Wall clock time and date at job start Mon Mar 30 2020 06:42:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50705 * 109.46876 * 2 1 4 4 S 1.70034 * 123.90237 * 270.14594 * 3 2 1 5 5 C 1.75773 * 92.96739 * 180.17752 * 4 3 2 6 6 C 1.39176 * 109.85634 * 359.83051 * 5 4 3 7 7 C 1.40858 * 119.29603 * 180.02562 * 6 5 4 8 8 C 1.37976 * 120.84074 * 359.96111 * 7 6 5 9 9 C 1.37817 * 120.66406 * 0.04017 * 8 7 6 10 10 C 1.40431 * 119.90784 * 359.97438 * 9 8 7 11 11 C 1.40931 * 120.12897 * 179.97438 * 10 9 8 12 12 H 1.08005 * 120.00057 * 204.93456 * 11 10 9 13 13 C 1.39948 * 120.00161 * 24.92512 * 11 10 9 14 14 N 1.30851 * 119.99898 * 17.88108 * 13 11 10 15 15 Si 1.86801 * 119.99801 * 197.88045 * 13 11 10 16 16 H 1.48497 * 109.47000 * 90.00569 * 15 13 11 17 17 H 1.48502 * 109.47109 * 209.99990 * 15 13 11 18 18 H 1.48491 * 109.47435 * 330.00356 * 15 13 11 19 19 C 1.33834 * 123.89835 * 90.00288 * 3 2 1 20 20 C 1.43201 * 123.02082 * 0.03301 * 19 3 2 21 21 N 3.69035 * 96.48697 * 71.30898 * 2 1 3 22 22 H 1.09009 * 109.46785 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.46833 * 299.99346 * 1 2 3 24 24 H 1.09001 * 109.47487 * 59.99982 * 1 2 3 25 25 H 1.08995 * 109.46904 * 240.00171 * 2 1 3 26 26 H 1.08996 * 109.46834 * 120.00283 * 2 1 3 27 27 H 1.07999 * 119.58403 * 179.97438 * 7 6 5 28 28 H 1.07992 * 119.67058 * 180.02562 * 8 7 6 29 29 H 1.07998 * 120.04324 * 179.97438 * 9 8 7 30 30 H 0.97003 * 119.99802 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 16 2.3450 2.3163 -1.4113 5 6 2.8548 3.7352 -0.5077 6 6 2.7669 3.4826 0.8581 7 6 3.1297 4.4925 1.7706 8 6 3.5696 5.7225 1.3263 9 6 3.6630 5.9903 -0.0224 10 6 3.3087 5.0050 -0.9582 11 6 3.4019 5.2741 -2.3384 12 1 2.7864 4.7279 -3.0379 13 6 4.2920 6.2492 -2.8027 14 7 5.2704 6.6597 -2.0370 15 14 4.0832 6.9647 -4.5156 16 1 3.2005 8.1570 -4.4497 17 1 5.4102 7.3603 -5.0520 18 1 3.4728 5.9457 -5.4067 19 6 2.2812 2.1246 1.1109 20 6 2.0948 1.5951 2.4282 21 7 1.9470 1.1751 3.4733 22 1 -0.3633 -1.0278 -0.0005 23 1 -0.3633 0.5137 0.8901 24 1 -0.3634 0.5138 -0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 3.0629 4.3017 2.8315 28 1 3.8433 6.4830 2.0425 29 1 4.0083 6.9567 -0.3591 30 1 5.8876 7.3353 -2.3589 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396222340.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:46 Heat of formation + Delta-G solvation = 33.031137 kcal Electronic energy + Delta-G solvation = -15701.028142 eV Core-core repulsion = 13165.067063 eV Total energy + Delta-G solvation = -2535.961079 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.057 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.16886 -38.18411 -36.57207 -35.49769 -33.42608 -31.85468 -29.32167 -27.45302 -25.77736 -23.96437 -22.69303 -21.77588 -19.50222 -18.31120 -17.69595 -16.77422 -16.63292 -15.83763 -15.37642 -15.24065 -14.83439 -14.52633 -14.37445 -14.03101 -13.95458 -13.61053 -13.40844 -13.15514 -12.86378 -12.74921 -12.38163 -12.27703 -12.11620 -11.82584 -11.73708 -11.52821 -11.18153 -11.08428 -10.05251 -9.13919 -8.75534 -8.51024 -6.37482 -0.19816 0.75824 0.79815 1.04161 1.27551 1.43085 1.54938 1.55948 1.67098 2.19873 2.36282 2.74243 3.18096 3.54409 3.58381 4.13655 4.27223 4.34952 4.56681 4.63374 4.72341 4.85741 4.97035 5.01983 5.10295 5.20308 5.29664 5.34177 5.45837 5.68228 5.88459 6.08261 6.17091 6.46398 6.56370 6.77743 6.86682 8.23796 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.026748 B = 0.006927 C = 0.005665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.542589 B = 4041.104913 C = 4941.417927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.062 4.062 3 C -0.126 4.126 4 S 0.212 5.788 5 C -0.267 4.267 6 C -0.021 4.021 7 C -0.237 4.237 8 C -0.077 4.077 9 C -0.202 4.202 10 C 0.129 3.871 11 C -0.477 4.477 12 H 0.087 0.913 13 C 0.041 3.959 14 N -0.807 5.807 15 Si 0.981 3.019 16 H -0.262 1.262 17 H -0.268 1.268 18 H -0.253 1.253 19 C -0.089 4.089 20 C 0.305 3.695 21 N -0.467 5.467 22 H 0.087 0.913 23 H 0.041 0.959 24 H 0.067 0.933 25 H 0.108 0.892 26 H 0.078 0.922 27 H 0.099 0.901 28 H 0.117 0.883 29 H 0.113 0.887 30 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.738 -6.318 -3.996 8.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.101 4.101 3 C -0.249 4.249 4 S 0.482 5.518 5 C -0.382 4.382 6 C -0.028 4.028 7 C -0.259 4.259 8 C -0.096 4.096 9 C -0.225 4.225 10 C 0.123 3.877 11 C -0.505 4.505 12 H 0.105 0.895 13 C -0.177 4.177 14 N -0.431 5.431 15 Si 0.801 3.199 16 H -0.187 1.187 17 H -0.193 1.193 18 H -0.176 1.176 19 C -0.109 4.109 20 C -0.010 4.010 21 N -0.145 5.145 22 H 0.106 0.894 23 H 0.060 0.940 24 H 0.086 0.914 25 H 0.126 0.874 26 H 0.097 0.903 27 H 0.117 0.883 28 H 0.135 0.865 29 H 0.131 0.869 30 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -4.870 -7.167 -3.951 9.523 hybrid contribution 0.545 1.313 0.974 1.723 sum -4.325 -5.854 -2.977 7.864 Atomic orbital electron populations 1.21782 0.92643 1.03515 1.02241 1.20434 0.97553 0.87346 1.04762 1.24259 1.00791 1.02236 0.97567 1.82197 1.64237 1.01487 1.03908 1.22868 1.19659 1.00151 0.95522 1.18617 0.99499 0.91732 0.92968 1.20198 1.14197 0.94729 0.96738 1.20763 0.97181 0.95933 0.95705 1.21135 1.09757 0.99592 0.91983 1.17275 0.88242 0.87826 0.94313 1.19791 1.19811 1.18512 0.92426 0.89536 1.26772 0.92420 0.94589 1.03936 1.69874 1.10192 1.23322 1.39700 0.85199 0.78918 0.79342 0.76428 1.18651 1.19302 1.17625 1.15676 1.14531 0.94310 0.86377 1.25147 0.91889 0.91942 0.92053 1.81127 1.12010 1.10269 1.11074 0.89369 0.94015 0.91415 0.87383 0.90324 0.88255 0.86465 0.86930 0.89552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.93 9.89 71.98 0.71 -2.21 16 2 C -0.06 -1.44 5.99 29.85 0.18 -1.26 16 3 C -0.13 -4.04 5.47 24.69 0.14 -3.91 16 4 S 0.21 7.45 22.50 -56.49 -1.27 6.18 16 5 C -0.27 -12.20 6.35 23.47 0.15 -12.05 16 6 C -0.02 -0.94 6.03 -20.28 -0.12 -1.06 16 7 C -0.24 -10.66 9.88 22.85 0.23 -10.43 16 8 C -0.08 -3.50 9.98 22.11 0.22 -3.28 16 9 C -0.20 -10.08 8.67 22.70 0.20 -9.88 16 10 C 0.13 6.47 5.59 -21.11 -0.12 6.35 16 11 C -0.48 -23.19 8.83 23.34 0.21 -22.98 16 12 H 0.09 3.98 7.75 -2.91 -0.02 3.96 16 13 C 0.04 1.87 5.13 85.25 0.44 2.31 16 14 N -0.81 -38.80 10.97 21.83 0.24 -38.56 16 15 Si 0.98 34.47 29.60 68.60 2.03 36.50 16 16 H -0.26 -9.02 7.11 99.48 0.71 -8.32 16 17 H -0.27 -9.05 7.11 99.48 0.71 -8.34 16 18 H -0.25 -8.56 7.11 99.48 0.71 -7.85 16 19 C -0.09 -3.37 5.82 -20.90 -0.12 -3.49 16 20 C 0.30 11.40 14.38 88.33 1.27 12.67 16 21 N -0.47 -17.90 18.54 19.00 0.35 -17.55 16 22 H 0.09 1.34 8.14 -2.38 -0.02 1.32 16 23 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 24 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 25 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 26 H 0.08 1.84 7.48 -2.39 -0.02 1.83 16 27 H 0.10 4.19 8.06 -2.91 -0.02 4.16 16 28 H 0.12 4.66 8.06 -2.91 -0.02 4.63 16 29 H 0.11 5.78 6.16 -2.91 -0.02 5.76 16 30 H 0.29 12.68 8.30 -92.71 -0.77 11.91 16 Total: -1.00 -55.28 283.31 5.89 -49.39 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: 1.17 Total: 13.28 kcal Atomic # 6 Polarization: -52.60 SS G_CDS: 3.37 Total: -49.23 kcal Atomic # 7 Polarization: -56.71 SS G_CDS: 0.59 Total: -56.12 kcal Atomic # 14 Polarization: 34.47 SS G_CDS: 2.03 Total: 36.50 kcal Atomic # 16 Polarization: 7.45 SS G_CDS: -1.27 Total: 6.18 kcal Total: -55.28 5.89 -49.39 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396222340.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.420 kcal (2) G-P(sol) polarization free energy of solvation -55.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.389 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds