Wall clock time and date at job start Mon Mar 30 2020 06:13:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39541 * 120.12386 * 157.80051 * 3 2 1 5 5 C 1.37541 * 120.27524 * 180.02562 * 4 3 2 6 6 C 1.39964 * 120.97322 * 359.97438 * 5 4 3 7 7 S 1.75865 * 129.98377 * 180.02562 * 6 5 4 8 8 C 1.69966 * 93.22369 * 179.97438 * 7 6 5 9 9 C 1.36600 * 111.94449 * 0.02562 * 8 7 6 10 10 C 1.40922 * 123.28427 * 179.97438 * 9 8 7 11 11 H 1.08007 * 119.99567 * 139.53507 * 10 9 8 12 12 C 1.39728 * 120.00148 * 319.53368 * 10 9 8 13 13 N 1.31047 * 119.99979 * 352.65800 * 12 10 9 14 14 Si 1.86796 * 119.99856 * 172.65624 * 12 10 9 15 15 H 1.48500 * 109.47419 * 0.02562 * 14 12 10 16 16 H 1.48506 * 109.47216 * 120.00089 * 14 12 10 17 17 H 1.48499 * 109.47504 * 240.00148 * 14 12 10 18 18 C 1.39530 * 119.91585 * 0.02562 * 6 5 4 19 19 C 1.40553 * 120.11916 * 337.82886 * 3 2 1 20 20 C 1.46756 * 120.08985 * 359.97438 * 19 3 2 21 21 O 1.21306 * 119.99636 * 354.39842 * 20 19 3 22 22 H 1.08003 * 119.86067 * 0.02562 * 4 3 2 23 23 H 1.07998 * 119.51020 * 179.72618 * 5 4 3 24 24 H 1.08000 * 124.02844 * 179.97438 * 8 7 6 25 25 H 0.97003 * 120.00103 * 180.02562 * 13 12 10 26 26 H 1.08002 * 119.99913 * 174.39694 * 20 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2678 1.1184 -0.4560 5 6 4.6433 1.1222 -0.4579 6 6 5.3672 0.0132 -0.0052 7 16 7.1050 -0.2368 0.0971 8 6 6.9388 -1.8027 0.7369 9 6 5.6279 -2.1585 0.8816 10 6 5.2170 -3.4066 1.3908 11 1 4.3786 -3.4635 2.0693 12 6 5.8943 -4.5706 1.0179 13 7 6.8158 -4.5229 0.0874 14 14 5.4861 -6.1945 1.8458 15 1 4.4173 -5.9811 2.8545 16 1 5.0163 -7.1660 0.8256 17 1 6.6996 -6.7278 2.5152 18 6 4.6921 -1.1174 0.4561 19 6 3.2738 -1.1249 0.4588 20 6 2.5452 -2.3045 0.9399 21 8 1.3366 -2.2724 1.0379 22 1 2.7272 1.9842 -0.8090 23 1 5.1724 1.9923 -0.8177 24 1 7.7705 -2.4406 0.9972 25 1 7.2857 -5.3310 -0.1717 26 1 3.0851 -3.2010 1.2068 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396220712.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:59 Heat of formation + Delta-G solvation = 32.685347 kcal Electronic energy + Delta-G solvation = -15671.288340 eV Core-core repulsion = 12999.479173 eV Total energy + Delta-G solvation = -2671.809168 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 257.025 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.68005 -37.71440 -36.20445 -34.97928 -32.57652 -31.08552 -28.87621 -26.79486 -24.20455 -23.19125 -21.21689 -20.30276 -17.98984 -17.15943 -16.75032 -15.50975 -15.41859 -14.80255 -14.19690 -14.01148 -13.85064 -13.46728 -13.03285 -12.96315 -12.58446 -12.31042 -11.96163 -11.75370 -11.61776 -11.30864 -11.00543 -10.89246 -10.41256 -10.18352 -9.82274 -9.44695 -8.99273 -8.86180 -7.79094 -6.95512 -6.82850 -4.61426 0.69469 1.28158 2.39608 2.84952 2.86943 3.03432 3.06932 3.17564 3.19360 3.34867 3.67720 3.87383 4.29048 4.34161 4.75916 4.92936 5.13487 5.46019 5.65699 5.80390 6.00659 6.23145 6.30663 6.54274 6.59787 6.95765 7.00356 7.29039 7.59759 7.91370 7.96374 8.10005 8.46514 8.65706 10.14963 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.018080 B = 0.009581 C = 0.006413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.315011 B = 2921.717480 C = 4365.190876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C 0.267 3.733 3 C 0.002 3.998 4 C -0.098 4.098 5 C -0.060 4.060 6 C -0.144 4.144 7 S 0.080 5.920 8 C -0.314 4.314 9 C 0.087 3.913 10 C -0.468 4.468 11 H 0.085 0.915 12 C 0.078 3.922 13 N -0.805 5.805 14 Si 0.905 3.095 15 H -0.259 1.259 16 H -0.273 1.273 17 H -0.272 1.272 18 C -0.019 4.019 19 C -0.099 4.099 20 C 0.362 3.638 21 O -0.473 6.473 22 H 0.132 0.868 23 H 0.129 0.871 24 H 0.153 0.847 25 H 0.280 0.720 26 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.121 5.655 -0.512 6.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.100 5.100 2 C -0.048 4.048 3 C -0.005 4.005 4 C -0.121 4.121 5 C -0.083 4.083 6 C -0.261 4.261 7 S 0.346 5.654 8 C -0.449 4.449 9 C 0.078 3.922 10 C -0.501 4.501 11 H 0.103 0.897 12 C -0.139 4.139 13 N -0.431 5.431 14 Si 0.730 3.270 15 H -0.183 1.183 16 H -0.199 1.199 17 H -0.197 1.197 18 C -0.031 4.031 19 C -0.104 4.104 20 C 0.223 3.777 21 O -0.348 6.348 22 H 0.150 0.850 23 H 0.147 0.853 24 H 0.170 0.830 25 H 0.091 0.909 26 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 1.265 6.290 -0.903 6.479 hybrid contribution -0.539 -1.819 0.508 1.964 sum 0.726 4.471 -0.395 4.546 Atomic orbital electron populations 1.81062 1.12100 1.08432 1.08412 1.25360 0.92451 0.93096 0.93848 1.15838 0.84395 0.95555 1.04726 1.20640 0.93485 0.96880 1.01121 1.20459 0.92846 0.96614 0.98414 1.22944 0.99327 0.97995 1.05831 1.82101 0.99457 1.15028 1.68852 1.24420 1.00912 0.98661 1.20953 1.17215 0.88568 0.91550 0.94865 1.18955 1.14985 0.89794 1.26358 0.89685 1.25701 0.93828 1.00779 0.93554 1.69826 1.19448 1.30725 1.23094 0.86281 0.79564 0.81121 0.80049 1.18265 1.19859 1.19742 1.19874 0.91685 0.94500 0.97022 1.20722 0.92883 0.95090 1.01748 1.25306 0.88658 0.92255 0.71443 1.90488 1.17911 1.85041 1.41318 0.84976 0.85287 0.82987 0.90941 0.83836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -8.55 18.41 41.84 0.77 -7.78 15 2 C 0.27 5.02 12.72 -22.47 -0.29 4.74 15 3 C 0.00 0.04 5.76 -106.61 -0.61 -0.57 15 4 C -0.10 -1.41 9.71 -39.35 -0.38 -1.79 15 5 C -0.06 -0.87 10.03 -39.19 -0.39 -1.27 15 6 C -0.14 -2.61 6.44 -38.45 -0.25 -2.86 15 7 S 0.08 1.44 22.96 -107.50 -2.47 -1.03 15 8 C -0.31 -6.86 9.47 30.14 0.29 -6.58 15 9 C 0.09 1.95 5.45 -106.23 -0.58 1.37 15 10 C -0.47 -10.61 7.36 -38.01 -0.28 -10.89 15 11 H 0.09 1.82 5.82 -52.48 -0.31 1.51 15 12 C 0.08 1.77 5.37 -17.33 -0.09 1.67 15 13 N -0.80 -19.06 11.81 55.54 0.66 -18.40 15 14 Si 0.91 17.30 29.57 -169.99 -5.03 12.27 15 15 H -0.26 -4.88 7.11 56.52 0.40 -4.48 15 16 H -0.27 -5.25 7.11 56.52 0.40 -4.85 15 17 H -0.27 -5.19 7.11 56.52 0.40 -4.79 15 18 C -0.02 -0.40 6.02 -104.80 -0.63 -1.03 15 19 C -0.10 -1.91 5.94 -104.21 -0.62 -2.53 15 20 C 0.36 7.18 10.83 34.17 0.37 7.55 15 21 O -0.47 -10.26 15.12 5.54 0.08 -10.17 15 22 H 0.13 1.47 8.06 -52.48 -0.42 1.05 15 23 H 0.13 1.46 8.06 -52.49 -0.42 1.03 15 24 H 0.15 3.53 7.44 -52.49 -0.39 3.14 15 25 H 0.28 6.14 8.30 -40.82 -0.34 5.80 15 26 H 0.15 2.79 4.37 -52.49 -0.23 2.56 15 LS Contribution 256.34 15.07 3.86 3.86 Total: -1.00 -25.97 256.34 -6.50 -32.47 By element: Atomic # 1 Polarization: 1.88 SS G_CDS: -0.91 Total: 0.97 kcal Atomic # 6 Polarization: -8.72 SS G_CDS: -3.47 Total: -12.19 kcal Atomic # 7 Polarization: -27.61 SS G_CDS: 1.43 Total: -26.18 kcal Atomic # 8 Polarization: -10.26 SS G_CDS: 0.08 Total: -10.17 kcal Atomic # 14 Polarization: 17.30 SS G_CDS: -5.03 Total: 12.27 kcal Atomic # 16 Polarization: 1.44 SS G_CDS: -2.47 Total: -1.03 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -25.97 -6.50 -32.47 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396220712.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.152 kcal (2) G-P(sol) polarization free energy of solvation -25.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.467 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds