Wall clock time and date at job start Mon Mar 30 2020 06:18:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.40705 * 119.95951 * 108.42915 * 3 2 1 5 5 S 1.76221 * 129.78892 * 359.97438 * 4 3 2 6 6 C 1.75420 * 91.59040 * 180.28059 * 5 4 3 7 7 C 1.32393 * 110.87643 * 359.97438 * 6 5 4 8 8 C 1.40320 * 120.85887 * 180.30432 * 4 3 2 9 9 C 1.41439 * 119.86564 * 359.74882 * 8 4 3 10 10 C 1.38346 * 121.12391 * 0.02562 * 9 8 4 11 11 C 1.46383 * 120.29299 * 179.97438 * 10 9 8 12 12 O 1.21369 * 120.00094 * 0.02562 * 11 10 9 13 13 C 1.41734 * 119.96417 * 288.25531 * 3 2 1 14 14 C 1.39745 * 120.66889 * 359.95310 * 13 3 2 15 15 H 1.07994 * 120.00352 * 136.16397 * 14 13 3 16 16 C 1.40546 * 119.99594 * 316.16070 * 14 13 3 17 17 N 1.30502 * 120.00534 * 339.43643 * 16 14 13 18 18 Si 1.86801 * 119.99512 * 159.43328 * 16 14 13 19 19 H 1.48506 * 109.46966 * 60.00587 * 18 16 14 20 20 H 1.48505 * 109.46946 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47562 * 300.00395 * 18 16 14 22 22 H 1.07998 * 124.56566 * 179.97438 * 6 5 4 23 23 H 1.07998 * 122.05044 * 179.97438 * 7 6 5 24 24 H 1.08007 * 119.43859 * 179.97438 * 9 8 4 25 25 H 1.08001 * 119.99999 * 179.97438 * 11 10 9 26 26 H 0.96999 * 120.00393 * 184.35439 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2705 0.3863 -1.1565 5 16 2.6603 0.9081 -2.7252 6 6 4.2884 1.1075 -3.3469 7 6 5.1867 0.7991 -2.4245 8 6 4.6735 0.3879 -1.1794 9 6 5.3971 0.0029 -0.0268 10 6 4.7455 -0.3789 1.1323 11 6 5.5126 -0.7745 2.3146 12 8 6.7258 -0.7681 2.2810 13 6 3.2761 -0.3837 1.1661 14 6 2.5909 -0.7646 2.3230 15 1 2.9139 -1.6306 2.8815 16 6 1.4815 -0.0204 2.7597 17 7 1.3229 1.2112 2.3584 18 14 0.2338 -0.7945 3.9145 19 1 0.9099 -1.2022 5.1723 20 1 -0.8328 0.1915 4.2237 21 1 -0.3671 -1.9878 3.2663 22 1 4.5261 1.4374 -4.3474 23 1 6.2480 0.8579 -2.6158 24 1 6.4769 0.0062 -0.0522 25 1 4.9990 -1.0713 3.2171 26 1 0.5928 1.7453 2.7086 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396221922.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:17 Heat of formation + Delta-G solvation = 8.678575 kcal Electronic energy + Delta-G solvation = -15727.046747 eV Core-core repulsion = 13054.196568 eV Total energy + Delta-G solvation = -2672.850179 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 257.025 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.49303 -39.14330 -37.65709 -36.13721 -34.76380 -31.99381 -31.08280 -27.56675 -25.76931 -23.85470 -23.56931 -20.61181 -19.96704 -18.97937 -17.74429 -17.18540 -16.95529 -16.25830 -15.52738 -15.45384 -15.15088 -14.70533 -14.57543 -14.19844 -13.76867 -13.68093 -13.59869 -13.48020 -13.13943 -12.93975 -12.60642 -12.26032 -11.95248 -11.61871 -11.49402 -11.06325 -10.48659 -10.35324 -9.25922 -8.98207 -8.63475 -6.71734 -0.17477 0.12021 0.72253 1.02478 1.26125 1.32122 1.42554 1.44849 1.86641 2.04051 2.13628 2.51848 2.64239 3.33448 3.56613 3.73176 4.26427 4.34049 4.49154 4.66806 4.75723 4.85358 4.93840 5.04070 5.23105 5.52148 5.58681 5.70035 5.81836 6.15394 6.43207 6.48919 6.79956 7.02559 7.93406 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.018874 B = 0.009979 C = 0.006779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.146279 B = 2805.099081 C = 4129.335805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C 0.320 3.680 3 C -0.150 4.150 4 C -0.031 4.031 5 S 0.018 5.982 6 C -0.232 4.232 7 C -0.082 4.082 8 C -0.211 4.211 9 C 0.043 3.957 10 C -0.275 4.275 11 C 0.408 3.592 12 O -0.524 6.524 13 C 0.190 3.810 14 C -0.459 4.459 15 H 0.127 0.873 16 C 0.052 3.948 17 N -0.777 5.777 18 Si 0.957 3.043 19 H -0.228 1.228 20 H -0.279 1.279 21 H -0.268 1.268 22 H 0.193 0.807 23 H 0.167 0.833 24 H 0.139 0.861 25 H 0.125 0.875 26 H 0.297 0.703 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.821 -1.084 -2.865 5.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.201 5.201 2 C 0.010 3.990 3 C -0.163 4.163 4 C -0.150 4.150 5 S 0.280 5.720 6 C -0.365 4.365 7 C -0.110 4.110 8 C -0.218 4.218 9 C 0.023 3.977 10 C -0.278 4.278 11 C 0.273 3.727 12 O -0.404 6.404 13 C 0.182 3.818 14 C -0.486 4.486 15 H 0.145 0.855 16 C -0.172 4.172 17 N -0.398 5.398 18 Si 0.777 3.223 19 H -0.151 1.151 20 H -0.204 1.204 21 H -0.193 1.193 22 H 0.210 0.790 23 H 0.185 0.815 24 H 0.157 0.843 25 H 0.142 0.858 26 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 2.174 -0.616 -3.627 4.273 hybrid contribution 0.620 -0.052 0.941 1.128 sum 2.794 -0.668 -2.686 3.933 Atomic orbital electron populations 1.80892 1.13201 1.14327 1.11687 1.25518 0.92719 0.90734 0.90038 1.15463 0.83475 1.22967 0.94366 1.22853 0.96964 0.99055 0.96089 1.84236 1.10951 1.71617 1.05225 1.25106 0.92891 1.13396 1.05089 1.20139 1.01736 0.98648 0.90474 1.18099 0.90549 1.15803 0.97338 1.21381 0.99478 0.87358 0.89531 1.21669 0.93354 1.15037 0.97701 1.23799 0.87504 0.70252 0.91107 1.90435 1.18402 1.45193 1.86332 1.18353 0.89760 0.83642 0.90068 1.19922 1.09124 1.11825 1.07748 0.85504 1.26747 0.98014 0.94287 0.98120 1.69578 1.27730 1.08025 1.34474 0.85554 0.77838 0.79174 0.79708 1.15101 1.20371 1.19283 0.79032 0.81535 0.84296 0.85839 0.89168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.52 -26.39 18.49 19.00 0.35 -26.04 15 2 C 0.32 15.77 11.23 88.33 0.99 16.76 15 3 C -0.15 -6.98 5.50 -20.57 -0.11 -7.09 15 4 C -0.03 -1.31 6.34 23.38 0.15 -1.16 15 5 S 0.02 0.67 22.93 -56.49 -1.30 -0.62 15 6 C -0.23 -6.66 11.08 66.72 0.74 -5.92 15 7 C -0.08 -2.44 10.11 21.80 0.22 -2.22 15 8 C -0.21 -7.90 5.86 -21.35 -0.13 -8.03 15 9 C 0.04 1.59 9.57 23.08 0.22 1.81 15 10 C -0.27 -10.85 6.02 -18.84 -0.11 -10.97 15 11 C 0.41 14.50 11.04 69.94 0.77 15.27 15 12 O -0.52 -20.36 17.12 -3.31 -0.06 -20.42 15 13 C 0.19 8.41 5.44 -19.76 -0.11 8.30 15 14 C -0.46 -19.60 7.68 23.20 0.18 -19.42 15 15 H 0.13 4.70 7.46 -2.91 -0.02 4.67 15 16 C 0.05 2.28 4.03 85.45 0.34 2.62 15 17 N -0.78 -36.80 11.27 21.93 0.25 -36.55 15 18 Si 0.96 34.86 29.61 68.60 2.03 36.89 15 19 H -0.23 -7.24 7.11 99.48 0.71 -6.53 15 20 H -0.28 -10.36 7.11 99.48 0.71 -9.66 15 21 H -0.27 -10.26 7.11 99.48 0.71 -9.56 15 22 H 0.19 3.97 8.06 -2.91 -0.02 3.94 15 23 H 0.17 3.75 8.06 -2.91 -0.02 3.73 15 24 H 0.14 4.54 7.58 -2.91 -0.02 4.52 15 25 H 0.13 3.77 7.05 -2.91 -0.02 3.75 15 26 H 0.30 13.40 8.29 -92.71 -0.77 12.63 15 Total: -1.00 -54.95 261.15 5.68 -49.28 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: 1.24 Total: 7.50 kcal Atomic # 6 Polarization: -13.19 SS G_CDS: 3.16 Total: -10.03 kcal Atomic # 7 Polarization: -63.19 SS G_CDS: 0.60 Total: -62.59 kcal Atomic # 8 Polarization: -20.36 SS G_CDS: -0.06 Total: -20.42 kcal Atomic # 14 Polarization: 34.86 SS G_CDS: 2.03 Total: 36.89 kcal Atomic # 16 Polarization: 0.67 SS G_CDS: -1.30 Total: -0.62 kcal Total: -54.95 5.68 -49.28 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396221922.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.957 kcal (2) G-P(sol) polarization free energy of solvation -54.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.278 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds