Wall clock time and date at job start Mon Mar 30 2020 06:45:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50696 * 109.47244 * 2 1 4 4 C 1.40209 * 119.97780 * 276.67043 * 3 2 1 5 5 C 1.46694 * 129.46368 * 0.02562 * 4 3 2 6 6 C 1.40753 * 123.30579 * 359.97438 * 5 4 3 7 7 H 1.07997 * 119.99933 * 318.15449 * 6 5 4 8 8 C 1.39767 * 120.00033 * 138.14926 * 6 5 4 9 9 N 1.31036 * 120.00102 * 181.57227 * 8 6 5 10 10 Si 1.86800 * 119.99745 * 1.57574 * 8 6 5 11 11 H 1.48498 * 109.47331 * 84.81158 * 10 8 6 12 12 H 1.48501 * 109.47060 * 204.81133 * 10 8 6 13 13 H 1.48499 * 109.47248 * 324.80915 * 10 8 6 14 14 C 1.36409 * 113.39667 * 179.97438 * 5 4 3 15 15 S 1.69967 * 112.01142 * 0.02562 * 14 5 4 16 16 C 1.39580 * 119.32607 * 179.97438 * 4 3 2 17 17 C 1.40091 * 119.81183 * 359.97438 * 16 4 3 18 18 C 1.36174 * 120.72004 * 0.02562 * 17 16 4 19 19 C 1.39005 * 119.97666 * 96.64920 * 3 2 1 20 20 C 1.43201 * 120.04067 * 0.02562 * 19 3 2 21 21 N 3.54924 * 101.05150 * 77.84715 * 2 1 3 22 22 H 1.09001 * 109.47083 * 59.99744 * 1 2 3 23 23 H 1.09000 * 109.46796 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.46649 * 300.00088 * 1 2 3 25 25 H 1.08999 * 109.47342 * 239.99876 * 2 1 3 26 26 H 1.09002 * 109.47171 * 119.99711 * 2 1 3 27 27 H 0.97003 * 119.99826 * 180.02562 * 9 8 6 28 28 H 1.08000 * 124.00008 * 180.02562 * 14 5 4 29 29 H 1.08010 * 119.63979 * 180.27977 * 17 16 4 30 30 H 1.07996 * 119.91114 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.1329 2.1283 -1.2063 5 6 1.8103 1.6960 -2.5705 6 6 1.3185 0.4137 -2.8789 7 1 1.7376 -0.4561 -2.3950 8 6 0.2879 0.2661 -3.8114 9 7 -0.1909 -0.9246 -4.0758 10 14 -0.4069 1.7664 -4.6807 11 1 0.4313 2.0852 -5.8643 12 1 -1.7971 1.4843 -5.1202 13 1 -0.4075 2.9226 -3.7487 14 6 2.0336 2.6586 -3.5108 15 16 2.6277 4.0950 -2.8234 16 6 2.5994 3.4437 -1.1905 17 6 2.9599 4.0403 0.0247 18 6 2.8611 3.3504 1.1946 19 6 2.3953 2.0291 1.1960 20 6 2.2927 1.3063 2.4280 21 7 2.2104 0.7333 3.4054 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 -0.9060 -1.0270 -4.7232 28 1 1.8541 2.5240 -4.5673 29 1 3.3162 5.0599 0.0343 30 1 3.1430 3.8229 2.1239 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396220802.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:22 Heat of formation + Delta-G solvation = 43.052190 kcal Electronic energy + Delta-G solvation = -16283.065202 eV Core-core repulsion = 13747.538669 eV Total energy + Delta-G solvation = -2535.526533 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.057 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.91875 -37.84347 -36.58697 -35.08201 -34.42625 -31.15644 -30.14551 -27.82940 -25.06157 -24.71843 -22.88490 -21.38507 -19.33804 -18.53837 -18.29726 -17.21014 -16.39476 -15.92484 -15.34909 -15.06072 -14.82739 -14.62191 -14.55229 -14.19958 -14.02628 -13.63144 -13.38987 -13.33973 -13.17310 -12.97184 -12.68420 -12.36959 -12.04493 -11.68346 -11.52932 -11.41709 -11.22907 -11.00935 -10.15069 -9.28407 -8.75541 -8.42367 -6.38944 -0.24431 0.08054 0.96525 1.21718 1.33752 1.45042 1.57902 1.65729 1.67510 2.01555 2.17073 2.83591 2.94249 3.14067 3.75331 3.92405 4.11801 4.37045 4.44107 4.53853 4.57648 4.65412 4.88503 4.98215 5.11231 5.15515 5.21924 5.30173 5.40696 5.47305 5.60616 5.75963 5.93308 6.35133 6.50085 6.56700 6.87975 8.33041 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.020309 B = 0.009997 C = 0.007085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.372495 B = 2800.133205 C = 3950.825872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.094 4.094 3 C 0.024 3.976 4 C -0.102 4.102 5 C 0.078 3.922 6 C -0.446 4.446 7 H 0.082 0.918 8 C 0.055 3.945 9 N -0.862 5.862 10 Si 0.944 3.056 11 H -0.269 1.269 12 H -0.290 1.290 13 H -0.246 1.246 14 C -0.432 4.432 15 S 0.128 5.872 16 C -0.121 4.121 17 C -0.093 4.093 18 C -0.047 4.047 19 C -0.066 4.066 20 C 0.290 3.710 21 N -0.464 5.464 22 H 0.049 0.951 23 H 0.055 0.945 24 H 0.052 0.948 25 H 0.084 0.916 26 H 0.064 0.936 27 H 0.287 0.713 28 H 0.132 0.868 29 H 0.167 0.833 30 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.643 10.035 5.263 11.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.131 4.131 3 C 0.019 3.981 4 C -0.112 4.112 5 C 0.068 3.932 6 C -0.480 4.480 7 H 0.100 0.900 8 C -0.158 4.158 9 N -0.491 5.491 10 Si 0.770 3.230 11 H -0.195 1.195 12 H -0.218 1.218 13 H -0.170 1.170 14 C -0.567 4.567 15 S 0.393 5.607 16 C -0.238 4.238 17 C -0.116 4.116 18 C -0.070 4.070 19 C -0.074 4.074 20 C -0.024 4.024 21 N -0.141 5.141 22 H 0.068 0.932 23 H 0.074 0.926 24 H 0.071 0.929 25 H 0.103 0.897 26 H 0.082 0.918 27 H 0.097 0.903 28 H 0.150 0.850 29 H 0.184 0.816 30 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 3.738 10.303 5.888 12.442 hybrid contribution -1.011 -1.389 -0.920 1.948 sum 2.727 8.915 4.968 10.563 Atomic orbital electron populations 1.21482 0.94081 1.01604 1.01158 1.20789 0.97184 0.92461 1.02701 1.19771 0.92741 0.95410 0.90161 1.19318 1.04422 0.93923 0.93550 1.17668 0.92800 0.94052 0.88716 1.18948 1.16196 0.92298 1.20537 0.90022 1.26426 0.96000 0.98583 0.94750 1.69710 1.24385 1.24830 1.30162 0.85771 0.76600 0.80901 0.79745 1.19504 1.21768 1.16976 1.24328 1.27807 1.02486 1.02071 1.81592 1.69286 1.14938 0.94898 1.23342 1.03516 0.97268 0.99696 1.20428 1.01595 1.01363 0.88255 1.20898 0.95843 0.90672 0.99561 1.15721 1.11059 0.95303 0.85278 1.25569 0.92188 0.92342 0.92289 1.81199 1.11045 1.09483 1.12370 0.93206 0.92576 0.92879 0.89740 0.91775 0.90325 0.85017 0.81585 0.81106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.71 9.61 71.98 0.69 -4.02 16 2 C -0.09 -3.53 5.05 29.85 0.15 -3.38 16 3 C 0.02 0.86 5.22 -19.20 -0.10 0.76 16 4 C -0.10 -4.08 5.98 -20.27 -0.12 -4.20 16 5 C 0.08 3.57 5.10 -20.88 -0.11 3.46 16 6 C -0.45 -22.46 7.10 23.25 0.17 -22.30 16 7 H 0.08 4.36 5.47 -2.91 -0.02 4.34 16 8 C 0.05 2.79 5.52 85.18 0.47 3.26 16 9 N -0.86 -45.48 13.94 21.81 0.30 -45.18 16 10 Si 0.94 41.71 24.68 68.60 1.69 43.40 16 11 H -0.27 -11.60 6.77 99.48 0.67 -10.93 16 12 H -0.29 -12.49 7.11 99.48 0.71 -11.78 16 13 H -0.25 -10.89 6.57 99.48 0.65 -10.24 16 14 C -0.43 -18.78 7.78 67.39 0.52 -18.25 16 15 S 0.13 4.38 22.96 -56.49 -1.30 3.08 16 16 C -0.12 -4.08 6.45 23.04 0.15 -3.93 16 17 C -0.09 -2.28 10.00 22.24 0.22 -2.06 16 18 C -0.05 -1.07 9.68 22.24 0.22 -0.86 16 19 C -0.07 -1.97 5.73 -21.40 -0.12 -2.09 16 20 C 0.29 8.83 13.65 88.33 1.21 10.04 16 21 N -0.46 -15.41 18.54 19.00 0.35 -15.05 16 22 H 0.05 2.12 7.06 -2.39 -0.02 2.10 16 23 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 24 H 0.05 1.77 8.14 -2.38 -0.02 1.75 16 25 H 0.08 3.58 4.84 -2.39 -0.01 3.57 16 26 H 0.06 2.21 6.83 -2.39 -0.02 2.19 16 27 H 0.29 14.03 8.30 -92.71 -0.77 13.26 16 28 H 0.13 5.92 5.19 -2.91 -0.02 5.90 16 29 H 0.17 2.78 8.06 -2.91 -0.02 2.76 16 30 H 0.17 2.55 8.06 -2.91 -0.02 2.53 16 Total: -1.00 -55.36 267.53 5.50 -49.86 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: 1.10 Total: 7.46 kcal Atomic # 6 Polarization: -46.92 SS G_CDS: 3.34 Total: -43.58 kcal Atomic # 7 Polarization: -60.89 SS G_CDS: 0.66 Total: -60.23 kcal Atomic # 14 Polarization: 41.71 SS G_CDS: 1.69 Total: 43.40 kcal Atomic # 16 Polarization: 4.38 SS G_CDS: -1.30 Total: 3.08 kcal Total: -55.36 5.50 -49.86 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396220802.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.909 kcal (2) G-P(sol) polarization free energy of solvation -55.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.857 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds