Wall clock time and date at job start Mon Mar 30 2020 06:45:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50700 * 109.47081 * 2 1 4 4 C 1.40802 * 120.10270 * 269.97767 * 3 2 1 5 5 C 1.41353 * 119.95924 * 0.02562 * 4 3 2 6 6 H 1.07998 * 120.00177 * 25.96017 * 5 4 3 7 7 C 1.39844 * 120.00050 * 205.95768 * 5 4 3 8 8 N 1.30898 * 119.99864 * 15.72877 * 7 5 4 9 9 Si 1.86800 * 119.99806 * 195.72862 * 7 5 4 10 10 H 1.48499 * 109.47214 * 60.00046 * 9 7 5 11 11 H 1.48502 * 109.46650 * 179.97438 * 9 7 5 12 12 H 1.48495 * 109.47127 * 299.99711 * 9 7 5 13 13 C 1.39988 * 120.08509 * 180.02562 * 4 3 2 14 14 C 1.40498 * 120.47615 * 0.06448 * 13 4 3 15 15 C 1.45653 * 129.05008 * 179.97438 * 14 13 4 16 16 C 1.31646 * 114.90809 * 179.97438 * 15 14 13 17 17 S 1.75267 * 111.49659 * 0.02562 * 16 15 14 18 18 C 1.40024 * 119.21192 * 359.93006 * 14 13 4 19 19 C 1.38281 * 120.10605 * 89.99811 * 3 2 1 20 20 C 1.43193 * 119.83008 * 359.97438 * 19 3 2 21 21 N 3.53889 * 94.92386 * 75.84520 * 2 1 3 22 22 H 1.08993 * 109.47321 * 180.02562 * 1 2 3 23 23 H 1.08995 * 109.47280 * 300.00258 * 1 2 3 24 24 H 1.08995 * 109.46880 * 60.00242 * 1 2 3 25 25 H 1.08995 * 109.47280 * 239.99742 * 2 1 3 26 26 H 1.09007 * 109.46632 * 119.99499 * 2 1 3 27 27 H 0.97003 * 120.00030 * 180.02562 * 8 7 5 28 28 H 1.07999 * 119.76399 * 180.02562 * 13 4 3 29 29 H 1.08002 * 122.54691 * 359.96864 * 15 14 13 30 30 H 1.08000 * 124.25544 * 180.26469 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2682 2.0865 -1.2181 5 6 2.0330 1.4214 -2.4430 6 1 1.3140 0.6170 -2.4914 7 6 2.7313 1.8050 -3.5923 8 7 3.8040 2.5481 -3.4889 9 14 2.1334 1.2569 -5.2750 10 1 0.7584 1.7695 -5.5029 11 1 3.0406 1.7929 -6.3214 12 1 2.1255 -0.2266 -5.3385 13 6 2.7353 3.4061 -1.2177 14 6 2.9741 4.0771 -0.0066 15 6 3.4553 5.4345 0.2110 16 6 3.5793 5.7830 1.4744 17 16 3.1176 4.4776 2.5490 18 6 2.7378 3.4107 1.2020 19 6 2.2635 2.0748 1.1963 20 6 2.0239 1.3987 2.4356 21 7 1.8338 0.8622 3.4188 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 1.8934 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 4.2882 2.8145 -4.2861 28 1 2.9141 3.9119 -2.1550 29 1 3.6926 6.1042 -0.6024 30 1 3.9188 6.7528 1.8071 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396222350.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:11 Heat of formation + Delta-G solvation = 47.685455 kcal Electronic energy + Delta-G solvation = -16027.883590 eV Core-core repulsion = 13492.557971 eV Total energy + Delta-G solvation = -2535.325620 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.057 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -38.76060 -36.07890 -35.29994 -33.70313 -31.84644 -30.12336 -28.00057 -25.73457 -23.36729 -22.84623 -20.91221 -19.83538 -17.99739 -16.98418 -15.77573 -15.54733 -14.86517 -14.19254 -13.72487 -13.55689 -13.44669 -12.78093 -12.50963 -12.39281 -12.21716 -12.15944 -11.91558 -11.62299 -11.44637 -11.27397 -10.93594 -10.85905 -10.54016 -10.23851 -9.96129 -9.87190 -9.68363 -9.30902 -8.48378 -7.52288 -6.98706 -6.95698 -4.58495 1.61258 1.96145 2.38596 2.81237 2.82716 2.96677 2.98579 3.16524 3.33261 3.76624 3.90283 4.39453 4.74813 5.24219 5.37785 5.63213 5.73214 5.97824 6.05677 6.17188 6.33155 6.35516 6.47887 6.58622 6.68594 6.78226 6.86729 6.95014 7.11389 7.16874 7.39907 7.63675 7.77688 8.16058 8.24759 8.53323 8.58239 9.95294 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.019941 B = 0.008492 C = 0.006172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.827109 B = 3296.375956 C = 4535.555267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.074 4.074 3 C -0.086 4.086 4 C 0.104 3.896 5 C -0.447 4.447 6 H 0.088 0.912 7 C 0.074 3.926 8 N -0.788 5.788 9 Si 0.911 3.089 10 H -0.262 1.262 11 H -0.277 1.277 12 H -0.264 1.264 13 C -0.107 4.107 14 C -0.060 4.060 15 C -0.103 4.103 16 C -0.205 4.205 17 S 0.007 5.993 18 C -0.184 4.184 19 C 0.006 3.994 20 C 0.276 3.724 21 N -0.460 5.460 22 H 0.047 0.953 23 H 0.044 0.956 24 H 0.063 0.937 25 H 0.084 0.916 26 H 0.050 0.950 27 H 0.285 0.715 28 H 0.133 0.867 29 H 0.134 0.866 30 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.293 2.505 -0.360 2.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.111 4.111 3 C -0.092 4.092 4 C 0.100 3.900 5 C -0.477 4.477 6 H 0.106 0.894 7 C -0.145 4.145 8 N -0.412 5.412 9 Si 0.735 3.265 10 H -0.186 1.186 11 H -0.202 1.202 12 H -0.188 1.188 13 C -0.130 4.130 14 C -0.066 4.066 15 C -0.134 4.134 16 C -0.338 4.338 17 S 0.266 5.734 18 C -0.301 4.301 19 C -0.002 4.002 20 C -0.037 4.037 21 N -0.136 5.136 22 H 0.066 0.934 23 H 0.064 0.936 24 H 0.082 0.918 25 H 0.102 0.898 26 H 0.069 0.931 27 H 0.097 0.903 28 H 0.151 0.849 29 H 0.152 0.848 30 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -1.411 1.706 2.581 3.401 hybrid contribution 0.132 0.324 -2.622 2.645 sum -1.279 2.030 -0.041 2.400 Atomic orbital electron populations 1.21706 0.95712 1.00555 1.01963 1.20360 0.95378 0.93384 1.02026 1.19869 1.03278 0.95037 0.91006 1.17103 0.90735 0.90908 0.91244 1.19534 1.20140 1.16134 0.91851 0.89391 1.25923 0.93306 0.93603 1.01637 1.69787 1.11836 1.27367 1.32234 0.86299 0.79896 0.80088 0.80227 1.18629 1.20222 1.18814 1.21397 1.02763 0.93837 0.94983 1.19054 1.01928 0.92468 0.93169 1.21005 1.00666 0.95457 0.96288 1.24637 1.10039 1.02448 0.96705 1.83662 1.73374 1.06315 1.10013 1.21766 1.15992 0.97109 0.95268 1.14906 1.08150 0.91049 0.86110 1.26079 0.92410 0.92475 0.92765 1.81077 1.11156 1.09975 1.11437 0.93413 0.93649 0.91828 0.89773 0.93145 0.90343 0.84948 0.84813 0.82971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.38 9.86 37.16 0.37 -2.01 16 2 C -0.07 -1.39 5.02 -27.88 -0.14 -1.53 16 3 C -0.09 -1.85 5.21 -103.64 -0.54 -2.39 16 4 C 0.10 2.38 5.55 -107.09 -0.59 1.78 16 5 C -0.45 -10.03 8.10 -37.80 -0.31 -10.33 16 6 H 0.09 1.86 6.53 -52.49 -0.34 1.52 16 7 C 0.07 1.62 5.16 -17.35 -0.09 1.53 16 8 N -0.79 -17.86 10.91 55.54 0.61 -17.26 16 9 Si 0.91 16.53 29.59 -169.99 -5.03 11.50 16 10 H -0.26 -4.75 7.11 56.52 0.40 -4.34 16 11 H -0.28 -4.99 7.11 56.52 0.40 -4.59 16 12 H -0.26 -4.77 7.11 56.52 0.40 -4.37 16 13 C -0.11 -2.44 8.72 -38.08 -0.33 -2.77 16 14 C -0.06 -1.29 6.02 -105.42 -0.63 -1.92 16 15 C -0.10 -1.87 10.38 -38.49 -0.40 -2.27 16 16 C -0.21 -3.43 11.00 28.86 0.32 -3.11 16 17 S 0.01 0.14 22.92 -107.50 -2.46 -2.33 16 18 C -0.18 -3.96 6.37 -37.57 -0.24 -4.20 16 19 C 0.01 0.13 5.75 -106.61 -0.61 -0.48 16 20 C 0.28 5.82 13.45 -22.47 -0.30 5.52 16 21 N -0.46 -9.80 18.54 41.84 0.78 -9.03 16 22 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 23 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.06 1.07 7.85 -51.93 -0.41 0.66 16 25 H 0.08 1.56 6.76 -51.93 -0.35 1.21 16 26 H 0.05 0.93 7.05 -51.92 -0.37 0.57 16 27 H 0.29 5.94 8.30 -40.82 -0.34 5.60 16 28 H 0.13 3.08 6.12 -52.49 -0.32 2.75 16 29 H 0.13 2.11 8.06 -52.49 -0.42 1.69 16 30 H 0.15 2.01 8.06 -52.49 -0.42 1.59 16 LS Contribution 278.86 15.07 4.20 4.20 Total: -1.00 -24.15 278.86 -8.03 -32.18 By element: Atomic # 1 Polarization: 5.52 SS G_CDS: -2.61 Total: 2.91 kcal Atomic # 6 Polarization: -18.68 SS G_CDS: -3.51 Total: -22.19 kcal Atomic # 7 Polarization: -27.66 SS G_CDS: 1.38 Total: -26.28 kcal Atomic # 14 Polarization: 16.53 SS G_CDS: -5.03 Total: 11.50 kcal Atomic # 16 Polarization: 0.14 SS G_CDS: -2.46 Total: -2.33 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -24.15 -8.03 -32.18 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396222350.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.870 kcal (2) G-P(sol) polarization free energy of solvation -24.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.184 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds