Wall clock time and date at job start Mon Mar 30 2020 06:42:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50701 * 109.47369 * 2 1 4 4 C 1.36222 * 119.90434 * 100.01642 * 3 2 1 5 5 C 1.40051 * 120.71332 * 179.97438 * 4 3 2 6 6 S 1.75824 * 130.07121 * 180.02562 * 5 4 3 7 7 C 1.69963 * 93.26518 * 179.97438 * 6 5 4 8 8 C 1.36406 * 112.02162 * 359.97438 * 7 6 5 9 9 C 1.40752 * 123.29588 * 180.02562 * 8 7 6 10 10 H 1.08005 * 119.99305 * 157.26306 * 9 8 7 11 11 C 1.39760 * 120.00543 * 337.26665 * 9 8 7 12 12 N 1.31047 * 119.99797 * 160.60067 * 11 9 8 13 13 Si 1.86798 * 119.99947 * 340.60090 * 11 9 8 14 14 H 1.48493 * 109.47147 * 94.05435 * 13 11 9 15 15 H 1.48501 * 109.46930 * 214.05868 * 13 11 9 16 16 H 1.48500 * 109.46945 * 334.05730 * 13 11 9 17 17 C 1.39623 * 119.81283 * 0.03114 * 5 4 3 18 18 C 1.40161 * 119.32727 * 359.97438 * 17 5 4 19 19 C 1.39037 * 120.04660 * 359.97438 * 18 17 5 20 20 C 1.43205 * 120.03942 * 180.29525 * 19 18 17 21 21 N 3.55788 * 86.01729 * 287.42516 * 2 1 3 22 22 H 1.08996 * 109.47333 * 299.99547 * 1 2 3 23 23 H 1.08999 * 109.47409 * 59.99780 * 1 2 3 24 24 H 1.09003 * 109.47178 * 179.97438 * 1 2 3 25 25 H 1.09008 * 109.47109 * 240.00779 * 2 1 3 26 26 H 1.08999 * 109.47409 * 120.00220 * 2 1 3 27 27 H 1.07999 * 119.64562 * 359.97438 * 4 3 2 28 28 H 1.07998 * 123.98580 * 179.97438 * 7 6 5 29 29 H 0.97003 * 119.99246 * 180.02562 * 12 11 9 30 30 H 1.07994 * 119.97649 * 180.02562 * 18 17 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.4524 1.9926 1.1629 5 6 2.9230 3.3116 1.1822 6 16 3.5178 4.2815 2.5227 7 6 3.8134 5.6355 1.5388 8 6 3.4869 5.4015 0.2352 9 6 3.6371 6.3614 -0.7832 10 1 3.7227 6.0471 -1.8130 11 6 3.6754 7.7210 -0.4620 12 7 4.1829 8.5808 -1.3109 13 14 3.0031 8.3127 1.1773 14 1 4.1080 8.3905 2.1664 15 1 2.3956 9.6571 1.0070 16 1 1.9712 7.3610 1.6617 17 6 2.9629 4.0518 -0.0010 18 6 2.5299 3.4604 -1.1957 19 6 2.0669 2.1494 -1.1956 20 6 1.6304 1.5433 -2.4175 21 7 1.2828 1.0629 -3.3864 22 1 -0.3634 0.5137 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0277 -0.0005 25 1 1.8933 -0.5137 -0.8901 26 1 1.8933 -0.5139 0.8899 27 1 2.4222 1.4228 2.0798 28 1 4.2126 6.5706 1.9028 29 1 4.2098 9.5244 -1.0877 30 1 2.5566 4.0232 -2.1170 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396220894.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:33 Heat of formation + Delta-G solvation = 45.769933 kcal Electronic energy + Delta-G solvation = -15717.896771 eV Core-core repulsion = 13182.488088 eV Total energy + Delta-G solvation = -2535.408683 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.057 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.45946 -36.54058 -35.43830 -33.61376 -32.12725 -30.78202 -28.39885 -26.20482 -24.14589 -22.94884 -21.31594 -20.39180 -17.73983 -17.11810 -16.52835 -15.67942 -15.06922 -14.46686 -13.95788 -13.70666 -13.55692 -13.41868 -12.89279 -12.85976 -12.65312 -12.50195 -12.19253 -12.05933 -11.75311 -11.32910 -11.06336 -11.00619 -10.70950 -10.38646 -10.11137 -9.82701 -9.74496 -9.35159 -8.86560 -7.72468 -7.12306 -7.06994 -4.59010 1.10588 1.52496 2.47119 2.86533 2.97960 3.06930 3.11409 3.26566 3.45396 3.53178 3.92200 4.22233 4.27185 4.85419 4.99159 5.00171 5.30408 5.38536 5.57635 5.67284 5.73180 5.89726 5.95755 6.05852 6.22164 6.36278 6.48371 6.57237 6.73024 6.83058 7.09831 7.30602 7.45698 7.80660 8.11862 8.26501 8.61612 9.90726 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.025329 B = 0.007019 C = 0.005828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.184952 B = 3988.374005 C = 4803.593522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.084 4.084 3 C -0.036 4.036 4 C -0.098 4.098 5 C -0.106 4.106 6 S 0.084 5.916 7 C -0.463 4.463 8 C 0.090 3.910 9 C -0.415 4.415 10 H 0.093 0.907 11 C 0.086 3.914 12 N -0.799 5.799 13 Si 0.919 3.081 14 H -0.272 1.272 15 H -0.294 1.294 16 H -0.240 1.240 17 C -0.072 4.072 18 C -0.005 4.005 19 C -0.067 4.067 20 C 0.275 3.725 21 N -0.447 5.447 22 H 0.060 0.940 23 H 0.053 0.947 24 H 0.056 0.944 25 H 0.069 0.931 26 H 0.076 0.924 27 H 0.125 0.875 28 H 0.139 0.861 29 H 0.288 0.712 30 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.687 -9.178 5.913 11.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.122 4.122 3 C -0.042 4.042 4 C -0.122 4.122 5 C -0.223 4.223 6 S 0.349 5.651 7 C -0.598 4.598 8 C 0.081 3.919 9 C -0.446 4.446 10 H 0.111 0.889 11 C -0.135 4.135 12 N -0.422 5.422 13 Si 0.746 3.254 14 H -0.199 1.199 15 H -0.222 1.222 16 H -0.163 1.163 17 C -0.082 4.082 18 C -0.028 4.028 19 C -0.075 4.075 20 C -0.039 4.039 21 N -0.123 5.123 22 H 0.079 0.921 23 H 0.072 0.928 24 H 0.075 0.925 25 H 0.087 0.913 26 H 0.095 0.905 27 H 0.143 0.857 28 H 0.156 0.844 29 H 0.098 0.902 30 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -3.888 -9.764 5.848 12.027 hybrid contribution -0.104 1.225 -0.557 1.349 sum -3.992 -8.539 5.292 10.810 Atomic orbital electron populations 1.21743 0.94692 1.01524 1.02428 1.20551 0.96303 0.92479 1.02869 1.19144 0.98205 0.95381 0.91422 1.19837 1.02089 0.92890 0.97382 1.23031 1.03175 0.97634 0.98497 1.81773 1.67901 1.05171 1.10221 1.23623 1.33784 1.04397 0.97951 1.17380 0.92121 0.89889 0.92507 1.18977 1.40601 0.89663 0.95319 0.88901 1.26153 0.91773 0.96644 0.98899 1.69777 1.30860 1.04752 1.36815 0.86118 0.81136 0.77220 0.80937 1.19871 1.22184 1.16293 1.19362 1.01674 0.95230 0.91955 1.20926 0.92468 0.91588 0.97803 1.15516 1.10333 0.94521 0.87176 1.25670 0.92741 0.92878 0.92619 1.81171 1.10845 1.09317 1.10964 0.92103 0.92781 0.92531 0.91273 0.90506 0.85740 0.84352 0.90154 0.84923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 9.84 37.15 0.37 -1.24 16 2 C -0.08 -0.98 5.54 -27.89 -0.15 -1.13 16 3 C -0.04 -0.53 5.13 -104.66 -0.54 -1.06 16 4 C -0.10 -1.49 9.61 -39.63 -0.38 -1.87 16 5 C -0.11 -1.99 6.45 -38.39 -0.25 -2.23 16 6 S 0.08 1.61 22.96 -107.50 -2.47 -0.86 16 7 C -0.46 -10.60 8.08 30.07 0.24 -10.36 16 8 C 0.09 2.12 5.33 -106.19 -0.57 1.56 16 9 C -0.42 -10.52 9.57 -38.06 -0.36 -10.89 16 10 H 0.09 2.42 7.89 -52.48 -0.41 2.00 16 11 C 0.09 2.16 5.45 -17.32 -0.09 2.06 16 12 N -0.80 -20.41 13.94 55.54 0.77 -19.64 16 13 Si 0.92 20.29 24.56 -169.99 -4.17 16.12 16 14 H -0.27 -5.93 6.66 56.52 0.38 -5.55 16 15 H -0.29 -6.28 7.11 56.52 0.40 -5.88 16 16 H -0.24 -5.40 6.77 56.52 0.38 -5.01 16 17 C -0.07 -1.49 6.02 -105.24 -0.63 -2.13 16 18 C -0.01 -0.10 9.57 -38.56 -0.37 -0.46 16 19 C -0.07 -1.10 5.72 -106.99 -0.61 -1.71 16 20 C 0.27 4.50 13.20 -22.47 -0.30 4.20 16 21 N -0.45 -7.80 18.54 41.84 0.78 -7.02 16 22 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 23 H 0.05 0.67 7.39 -51.93 -0.38 0.28 16 24 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.07 0.82 7.46 -51.92 -0.39 0.43 16 26 H 0.08 0.74 7.97 -51.93 -0.41 0.32 16 27 H 0.12 1.55 8.00 -52.49 -0.42 1.13 16 28 H 0.14 3.25 4.35 -52.49 -0.23 3.03 16 29 H 0.29 6.68 8.30 -40.82 -0.34 6.34 16 30 H 0.13 2.38 7.89 -52.49 -0.41 1.97 16 LS Contribution 275.57 15.07 4.15 4.15 Total: -1.00 -25.86 275.57 -7.27 -33.13 By element: Atomic # 1 Polarization: 2.07 SS G_CDS: -2.69 Total: -0.62 kcal Atomic # 6 Polarization: -21.62 SS G_CDS: -3.65 Total: -25.26 kcal Atomic # 7 Polarization: -28.21 SS G_CDS: 1.55 Total: -26.66 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -4.17 Total: 16.12 kcal Atomic # 16 Polarization: 1.61 SS G_CDS: -2.47 Total: -0.86 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -25.86 -7.27 -33.13 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396220894.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.904 kcal (2) G-P(sol) polarization free energy of solvation -25.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.134 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds