Wall clock time and date at job start Mon Mar 30 2020 06:45:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50696 * 109.47244 * 2 1 4 4 C 1.40209 * 119.97780 * 276.67043 * 3 2 1 5 5 C 1.46694 * 129.46368 * 0.02562 * 4 3 2 6 6 C 1.40753 * 123.30579 * 359.97438 * 5 4 3 7 7 H 1.07997 * 119.99933 * 318.15449 * 6 5 4 8 8 C 1.39767 * 120.00033 * 138.14926 * 6 5 4 9 9 N 1.31036 * 120.00102 * 181.57227 * 8 6 5 10 10 Si 1.86800 * 119.99745 * 1.57574 * 8 6 5 11 11 H 1.48498 * 109.47331 * 84.81158 * 10 8 6 12 12 H 1.48501 * 109.47060 * 204.81133 * 10 8 6 13 13 H 1.48499 * 109.47248 * 324.80915 * 10 8 6 14 14 C 1.36409 * 113.39667 * 179.97438 * 5 4 3 15 15 S 1.69967 * 112.01142 * 0.02562 * 14 5 4 16 16 C 1.39580 * 119.32607 * 179.97438 * 4 3 2 17 17 C 1.40091 * 119.81183 * 359.97438 * 16 4 3 18 18 C 1.36174 * 120.72004 * 0.02562 * 17 16 4 19 19 C 1.39005 * 119.97666 * 96.64920 * 3 2 1 20 20 C 1.43201 * 120.04067 * 0.02562 * 19 3 2 21 21 N 3.54924 * 101.05150 * 77.84715 * 2 1 3 22 22 H 1.09001 * 109.47083 * 59.99744 * 1 2 3 23 23 H 1.09000 * 109.46796 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.46649 * 300.00088 * 1 2 3 25 25 H 1.08999 * 109.47342 * 239.99876 * 2 1 3 26 26 H 1.09002 * 109.47171 * 119.99711 * 2 1 3 27 27 H 0.97003 * 119.99826 * 180.02562 * 9 8 6 28 28 H 1.08000 * 124.00008 * 180.02562 * 14 5 4 29 29 H 1.08010 * 119.63979 * 180.27977 * 17 16 4 30 30 H 1.07996 * 119.91114 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.1329 2.1283 -1.2063 5 6 1.8103 1.6960 -2.5705 6 6 1.3185 0.4137 -2.8789 7 1 1.7376 -0.4561 -2.3950 8 6 0.2879 0.2661 -3.8114 9 7 -0.1909 -0.9246 -4.0758 10 14 -0.4069 1.7664 -4.6807 11 1 0.4313 2.0852 -5.8643 12 1 -1.7971 1.4843 -5.1202 13 1 -0.4075 2.9226 -3.7487 14 6 2.0336 2.6586 -3.5108 15 16 2.6277 4.0950 -2.8234 16 6 2.5994 3.4437 -1.1905 17 6 2.9599 4.0403 0.0247 18 6 2.8611 3.3504 1.1946 19 6 2.3953 2.0291 1.1960 20 6 2.2927 1.3063 2.4280 21 7 2.2104 0.7333 3.4054 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 -0.9060 -1.0270 -4.7232 28 1 1.8541 2.5240 -4.5673 29 1 3.3162 5.0599 0.0343 30 1 3.1430 3.8229 2.1239 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396220802.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:22 Heat of formation + Delta-G solvation = 54.861724 kcal Electronic energy + Delta-G solvation = -16282.553102 eV Core-core repulsion = 13747.538669 eV Total energy + Delta-G solvation = -2535.014433 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.057 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.51382 -36.39545 -35.05661 -33.62763 -32.71974 -29.70882 -28.68516 -26.11958 -23.60975 -23.27701 -21.33117 -19.89566 -17.82084 -16.89442 -16.83381 -15.65717 -14.87859 -14.38809 -13.96731 -13.64726 -13.29112 -13.09830 -13.03911 -12.67094 -12.54424 -12.07924 -11.97759 -11.79173 -11.65240 -11.38232 -11.14151 -10.77189 -10.47552 -10.18942 -9.97326 -9.83587 -9.60455 -9.24217 -8.71449 -7.80371 -7.01944 -6.81940 -4.58248 1.11299 1.50390 2.39797 2.91018 3.00617 3.07621 3.14154 3.26733 3.30018 3.52817 3.96848 4.25852 4.29892 4.89426 5.10825 5.18392 5.59637 5.63870 5.79663 5.96086 6.02952 6.13139 6.35505 6.45327 6.48798 6.59361 6.64949 6.81402 6.87993 7.02017 7.15461 7.31002 7.52833 7.83652 8.18055 8.34196 8.69905 10.11234 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.020309 B = 0.009997 C = 0.007085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.372495 B = 2800.133205 C = 3950.825872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.100 4.100 3 C 0.038 3.962 4 C -0.071 4.071 5 C 0.093 3.907 6 C -0.433 4.433 7 H 0.104 0.896 8 C 0.088 3.912 9 N -0.821 5.821 10 Si 0.902 3.098 11 H -0.272 1.272 12 H -0.294 1.294 13 H -0.242 1.242 14 C -0.420 4.420 15 S 0.083 5.917 16 C -0.112 4.112 17 C -0.105 4.105 18 C -0.068 4.068 19 C -0.074 4.074 20 C 0.276 3.724 21 N -0.448 5.448 22 H 0.075 0.925 23 H 0.054 0.946 24 H 0.037 0.963 25 H 0.108 0.892 26 H 0.054 0.946 27 H 0.284 0.716 28 H 0.143 0.857 29 H 0.125 0.875 30 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.607 7.148 3.405 8.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.136 4.136 3 C 0.034 3.966 4 C -0.081 4.081 5 C 0.084 3.916 6 C -0.466 4.466 7 H 0.121 0.879 8 C -0.129 4.129 9 N -0.447 5.447 10 Si 0.730 3.270 11 H -0.198 1.198 12 H -0.221 1.221 13 H -0.165 1.165 14 C -0.554 4.554 15 S 0.348 5.652 16 C -0.229 4.229 17 C -0.129 4.129 18 C -0.091 4.091 19 C -0.081 4.081 20 C -0.038 4.038 21 N -0.124 5.124 22 H 0.094 0.906 23 H 0.073 0.927 24 H 0.057 0.943 25 H 0.126 0.874 26 H 0.073 0.927 27 H 0.095 0.905 28 H 0.160 0.840 29 H 0.143 0.857 30 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 2.692 7.409 4.026 8.851 hybrid contribution -0.823 -0.582 -0.490 1.121 sum 1.869 6.826 3.536 7.912 Atomic orbital electron populations 1.21574 0.93925 1.01714 1.01877 1.20919 0.97329 0.91896 1.03493 1.19795 0.91631 0.95567 0.89643 1.19382 1.02117 0.92442 0.94199 1.17470 0.92670 0.94506 0.86955 1.18969 1.15508 0.91936 1.20154 0.87895 1.25931 0.95654 0.97134 0.94193 1.69660 1.22941 1.23678 1.28452 0.86403 0.76928 0.83127 0.80578 1.19806 1.22137 1.16534 1.24106 1.28754 1.00360 1.02228 1.81908 1.69957 1.17905 0.95398 1.23016 1.03562 0.97923 0.98402 1.19962 1.03355 0.99721 0.89845 1.20409 0.98560 0.92185 0.97920 1.15620 1.11712 0.94328 0.86452 1.25641 0.92735 0.92794 0.92591 1.81166 1.10549 1.09128 1.11594 0.90592 0.92679 0.94344 0.87376 0.92731 0.90536 0.83970 0.85738 0.85525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.45 9.61 37.16 0.36 -2.09 16 2 C -0.10 -1.83 5.05 -27.88 -0.14 -1.97 16 3 C 0.04 0.71 5.22 -103.60 -0.54 0.17 16 4 C -0.07 -1.45 5.98 -105.24 -0.63 -2.08 16 5 C 0.09 2.11 5.10 -106.19 -0.54 1.57 16 6 C -0.43 -10.40 7.10 -38.06 -0.27 -10.67 16 7 H 0.10 2.55 5.47 -52.49 -0.29 2.27 16 8 C 0.09 2.14 5.52 -17.32 -0.10 2.05 16 9 N -0.82 -20.62 13.94 55.54 0.77 -19.84 16 10 Si 0.90 19.83 24.68 -169.99 -4.20 15.63 16 11 H -0.27 -5.90 6.77 56.52 0.38 -5.52 16 12 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 13 H -0.24 -5.40 6.57 56.52 0.37 -5.03 16 14 C -0.42 -9.19 7.78 30.07 0.23 -8.95 16 15 S 0.08 1.53 22.96 -107.50 -2.47 -0.94 16 16 C -0.11 -2.06 6.45 -38.39 -0.25 -2.30 16 17 C -0.11 -1.57 10.00 -39.63 -0.40 -1.97 16 18 C -0.07 -0.96 9.68 -39.63 -0.38 -1.35 16 19 C -0.07 -1.21 5.73 -106.99 -0.61 -1.82 16 20 C 0.28 4.62 13.65 -22.47 -0.31 4.32 16 21 N -0.45 -8.00 18.54 41.84 0.78 -7.23 16 22 H 0.08 1.55 7.06 -51.93 -0.37 1.19 16 23 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 24 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.11 2.16 4.84 -51.93 -0.25 1.91 16 26 H 0.05 0.94 6.83 -51.93 -0.35 0.59 16 27 H 0.28 6.63 8.30 -40.82 -0.34 6.29 16 28 H 0.14 3.18 5.19 -52.49 -0.27 2.91 16 29 H 0.12 1.49 8.06 -52.48 -0.42 1.07 16 30 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 LS Contribution 267.53 15.07 4.03 4.03 Total: -1.00 -24.93 267.53 -7.06 -31.99 By element: Atomic # 1 Polarization: 3.86 SS G_CDS: -2.41 Total: 1.45 kcal Atomic # 6 Polarization: -21.53 SS G_CDS: -3.57 Total: -25.10 kcal Atomic # 7 Polarization: -28.62 SS G_CDS: 1.55 Total: -27.07 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -4.20 Total: 15.63 kcal Atomic # 16 Polarization: 1.53 SS G_CDS: -2.47 Total: -0.94 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -24.93 -7.06 -31.99 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396220802.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.852 kcal (2) G-P(sol) polarization free energy of solvation -24.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.990 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds