Wall clock time and date at job start Mon Mar 30 2020 06:43:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50698 * 109.47195 * 2 1 4 4 C 1.37224 * 119.94875 * 100.00055 * 3 2 1 5 5 C 1.39856 * 120.66714 * 180.29584 * 4 3 2 6 6 S 1.76047 * 130.03709 * 179.72370 * 5 4 3 7 7 C 1.75439 * 91.82483 * 179.97438 * 6 5 4 8 8 C 1.39918 * 124.79901 * 179.97438 * 7 6 5 9 9 H 1.08004 * 119.99467 * 173.30255 * 8 7 6 10 10 C 1.40180 * 120.00125 * 353.30102 * 8 7 6 11 11 N 1.30759 * 119.99984 * 6.61244 * 10 8 7 12 12 Si 1.86797 * 120.00099 * 186.60996 * 10 8 7 13 13 H 1.48498 * 109.47202 * 94.98848 * 12 10 8 14 14 H 1.48498 * 109.47585 * 214.98813 * 12 10 8 15 15 H 1.48506 * 109.47074 * 334.98959 * 12 10 8 16 16 C 1.36889 * 110.39996 * 359.42924 * 7 6 5 17 17 C 1.39925 * 115.02027 * 0.74285 * 16 7 6 18 18 C 1.41554 * 128.37483 * 179.18897 * 17 16 7 19 19 C 1.38500 * 120.22820 * 180.02562 * 18 17 16 20 20 C 1.43208 * 119.91772 * 180.02562 * 19 18 17 21 21 N 3.55765 * 85.85751 * 287.46679 * 2 1 3 22 22 H 1.09011 * 109.46739 * 300.00072 * 1 2 3 23 23 H 1.08995 * 109.46785 * 59.99622 * 1 2 3 24 24 H 1.08996 * 109.47465 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47122 * 239.99693 * 2 1 3 26 26 H 1.09005 * 109.46759 * 119.99861 * 2 1 3 27 27 H 1.07996 * 119.66745 * 0.02638 * 4 3 2 28 28 H 0.96996 * 119.99602 * 179.97438 * 11 10 8 29 29 H 1.07998 * 122.49040 * 179.97438 * 16 7 6 30 30 H 1.08002 * 119.88359 * 0.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.4554 1.9978 1.1709 5 6 2.9187 3.3173 1.1893 6 16 3.5061 4.2928 2.5320 7 6 3.7925 5.6679 1.4808 8 6 4.3000 6.9022 1.9012 9 1 4.5478 7.6603 1.1730 10 6 4.4867 7.1548 3.2673 11 7 4.3104 6.1966 4.1394 12 14 4.9873 8.8602 3.8420 13 1 3.7761 9.6280 4.2277 14 1 5.8923 8.7421 5.0134 15 1 5.6914 9.5665 2.7417 16 6 3.4607 5.3586 0.1893 17 6 2.9667 4.0633 -0.0008 18 6 2.5279 3.4577 -1.2026 19 6 2.0662 2.1520 -1.1974 20 6 1.6243 1.5457 -2.4172 21 7 1.2730 1.0651 -3.3847 22 1 -0.3633 0.5139 0.8901 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 2.4263 1.4288 2.0883 28 1 4.4399 6.3713 5.0847 29 1 3.5605 6.0660 -0.6206 30 1 2.5532 4.0159 -2.1269 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396221833.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:34 Heat of formation + Delta-G solvation = 18.838805 kcal Electronic energy + Delta-G solvation = -15436.669118 eV Core-core repulsion = 12900.092614 eV Total energy + Delta-G solvation = -2536.576504 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.057 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.41454 -37.77379 -36.77221 -35.62522 -33.38218 -31.79564 -30.27835 -27.24953 -25.34399 -23.89261 -22.40871 -21.64612 -19.73874 -18.71749 -17.54025 -16.99518 -16.30345 -15.73668 -15.15152 -14.93503 -14.83883 -14.47396 -14.23944 -14.08175 -13.93311 -13.68439 -13.45654 -13.35111 -13.05333 -12.94923 -12.59655 -11.98108 -11.95935 -11.83465 -11.69985 -11.60237 -10.98729 -10.91801 -10.24275 -9.17387 -8.91706 -8.26956 -6.53859 0.00352 0.28376 1.29897 1.37151 1.40614 1.56388 1.65686 1.76148 1.88383 2.14078 2.15625 2.88023 3.00158 3.23827 3.98363 4.00694 4.30252 4.54210 4.63509 4.71062 4.77190 4.91314 4.92727 5.02934 5.08822 5.26759 5.35642 5.38926 5.49113 5.67650 5.69025 5.87524 6.05883 6.19405 6.42653 6.48826 6.57601 7.95994 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.043204 B = 0.005176 C = 0.004708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.928061 B = 5408.251853 C = 5945.721374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.073 4.073 3 C -0.103 4.103 4 C -0.052 4.052 5 C -0.253 4.253 6 S 0.140 5.860 7 C 0.024 3.976 8 C -0.413 4.413 9 H 0.102 0.898 10 C 0.021 3.979 11 N -0.796 5.796 12 Si 1.009 2.991 13 H -0.259 1.259 14 H -0.259 1.259 15 H -0.255 1.255 16 C -0.386 4.386 17 C -0.011 4.011 18 C -0.095 4.095 19 C -0.027 4.027 20 C 0.290 3.710 21 N -0.466 5.466 22 H 0.060 0.940 23 H 0.034 0.966 24 H 0.074 0.926 25 H 0.062 0.938 26 H 0.093 0.907 27 H 0.137 0.863 28 H 0.313 0.687 29 H 0.106 0.894 30 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.405 -3.210 2.484 4.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.110 4.110 3 C -0.108 4.108 4 C -0.074 4.074 5 C -0.369 4.369 6 S 0.401 5.599 7 C -0.095 4.095 8 C -0.446 4.446 9 H 0.120 0.880 10 C -0.198 4.198 11 N -0.423 5.423 12 Si 0.828 3.172 13 H -0.184 1.184 14 H -0.183 1.183 15 H -0.178 1.178 16 C -0.410 4.410 17 C -0.018 4.018 18 C -0.118 4.118 19 C -0.033 4.033 20 C -0.023 4.023 21 N -0.143 5.143 22 H 0.079 0.921 23 H 0.053 0.947 24 H 0.093 0.907 25 H 0.080 0.920 26 H 0.112 0.888 27 H 0.155 0.845 28 H 0.127 0.873 29 H 0.124 0.876 30 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -1.732 -4.239 2.756 5.344 hybrid contribution 0.202 1.370 -1.134 1.790 sum -1.529 -2.869 1.622 3.633 Atomic orbital electron populations 1.21738 0.94536 1.02278 1.01457 1.20456 0.96350 0.90981 1.03250 1.19466 1.03571 0.96977 0.90742 1.20209 0.97764 0.91710 0.97753 1.24186 1.11900 1.00196 1.00641 1.84676 1.66691 1.02483 1.06044 1.21755 0.95735 0.97091 0.94886 1.19674 1.32836 0.98172 0.93907 0.88031 1.27204 0.92352 1.04542 0.95748 1.68643 1.32680 1.35197 1.05735 0.84718 0.79255 0.74393 0.78841 1.18354 1.18332 1.17806 1.19729 1.26958 0.97958 0.96395 1.18011 0.97543 0.93595 0.92696 1.20917 1.00607 0.93344 0.96945 1.15529 1.06633 0.93880 0.87248 1.25769 0.92118 0.92127 0.92321 1.81147 1.11357 1.10132 1.11617 0.92064 0.94692 0.90739 0.91985 0.88824 0.84493 0.87303 0.87599 0.85783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.39 9.84 71.98 0.71 -2.68 16 2 C -0.07 -1.87 5.54 29.85 0.17 -1.70 16 3 C -0.10 -3.37 5.17 -19.59 -0.10 -3.47 16 4 C -0.05 -1.86 9.65 22.42 0.22 -1.65 16 5 C -0.25 -10.97 6.48 23.22 0.15 -10.82 16 6 S 0.14 6.42 20.16 -56.49 -1.14 5.29 16 7 C 0.02 1.22 6.10 22.36 0.14 1.36 16 8 C -0.41 -19.63 9.26 23.15 0.21 -19.42 16 9 H 0.10 4.61 7.86 -2.91 -0.02 4.58 16 10 C 0.02 0.89 5.49 85.32 0.47 1.36 16 11 N -0.80 -34.88 10.62 21.87 0.23 -34.64 16 12 Si 1.01 31.97 29.57 68.60 2.03 34.00 16 13 H -0.26 -8.01 7.11 99.48 0.71 -7.30 16 14 H -0.26 -7.70 7.11 99.48 0.71 -6.99 16 15 H -0.25 -7.95 7.11 99.48 0.71 -7.24 16 16 C -0.39 -18.78 10.14 22.36 0.23 -18.55 16 17 C -0.01 -0.47 5.85 -21.49 -0.13 -0.60 16 18 C -0.10 -3.74 9.77 23.15 0.23 -3.52 16 19 C -0.03 -0.95 5.72 -21.46 -0.12 -1.08 16 20 C 0.29 9.97 13.17 88.33 1.16 11.13 16 21 N -0.47 -16.63 18.54 19.01 0.35 -16.28 16 22 H 0.06 1.42 8.14 -2.38 -0.02 1.40 16 23 H 0.03 0.93 7.38 -2.39 -0.02 0.91 16 24 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 25 H 0.06 1.60 7.47 -2.39 -0.02 1.58 16 26 H 0.09 2.00 7.98 -2.38 -0.02 1.98 16 27 H 0.14 4.16 8.01 -2.91 -0.02 4.14 16 28 H 0.31 12.04 8.29 -92.71 -0.77 11.27 16 29 H 0.11 5.00 8.06 -2.91 -0.02 4.98 16 30 H 0.12 4.47 8.06 -2.91 -0.02 4.45 16 Total: -1.00 -52.06 281.78 5.97 -46.10 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: 1.17 Total: 15.17 kcal Atomic # 6 Polarization: -52.97 SS G_CDS: 3.33 Total: -49.64 kcal Atomic # 7 Polarization: -51.50 SS G_CDS: 0.58 Total: -50.92 kcal Atomic # 14 Polarization: 31.97 SS G_CDS: 2.03 Total: 34.00 kcal Atomic # 16 Polarization: 6.42 SS G_CDS: -1.14 Total: 5.29 kcal Total: -52.06 5.97 -46.10 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396221833.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.937 kcal (2) G-P(sol) polarization free energy of solvation -52.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.098 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds