Wall clock time and date at job start Mon Mar 30 2020 06:18:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.40705 * 119.95951 * 108.42915 * 3 2 1 5 5 S 1.76221 * 129.78892 * 359.97438 * 4 3 2 6 6 C 1.75420 * 91.59040 * 180.28059 * 5 4 3 7 7 C 1.32393 * 110.87643 * 359.97438 * 6 5 4 8 8 C 1.40320 * 120.85887 * 180.30432 * 4 3 2 9 9 C 1.41439 * 119.86564 * 359.74882 * 8 4 3 10 10 C 1.38346 * 121.12391 * 0.02562 * 9 8 4 11 11 C 1.46383 * 120.29299 * 179.97438 * 10 9 8 12 12 O 1.21369 * 120.00094 * 0.02562 * 11 10 9 13 13 C 1.41734 * 119.96417 * 288.25531 * 3 2 1 14 14 C 1.39745 * 120.66889 * 359.95310 * 13 3 2 15 15 H 1.07994 * 120.00352 * 136.16397 * 14 13 3 16 16 C 1.40546 * 119.99594 * 316.16070 * 14 13 3 17 17 N 1.30502 * 120.00534 * 339.43643 * 16 14 13 18 18 Si 1.86801 * 119.99512 * 159.43328 * 16 14 13 19 19 H 1.48506 * 109.46966 * 60.00587 * 18 16 14 20 20 H 1.48505 * 109.46946 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47562 * 300.00395 * 18 16 14 22 22 H 1.07998 * 124.56566 * 179.97438 * 6 5 4 23 23 H 1.07998 * 122.05044 * 179.97438 * 7 6 5 24 24 H 1.08007 * 119.43859 * 179.97438 * 9 8 4 25 25 H 1.08001 * 119.99999 * 179.97438 * 11 10 9 26 26 H 0.96999 * 120.00393 * 184.35439 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2705 0.3863 -1.1565 5 16 2.6603 0.9081 -2.7252 6 6 4.2884 1.1075 -3.3469 7 6 5.1867 0.7991 -2.4245 8 6 4.6735 0.3879 -1.1794 9 6 5.3971 0.0029 -0.0268 10 6 4.7455 -0.3789 1.1323 11 6 5.5126 -0.7745 2.3146 12 8 6.7258 -0.7681 2.2810 13 6 3.2761 -0.3837 1.1661 14 6 2.5909 -0.7646 2.3230 15 1 2.9139 -1.6306 2.8815 16 6 1.4815 -0.0204 2.7597 17 7 1.3229 1.2112 2.3584 18 14 0.2338 -0.7945 3.9145 19 1 0.9099 -1.2022 5.1723 20 1 -0.8328 0.1915 4.2237 21 1 -0.3671 -1.9878 3.2663 22 1 4.5261 1.4374 -4.3474 23 1 6.2480 0.8579 -2.6158 24 1 6.4769 0.0062 -0.0522 25 1 4.9990 -1.0713 3.2171 26 1 0.5928 1.7453 2.7086 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396221922.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:17 Heat of formation + Delta-G solvation = 21.135864 kcal Electronic energy + Delta-G solvation = -15726.506559 eV Core-core repulsion = 13054.196568 eV Total energy + Delta-G solvation = -2672.309991 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 257.025 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.94798 -37.60128 -36.01984 -34.42598 -33.21847 -30.39390 -29.55099 -26.00881 -24.21919 -22.28632 -22.06831 -19.14652 -18.37427 -17.42729 -16.16834 -15.66976 -15.38208 -14.75589 -14.00811 -13.96912 -13.56818 -13.18293 -12.96047 -12.63153 -12.17925 -12.05966 -12.02307 -11.87597 -11.53649 -11.36139 -11.00983 -10.78150 -10.43294 -10.13102 -9.97976 -9.46920 -8.95642 -8.79838 -7.68871 -7.37989 -7.10512 -5.07612 1.41293 1.59819 2.23020 2.56836 2.67120 2.84871 2.88911 2.95757 3.32180 3.57273 3.94830 4.09693 4.35742 4.99824 5.16617 5.22339 5.58084 5.84972 5.86614 6.15340 6.23437 6.28182 6.52409 6.54237 6.68236 7.01968 7.15130 7.19732 7.32243 7.75480 8.02946 8.09887 8.31386 8.83008 9.53804 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.018874 B = 0.009979 C = 0.006779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.146279 B = 2805.099081 C = 4129.335805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C 0.314 3.686 3 C -0.116 4.116 4 C -0.006 4.006 5 S 0.033 5.967 6 C -0.257 4.257 7 C -0.071 4.071 8 C -0.212 4.212 9 C 0.045 3.955 10 C -0.266 4.266 11 C 0.398 3.602 12 O -0.508 6.508 13 C 0.203 3.797 14 C -0.441 4.441 15 H 0.108 0.892 16 C 0.078 3.922 17 N -0.740 5.740 18 Si 0.912 3.088 19 H -0.257 1.257 20 H -0.272 1.272 21 H -0.255 1.255 22 H 0.153 0.847 23 H 0.130 0.870 24 H 0.120 0.880 25 H 0.098 0.902 26 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.122 -0.892 -2.297 3.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.171 5.171 2 C 0.003 3.997 3 C -0.128 4.128 4 C -0.124 4.124 5 S 0.294 5.706 6 C -0.389 4.389 7 C -0.101 4.101 8 C -0.218 4.218 9 C 0.024 3.976 10 C -0.269 4.269 11 C 0.263 3.737 12 O -0.387 6.387 13 C 0.194 3.806 14 C -0.467 4.467 15 H 0.125 0.875 16 C -0.149 4.149 17 N -0.360 5.360 18 Si 0.735 3.265 19 H -0.181 1.181 20 H -0.196 1.196 21 H -0.179 1.179 22 H 0.170 0.830 23 H 0.147 0.853 24 H 0.137 0.863 25 H 0.114 0.886 26 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 0.464 -0.418 -3.068 3.131 hybrid contribution 1.026 -0.150 0.958 1.412 sum 1.490 -0.569 -2.110 2.645 Atomic orbital electron populations 1.80934 1.12553 1.12864 1.10704 1.25173 0.92308 0.91433 0.90815 1.15206 0.83947 1.20655 0.93022 1.22574 0.95911 0.98472 0.95476 1.84145 1.08315 1.71989 1.06101 1.24635 0.95176 1.15446 1.03681 1.19843 0.99675 0.98689 0.91846 1.17658 0.91144 1.16950 0.96074 1.21107 0.98495 0.88162 0.89839 1.21425 0.93884 1.15010 0.96578 1.23559 0.87954 0.71236 0.90936 1.90439 1.17705 1.44413 1.86129 1.18097 0.88816 0.83671 0.90012 1.19603 1.08631 1.11088 1.07387 0.87460 1.26133 0.97129 0.94350 0.97298 1.69516 1.26949 1.06797 1.32714 0.86215 0.79578 0.80743 0.79993 1.18072 1.19608 1.17860 0.82967 0.85269 0.86253 0.88573 0.88928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -12.10 18.49 41.84 0.77 -11.33 15 2 C 0.31 7.55 11.23 -22.47 -0.25 7.30 15 3 C -0.12 -2.65 5.50 -105.71 -0.58 -3.24 15 4 C -0.01 -0.12 6.34 -37.87 -0.24 -0.36 15 5 S 0.03 0.62 22.93 -107.50 -2.47 -1.84 15 6 C -0.26 -4.15 11.08 28.81 0.32 -3.83 15 7 C -0.07 -1.20 10.11 -40.53 -0.41 -1.61 15 8 C -0.21 -4.18 5.86 -106.92 -0.63 -4.81 15 9 C 0.04 0.87 9.57 -38.32 -0.37 0.50 15 10 C -0.27 -5.41 6.02 -103.04 -0.62 -6.03 15 11 C 0.40 7.44 11.04 34.01 0.38 7.82 15 12 O -0.51 -10.39 17.12 5.48 0.09 -10.30 15 13 C 0.20 4.48 5.44 -104.46 -0.57 3.91 15 14 C -0.44 -9.45 7.68 -38.15 -0.29 -9.74 15 15 H 0.11 2.05 7.46 -52.49 -0.39 1.65 15 16 C 0.08 1.71 4.03 -17.25 -0.07 1.64 15 17 N -0.74 -17.13 11.27 55.58 0.63 -16.50 15 18 Si 0.91 17.10 29.61 -169.99 -5.03 12.07 15 19 H -0.26 -4.47 7.11 56.52 0.40 -4.06 15 20 H -0.27 -5.14 7.11 56.52 0.40 -4.73 15 21 H -0.25 -4.95 7.11 56.52 0.40 -4.55 15 22 H 0.15 1.98 8.06 -52.49 -0.42 1.56 15 23 H 0.13 1.79 8.06 -52.49 -0.42 1.36 15 24 H 0.12 2.12 7.58 -52.48 -0.40 1.72 15 25 H 0.10 1.58 7.05 -52.49 -0.37 1.21 15 26 H 0.30 6.52 8.29 -40.82 -0.34 6.18 15 LS Contribution 261.15 15.07 3.94 3.94 Total: -1.00 -25.53 261.15 -6.54 -32.07 By element: Atomic # 1 Polarization: 1.48 SS G_CDS: -1.14 Total: 0.34 kcal Atomic # 6 Polarization: -5.11 SS G_CDS: -3.33 Total: -8.44 kcal Atomic # 7 Polarization: -29.23 SS G_CDS: 1.40 Total: -27.83 kcal Atomic # 8 Polarization: -10.39 SS G_CDS: 0.09 Total: -10.30 kcal Atomic # 14 Polarization: 17.10 SS G_CDS: -5.03 Total: 12.07 kcal Atomic # 16 Polarization: 0.62 SS G_CDS: -2.47 Total: -1.84 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -25.53 -6.54 -32.07 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396221922.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.206 kcal (2) G-P(sol) polarization free energy of solvation -25.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.070 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds