 S 0.374 5.626 8 C -0.380 4.380 9 C 0.017 3.983 10 C -0.003 4.003 11 N -0.132 5.132 12 C -0.102 4.102 13 C 0.183 3.817 14 C -0.516 4.516 15 H 0.106 0.894 16 C -0.131 4.131 17 N -0.430 5.430 18 Si 0.717 3.283 19 H -0.189 1.189 20 H -0.208 1.208 21 H -0.169 1.169 22 H 0.060 0.940 23 H 0.075 0.925 24 H 0.063 0.937 25 H 0.065 0.935 26 H 0.091 0.909 27 H 0.120 0.880 28 H 0.118 0.882 29 H 0.176 0.824 30 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.877 3.637 -4.746 6.044 hybrid contribution -0.299 -1.299 1.420 1.948 sum -1.176 2.338 -3.326 4.232 Atomic orbital electron populations 1.21731 0.96739 0.99892 1.01532 1.20098 0.94468 0.93685 1.01108 1.19808 1.09531 0.95792 0.92713 1.20377 0.97460 0.93636 0.96648 1.19660 1.12241 0.95350 0.94223 1.22282 1.06462 0.96496 0.97507 1.82265 1.69606 1.11865 0.98823 1.24600 1.11226 1.01018 1.01147 1.15898 1.03074 0.92943 0.86389 1.24813 0.92391 0.91354 0.91776 1.80963 1.10007 1.09267 1.12935 1.20011 1.07697 0.94402 0.88111 1.18091 0.84603 0.86571 0.92484 1.19239 1.00156 1.35489 0.96677 0.89435 1.25788 0.94608 0.93034 0.99640 1.69752 1.01423 1.36613 1.35172 0.86527 0.79700 0.78706 0.83361 1.18930 1.20842 1.16909 0.94034 0.92468 0.93738 0.93517 0.90925 0.88036 0.88167 0.82438 0.90910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.38 9.90 37.16 0.37 -2.01 16 2 C -0.06 -1.06 5.59 -27.88 -0.16 -1.22 16 3 C -0.18 -3.79 5.18 -104.01 -0.54 -4.33 16 4 C -0.06 -1.19 9.58 -39.86 -0.38 -1.57 16 5 C -0.19 -3.74 10.02 -39.04 -0.39 -4.13 16 6 C -0.11 -2.36 6.46 -38.58 -0.25 -2.61 16 7 S 0.11 1.86 22.98 -107.50 -2.47 -0.61 16 8 C -0.24 -4.48 10.65 29.75 0.32 -4.16 16 9 C 0.03 0.78 5.55 -106.05 -0.59 0.19 16 10 C 0.31 7.35 11.47 -22.47 -0.26 7.10 16 11 N -0.45 -11.02 14.60 41.84 0.61 -10.41 16 12 C -0.09 -2.23 5.67 -102.87 -0.58 -2.81 16 13 C 0.19 4.53 5.23 -104.41 -0.55 3.99 16 14 C -0.49 -12.15 6.80 -38.00 -0.26 -12.41 16 15 H 0.09 2.17 6.94 -52.49 -0.36 1.81 16 16 C 0.09 2.18 2.98 -17.32 -0.05 2.13 16 17 N -0.80 -20.91 11.31 55.55 0.63 -20.28 16 18 Si 0.89 20.59 27.30 -169.99 -4.64 15.95 16 19 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 20 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 21 H -0.25 -5.83 6.42 56.52 0.36 -5.47 16 22 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 23 H 0.06 1.04 7.18 -51.93 -0.37 0.67 16 24 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 25 H 0.05 0.78 8.05 -51.93 -0.42 0.37 16 26 H 0.07 1.49 7.31 -51.93 -0.38 1.11 16 27 H 0.10 1.69 8.05 -52.49 -0.42 1.27 16 28 H 0.10 1.70 8.06 -52.49 -0.42 1.27 16 29 H 0.16 2.45 8.06 -52.48 -0.42 2.03 16 30 H 0.28 7.00 8.30 -40.82 -0.34 6.66 16 LS Contribution 270.14 15.07 4.07 4.07 Total: -1.00 -26.64 270.14 -7.94 -34.58 By element: Atomic # 1 Polarization: 1.36 SS G_CDS: -2.82 Total: -1.46 kcal Atomic # 6 Polarization: -18.52 SS G_CDS: -3.32 Total: -21.84 kcal Atomic # 7 Polarization: -31.94 SS G_CDS: 1.24 Total: -30.70 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -4.64 Total: 15.95 kcal Atomic # 16 Polarization: 1.86 SS G_CDS: -2.47 Total: -0.61 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -26.64 -7.94 -34.58 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396220204.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.015 kcal (2) G-P(sol) polarization free energy of solvation -26.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.579 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds