Wall clock time and date at job start Mon Mar 30 2020 06:42:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50701 * 109.47369 * 2 1 4 4 C 1.36222 * 119.90434 * 100.01642 * 3 2 1 5 5 C 1.40051 * 120.71332 * 179.97438 * 4 3 2 6 6 S 1.75824 * 130.07121 * 180.02562 * 5 4 3 7 7 C 1.69963 * 93.26518 * 179.97438 * 6 5 4 8 8 C 1.36406 * 112.02162 * 359.97438 * 7 6 5 9 9 C 1.40752 * 123.29588 * 180.02562 * 8 7 6 10 10 H 1.08005 * 119.99305 * 157.26306 * 9 8 7 11 11 C 1.39760 * 120.00543 * 337.26665 * 9 8 7 12 12 N 1.31047 * 119.99797 * 160.60067 * 11 9 8 13 13 Si 1.86798 * 119.99947 * 340.60090 * 11 9 8 14 14 H 1.48493 * 109.47147 * 94.05435 * 13 11 9 15 15 H 1.48501 * 109.46930 * 214.05868 * 13 11 9 16 16 H 1.48500 * 109.46945 * 334.05730 * 13 11 9 17 17 C 1.39623 * 119.81283 * 0.03114 * 5 4 3 18 18 C 1.40161 * 119.32727 * 359.97438 * 17 5 4 19 19 C 1.39037 * 120.04660 * 359.97438 * 18 17 5 20 20 C 1.43205 * 120.03942 * 180.29525 * 19 18 17 21 21 N 3.55788 * 86.01729 * 287.42516 * 2 1 3 22 22 H 1.08996 * 109.47333 * 299.99547 * 1 2 3 23 23 H 1.08999 * 109.47409 * 59.99780 * 1 2 3 24 24 H 1.09003 * 109.47178 * 179.97438 * 1 2 3 25 25 H 1.09008 * 109.47109 * 240.00779 * 2 1 3 26 26 H 1.08999 * 109.47409 * 120.00220 * 2 1 3 27 27 H 1.07999 * 119.64562 * 359.97438 * 4 3 2 28 28 H 1.07998 * 123.98580 * 179.97438 * 7 6 5 29 29 H 0.97003 * 119.99246 * 180.02562 * 12 11 9 30 30 H 1.07994 * 119.97649 * 180.02562 * 18 17 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.4524 1.9926 1.1629 5 6 2.9230 3.3116 1.1822 6 16 3.5178 4.2815 2.5227 7 6 3.8134 5.6355 1.5388 8 6 3.4869 5.4015 0.2352 9 6 3.6371 6.3614 -0.7832 10 1 3.7227 6.0471 -1.8130 11 6 3.6754 7.7210 -0.4620 12 7 4.1829 8.5808 -1.3109 13 14 3.0031 8.3127 1.1773 14 1 4.1080 8.3905 2.1664 15 1 2.3956 9.6571 1.0070 16 1 1.9712 7.3610 1.6617 17 6 2.9629 4.0518 -0.0010 18 6 2.5299 3.4604 -1.1957 19 6 2.0669 2.1494 -1.1956 20 6 1.6304 1.5433 -2.4175 21 7 1.2828 1.0629 -3.3864 22 1 -0.3634 0.5137 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0277 -0.0005 25 1 1.8933 -0.5137 -0.8901 26 1 1.8933 -0.5139 0.8899 27 1 2.4222 1.4228 2.0798 28 1 4.2126 6.5706 1.9028 29 1 4.2098 9.5244 -1.0877 30 1 2.5566 4.0232 -2.1170 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396220894.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:32 Heat of formation + Delta-G solvation = 33.199229 kcal Electronic energy + Delta-G solvation = -15718.441878 eV Core-core repulsion = 13182.488088 eV Total energy + Delta-G solvation = -2535.953789 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.057 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.84775 -38.03445 -36.89891 -35.17650 -33.56646 -32.18942 -29.75755 -27.97160 -25.40075 -24.35913 -22.67231 -21.88054 -19.31055 -18.65298 -18.24332 -17.14447 -16.56599 -15.84086 -15.29494 -15.21048 -14.90196 -14.74759 -14.33012 -14.23137 -14.11076 -13.98177 -13.62101 -13.34337 -13.20220 -12.85129 -12.68223 -12.23389 -11.85636 -11.81295 -11.72623 -11.46586 -11.36621 -11.06642 -10.36798 -9.23600 -8.97551 -8.66926 -6.45080 -0.28813 0.06075 0.98521 1.14072 1.29572 1.43831 1.57058 1.61664 1.75206 1.95371 2.11849 2.75623 2.89450 3.17504 3.70171 3.82941 4.16040 4.22896 4.46209 4.49756 4.54440 4.76510 4.88370 4.93567 5.04988 5.06786 5.13868 5.19847 5.40193 5.48005 5.51988 5.61267 5.82554 6.21626 6.42782 6.45540 6.73307 8.09451 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.025329 B = 0.007019 C = 0.005828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.184952 B = 3988.374005 C = 4803.593522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.083 4.083 3 C -0.020 4.020 4 C -0.085 4.085 5 C -0.112 4.112 6 S 0.130 5.870 7 C -0.474 4.474 8 C 0.075 3.925 9 C -0.449 4.449 10 H 0.066 0.934 11 C 0.052 3.948 12 N -0.839 5.839 13 Si 0.967 3.033 14 H -0.267 1.267 15 H -0.282 1.282 16 H -0.247 1.247 17 C -0.106 4.106 18 C -0.016 4.016 19 C -0.058 4.058 20 C 0.288 3.712 21 N -0.460 5.460 22 H 0.067 0.933 23 H 0.033 0.967 24 H 0.077 0.923 25 H 0.068 0.932 26 H 0.110 0.890 27 H 0.167 0.833 28 H 0.129 0.871 29 H 0.295 0.705 30 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.691 -11.953 8.171 15.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.121 4.121 3 C -0.025 4.025 4 C -0.109 4.109 5 C -0.229 4.229 6 S 0.395 5.605 7 C -0.609 4.609 8 C 0.066 3.934 9 C -0.481 4.481 10 H 0.084 0.916 11 C -0.165 4.165 12 N -0.465 5.465 13 Si 0.791 3.209 14 H -0.193 1.193 15 H -0.209 1.209 16 H -0.170 1.170 17 C -0.116 4.116 18 C -0.039 4.039 19 C -0.066 4.066 20 C -0.026 4.026 21 N -0.137 5.137 22 H 0.086 0.914 23 H 0.052 0.948 24 H 0.096 0.904 25 H 0.087 0.913 26 H 0.128 0.872 27 H 0.184 0.816 28 H 0.147 0.853 29 H 0.106 0.894 30 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -4.894 -12.551 8.097 15.718 hybrid contribution 0.175 1.851 -1.279 2.257 sum -4.719 -10.700 6.819 13.537 Atomic orbital electron populations 1.21752 0.93998 1.02784 1.01819 1.20679 0.96715 0.90114 1.04558 1.19568 0.96031 0.96743 0.90179 1.20253 1.00127 0.91383 0.99136 1.23296 1.03271 0.98904 0.97472 1.81420 1.67766 1.02696 1.08631 1.23903 1.32337 1.05815 0.98830 1.17611 0.92066 0.91227 0.92514 1.19005 1.43441 0.90824 0.94782 0.91616 1.26768 0.91733 0.96567 1.01387 1.69804 1.32846 1.05360 1.38495 0.85399 0.80426 0.77066 0.77962 1.19305 1.20888 1.16993 1.19307 1.03918 0.94641 0.93734 1.20871 0.93326 0.92603 0.97061 1.15584 1.09316 0.93654 0.88021 1.25572 0.92297 0.92412 0.92347 1.81189 1.11241 1.10004 1.11226 0.91353 0.94785 0.90442 0.91303 0.87196 0.81595 0.85337 0.89437 0.85959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.58 9.84 71.98 0.71 -1.87 16 2 C -0.08 -1.53 5.54 29.85 0.17 -1.36 16 3 C -0.02 -0.50 5.13 -19.89 -0.10 -0.60 16 4 C -0.09 -2.23 9.61 22.24 0.21 -2.01 16 5 C -0.11 -3.93 6.45 23.04 0.15 -3.78 16 6 S 0.13 4.66 22.96 -56.49 -1.30 3.36 16 7 C -0.47 -21.63 8.08 67.39 0.54 -21.08 16 8 C 0.08 3.64 5.33 -20.88 -0.11 3.53 16 9 C -0.45 -24.08 9.57 23.25 0.22 -23.86 16 10 H 0.07 3.72 7.89 -2.91 -0.02 3.70 16 11 C 0.05 2.72 5.45 85.18 0.46 3.18 16 12 N -0.84 -44.94 13.94 21.81 0.30 -44.64 16 13 Si 0.97 42.51 24.56 68.60 1.68 44.19 16 14 H -0.27 -11.37 6.66 99.48 0.66 -10.70 16 15 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 16 H -0.25 -10.95 6.77 99.48 0.67 -10.28 16 17 C -0.11 -4.41 6.02 -20.27 -0.12 -4.53 16 18 C -0.02 -0.60 9.57 22.93 0.22 -0.38 16 19 C -0.06 -1.80 5.72 -21.40 -0.12 -1.92 16 20 C 0.29 9.01 13.20 88.33 1.17 10.17 16 21 N -0.46 -15.48 18.54 19.01 0.35 -15.13 16 22 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 23 H 0.03 0.73 7.39 -2.39 -0.02 0.71 16 24 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 25 H 0.07 1.33 7.46 -2.38 -0.02 1.31 16 26 H 0.11 1.39 7.97 -2.39 -0.02 1.37 16 27 H 0.17 3.03 8.00 -2.91 -0.02 3.01 16 28 H 0.13 6.04 4.35 -2.91 -0.01 6.03 16 29 H 0.30 14.24 8.30 -92.71 -0.77 13.48 16 30 H 0.12 4.68 7.89 -2.91 -0.02 4.66 16 Total: -1.00 -57.79 275.57 5.54 -52.25 By element: Atomic # 1 Polarization: 3.37 SS G_CDS: 1.10 Total: 4.47 kcal Atomic # 6 Polarization: -47.91 SS G_CDS: 3.39 Total: -44.52 kcal Atomic # 7 Polarization: -60.42 SS G_CDS: 0.66 Total: -59.76 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 1.68 Total: 44.19 kcal Atomic # 16 Polarization: 4.66 SS G_CDS: -1.30 Total: 3.36 kcal Total: -57.79 5.54 -52.25 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396220894.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.452 kcal (2) G-P(sol) polarization free energy of solvation -57.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.253 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds