Wall clock time and date at job start Mon Mar 30 2020 06:45:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50696 * 109.46753 * 2 1 4 4 C 1.38204 * 119.99530 * 265.02125 * 3 2 1 5 5 C 1.37661 * 120.48102 * 180.02562 * 4 3 2 6 6 C 1.40552 * 120.66617 * 359.97230 * 5 4 3 7 7 C 1.46702 * 129.48510 * 180.02562 * 6 5 4 8 8 C 1.40795 * 123.29447 * 0.02562 * 7 6 5 9 9 H 1.07997 * 120.00187 * 337.32559 * 8 7 6 10 10 C 1.39753 * 119.99791 * 157.32345 * 8 7 6 11 11 N 1.31048 * 119.99806 * 160.59384 * 10 8 7 12 12 Si 1.86799 * 120.00192 * 340.59975 * 10 8 7 13 13 H 1.48504 * 109.47148 * 94.05730 * 12 10 8 14 14 H 1.48493 * 109.47331 * 214.05736 * 12 10 8 15 15 H 1.48497 * 109.47072 * 334.05896 * 12 10 8 16 16 C 1.36397 * 113.40736 * 180.02562 * 7 6 5 17 17 S 1.69979 * 111.95112 * 359.95203 * 16 7 6 18 18 C 1.39253 * 119.31653 * 0.02880 * 6 5 4 19 19 C 1.39198 * 119.99224 * 85.00681 * 3 2 1 20 20 C 1.43199 * 119.99912 * 359.71602 * 19 3 2 21 21 N 3.55022 * 90.23210 * 74.15928 * 2 1 3 22 22 H 1.08999 * 109.47354 * 299.99601 * 1 2 3 23 23 H 1.08999 * 109.47180 * 59.99901 * 1 2 3 24 24 H 1.09004 * 109.46812 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.46501 * 240.00372 * 2 1 3 26 26 H 1.08998 * 109.46906 * 120.00826 * 2 1 3 27 27 H 1.07997 * 119.76215 * 0.02562 * 4 3 2 28 28 H 1.08001 * 119.67024 * 179.97438 * 5 4 3 29 29 H 0.96994 * 120.00135 * 179.97438 * 11 10 8 30 30 H 1.08011 * 124.02600 * 179.97438 * 16 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3605 2.0376 -1.1924 5 6 2.8207 3.3350 -1.2040 6 6 2.9645 4.0553 -0.0057 7 6 3.4309 5.4300 0.2061 8 6 3.8283 6.2815 -0.8424 9 1 4.1511 5.8638 -1.7845 10 6 3.8049 7.6674 -0.6639 11 7 4.5083 8.4416 -1.4534 12 14 2.7712 8.4163 0.6999 13 1 3.6121 8.6110 1.9084 14 1 2.2363 9.7273 0.2526 15 1 1.6435 7.5058 1.0231 16 6 3.4418 5.8024 1.5182 17 16 2.9051 4.5527 2.5378 18 6 2.6367 3.4432 1.2013 19 6 2.1652 2.1118 1.2010 20 6 1.8190 1.4746 2.4358 21 7 1.5444 0.9691 3.4154 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8933 -0.5138 -0.8901 26 1 1.8933 -0.5140 0.8899 27 1 2.2551 1.4979 -2.1219 28 1 3.0737 3.8041 -2.1433 29 1 4.4918 9.4035 -1.3298 30 1 3.7541 6.7755 1.8677 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396221825.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:07 Heat of formation + Delta-G solvation = 33.494484 kcal Electronic energy + Delta-G solvation = -15781.711813 eV Core-core repulsion = 13245.770827 eV Total energy + Delta-G solvation = -2535.940986 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.057 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.79085 -38.02167 -36.92859 -35.19418 -33.50455 -32.23663 -29.77932 -27.91447 -25.20708 -24.53985 -22.61970 -21.84739 -19.65797 -18.72504 -17.76980 -17.09954 -16.60088 -15.81108 -15.71043 -15.33293 -14.89769 -14.64047 -14.22257 -14.18338 -14.08619 -13.99096 -13.69605 -13.27449 -13.10138 -12.82108 -12.70817 -12.24031 -11.94020 -11.80250 -11.74776 -11.50638 -11.40789 -11.09933 -10.32021 -9.25385 -8.98753 -8.74398 -6.47384 -0.32171 0.09607 0.87671 1.08919 1.28532 1.40232 1.53556 1.55022 1.73824 2.03173 2.11406 2.73030 2.89452 3.18295 3.67739 3.93036 4.10311 4.33877 4.40485 4.48719 4.60079 4.63954 4.83763 4.97601 5.02890 5.08969 5.14310 5.38165 5.40027 5.45820 5.49773 5.65483 5.91744 6.22950 6.38963 6.43004 6.74842 8.07302 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.028806 B = 0.007091 C = 0.006050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.787693 B = 3947.775128 C = 4626.665461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.087 4.087 3 C -0.003 4.003 4 C -0.122 4.122 5 C -0.034 4.034 6 C -0.099 4.099 7 C 0.079 3.921 8 C -0.438 4.438 9 H 0.081 0.919 10 C 0.059 3.941 11 N -0.831 5.831 12 Si 0.959 3.041 13 H -0.275 1.275 14 H -0.278 1.278 15 H -0.253 1.253 16 C -0.476 4.476 17 S 0.074 5.926 18 C -0.101 4.101 19 C -0.038 4.038 20 C 0.279 3.721 21 N -0.453 5.453 22 H 0.031 0.969 23 H 0.072 0.928 24 H 0.078 0.922 25 H 0.116 0.884 26 H 0.064 0.936 27 H 0.179 0.821 28 H 0.140 0.860 29 H 0.296 0.704 30 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.741 -11.663 -2.222 13.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.124 4.124 3 C -0.008 4.008 4 C -0.143 4.143 5 C -0.054 4.054 6 C -0.108 4.108 7 C 0.070 3.930 8 C -0.470 4.470 9 H 0.099 0.901 10 C -0.158 4.158 11 N -0.456 5.456 12 Si 0.785 3.215 13 H -0.202 1.202 14 H -0.205 1.205 15 H -0.177 1.177 16 C -0.611 4.611 17 S 0.337 5.663 18 C -0.219 4.219 19 C -0.049 4.049 20 C -0.035 4.035 21 N -0.129 5.129 22 H 0.050 0.950 23 H 0.091 0.909 24 H 0.097 0.903 25 H 0.135 0.865 26 H 0.082 0.918 27 H 0.197 0.803 28 H 0.158 0.842 29 H 0.106 0.894 30 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -6.186 -12.152 0.735 13.656 hybrid contribution 0.422 1.707 -1.082 2.065 sum -5.764 -10.445 -0.347 11.935 Atomic orbital electron populations 1.21754 0.93681 1.02924 1.01961 1.20737 0.96934 0.90022 1.04681 1.20123 0.93834 0.96552 0.90266 1.21079 1.00945 0.93780 0.98518 1.21424 0.93568 0.93987 0.96453 1.19521 1.03326 0.94440 0.93554 1.17667 0.92112 0.91045 0.92225 1.19010 1.37375 0.90756 0.99812 0.90142 1.26606 0.94084 0.97615 0.97521 1.69775 1.31541 1.07548 1.36773 0.85517 0.80754 0.77188 0.78082 1.20168 1.20520 1.17664 1.23741 1.34981 1.05476 0.96857 1.81813 1.71522 1.04029 1.08963 1.22764 1.04312 0.96688 0.98135 1.15264 1.10478 0.91159 0.87979 1.25679 0.92596 0.92600 0.92638 1.81152 1.11023 1.09985 1.10774 0.94965 0.90910 0.90324 0.86524 0.91770 0.80323 0.84175 0.89359 0.85482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.49 9.89 71.98 0.71 -1.78 16 2 C -0.09 -1.55 5.56 29.85 0.17 -1.39 16 3 C 0.00 -0.08 5.16 -19.64 -0.10 -0.18 16 4 C -0.12 -2.86 9.63 22.13 0.21 -2.65 16 5 C -0.03 -1.09 9.85 22.70 0.22 -0.86 16 6 C -0.10 -4.10 6.02 -20.26 -0.12 -4.22 16 7 C 0.08 3.84 5.34 -20.87 -0.11 3.73 16 8 C -0.44 -22.69 9.58 23.26 0.22 -22.47 16 9 H 0.08 4.23 7.88 -2.91 -0.02 4.21 16 10 C 0.06 3.05 5.45 85.18 0.46 3.51 16 11 N -0.83 -43.12 13.94 21.80 0.30 -42.82 16 12 Si 0.96 43.14 24.56 68.60 1.68 44.82 16 13 H -0.27 -12.34 6.66 99.48 0.66 -11.68 16 14 H -0.28 -11.65 7.11 99.48 0.71 -10.94 16 15 H -0.25 -11.77 6.77 99.48 0.67 -11.10 16 16 C -0.48 -23.15 8.08 67.39 0.54 -22.61 16 17 S 0.07 3.14 22.64 -56.49 -1.28 1.86 16 18 C -0.10 -3.99 6.31 23.25 0.15 -3.84 16 19 C -0.04 -1.26 5.77 -21.07 -0.12 -1.38 16 20 C 0.28 9.36 13.32 88.33 1.18 10.53 16 21 N -0.45 -15.98 18.54 19.00 0.35 -15.63 16 22 H 0.03 0.69 7.88 -2.39 -0.02 0.67 16 23 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 24 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 25 H 0.12 1.35 8.05 -2.38 -0.02 1.33 16 26 H 0.06 1.28 7.26 -2.39 -0.02 1.26 16 27 H 0.18 2.51 8.06 -2.91 -0.02 2.49 16 28 H 0.14 4.21 7.88 -2.91 -0.02 4.19 16 29 H 0.30 13.90 8.30 -92.71 -0.77 13.13 16 30 H 0.13 6.36 4.35 -2.91 -0.01 6.35 16 Total: -1.00 -58.93 276.11 5.57 -53.36 By element: Atomic # 1 Polarization: 0.91 SS G_CDS: 1.10 Total: 2.00 kcal Atomic # 6 Polarization: -47.01 SS G_CDS: 3.41 Total: -43.60 kcal Atomic # 7 Polarization: -59.10 SS G_CDS: 0.66 Total: -58.45 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 1.68 Total: 44.82 kcal Atomic # 16 Polarization: 3.14 SS G_CDS: -1.28 Total: 1.86 kcal Total: -58.93 5.57 -53.36 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396221825.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.854 kcal (2) G-P(sol) polarization free energy of solvation -58.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.360 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds